These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5050#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 857 fasta sequence [AAATCAGTTTGTTAAGGGCACGGCGCTATGTTTAAGGTCCCGTTCATAATCTAAATGAAATGTTTCGCAAAAGCCTTCTTGCTTGGCATTTTAGTTTAATTCTGTTAATTGATAATTCAAATGGTTCAGATGTTGATTTCGAATTCCCTCCCAGTCCTTATTCATCAGACTTCAAGAAGTGTGGACTCGACAAAAAGGGATACGTGTGTGATCCCGACAAAATTCTCGACTATTCTTCTAGACAATCAATAAATGAATTGTTATTACATTATCCTCGAGAAACACCATGTTTATGTCGTCATCCGTGTTTTAGAAATGAAGTTAGTCAAAATGCTAGACTTGTTGTAACAGCGCTAGTTTCGAAACCATTTTCAAATAAAAATGCTTCAATCGTACAATATGCAAATAATATTCGAAATAAATGGAAAATTGGAGCATGTAATGGCAATGATGTTTTAATTTTAATCACAGAAAAAGCTCTTCATATTTCATATGGATCGTTAGTATCACGAGCTNTAAATGCGGAATGTACACGTCGTTTAATTGGTCGTTTCGATGCTAATAAAGAAATCACTANCAATATTCGTCAAACAGCTTTTATTCTACGTGAATATTNTCTTGATCCCATG-TTATGTCGACCATGTAAAACTGCTTATTCATGGTTTAAAATGCCAGCTATGCTNNTAGCATNGTNNTTGNTTATTAACATGGNNTAAGTTNAGNTNGGNTCGTANNAGCATATTTTACCGTCGTNATAANNTTTGAATACACGNTCCCATATGNTNCATTTATCTGATCTTACTTATCCANCANNCAATAGACAGCATTATCATCATACCCGTTCATCACGTACTGGA] [+] EMBL CD124225 [AAATCAGTTTGTTAAGGGCACGGCGCTATGTTTAAGGTCCCGTTCATAATCTAAATGAAATGTTTCGCAAAAGCCTTCTTGCTTGGCATTTTAGTTTAATTCTGTTAATTGATAATTCAAATGGTTCAGATGTTGATTTCGAATTCCCTCCCAGTCCTTATTCATCAGACTTCAAGAAGTGTGGACTCGACAAAAAGGGATACGTGTGTGATCCCGACAAAATTCTCGACTATTCTTCTAGACAATCAATAAATGAATTGTTATTACATTATCCTCGAGAAACACCATGTTTATGTCGTCATCCGTGTTTTAGAAATGAAGTTAGTCAAAATGCTAGACTTGTTGTAACAGCGCTAGTTTCGAAACCATTTTCAAATAAAAATGCTTCAATCGTACAATATGCAAATAATATTCGAAATAAATGGAAAATTGGAGCATGTAATGGCAATGATGTTTTAATTTTAATCACAGAAAAAGCTCTTCATATTTCATATGGATCGTTAGTATCACGAGCTNTAAATGCGGAATGTACACGTCGTTTAATTGGTCGTTTCGATGCTAATAAAGAAATCACTANCAATATTCGTCAAACAGCTTTTATTCTACGTGAATATTNTCTTGATCCCATG TTATGTCGACCATGTAAAACTGCTTATTCATGGTTTAAAATGCCAGCTATGCTNNTAGCATNGTNNTTGNTTATTAACATGGNNTAAGTTNAGNTNGGNTCGTANNAGCATATTTTACCGTCGTNATAANNTTTGAATACACGNTCCCATATGNTNCATTTATCTGATCTTACTTATCCANCANNCAATAGACAGCATTATCATCATACCCGTTCATCACGTACTGGA] [+] EMBL CD145185 [ GGATACGTGTGTGATCCCGACAAAATTCTCGACTATTCTTCTAGACAATCAATAAATGAATTGTTATTACATTATCCTCGAGAAACACCATGTTTATGTCGTCATCCGTGTTTTAGAAATGAAGTTAGTCAAAATGCTAGACTTGTTGTAACGGCGCTAGTTTCGAAACCATTTTCAAATAAAAATGCTTCAATCGTACAATATGCAAATAATATTCGAAATAAATGGAAAATTGGAGCATGTAATGGCAATGATGTTTTGATTTTAATCACAGAAAAAGCTCTTCATATTTCATATGGATCGTTAGTATCACGAGCTTTAAATGCGGAATGTACACGTCGTTTAATTGGTCGTTTCGATGCTAATAAAGAAATCACTACAAATATTCGTCAAACAGCTTTTATTCTACGTGAATATTTTCTTGAT CCATGTTTATGTCGACCATGTAAAACTGCTTATTCATGGTTTAAAATACCAGCTATGCTTTTAGCAT GTTTTTGTTTATTAACATGGTTAAAGTTag ] consensusID : consensus_5050#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 820 fasta sequence [AGGAAACGTGGGTGATCCGACAAAATTCTCGCTATTCTTNTAGCCATCCATAAATGGATTGTATTCACATATCCTCGAGAACCACCATGTTTATGTCGTCATCGTGGTTTAGAAATGGAGTTAGTCAAAATGCTAGACTTGTTGTACAGCGNCTAGTTCGGAACCCATTTTCAAATAAAATGCTTCAATCGTACAATATGCAATAAATATTCGAAATAAAGGNAAATTGANGCATGTAATGGCAATGATGTTTAAATTTAATCACAGAAAAAGCTCTTCATATTTCATATGGATCGTTAGTATCACGAGCTNTAAATGCGGAATGTACACGTCGTTTAATTGGTCGTTTCGATGCTAATAAAGAAATCACTACAAATATTCGTCAAACAGCTTTTATTCTACGTGAATATTTTCTTGATCCATGTTTATGTCGACCATGTAAAACTGCTTATTCATGGTTTAAAATACCAGCTATGCTTTTAGCATGTTTTTGTTTATTAACATGGTTAAGTTTAGTTGGTCGTAGAGCATATTTACGTCGTAATAATTTGAATACACGTCCATATTGTTCATTATCTGATCTTACTTATACAACAACAAATAGACAGCATTATCATCATACACGTTCATCACGTACTGGACGTATTCGAACTGGTGGATTATCTTCACCATTTAATTTATGGGAAACAAGATCATATCGTTCAAATAGTATACATGGTATAGAAAGTACAAATAATATGTCCAATTCAAATTGGTGTAATCTTTCTTCATATTTTGGACGACCTAATGGTCTCTATTCTGATGGATTTCGTACTACACC] [-] EMBL CD145272 [AGGAAACGTGGGTGATCCGACAAAATTCTCGCTATTCTTNTAGCCATCCATAAATGGATTGTATTCACATATCCTCGAGAACCACCATGTTTATGTCGTCATCGTGGTTTAGAAATGGAGTTAGTCAAAATGCTAGACTTGTTGTACAGCGNCTAGTTCGGAACCCATTTTCAAATAAAATGCTTCAATCGTACAATATGCAATAAATATTCGAAATAAAGGNAAATTGANGCATGTAATGGCAATGATGTTTAAATTTAATCACAGAAAAAGCTCTTCATATTTCATATGGATCGTTAGTATCACGAGCTNTAAATGCGGAATGTACACGTCGTTTAATTGGTCGTTTCGATGCTAATAAAGAAATCACTACAAATATTCGTCAAACAGCTTTTATTCTACGTGAATATTTTCTTGATCCATGTTTATGTCGACCATGTAAAACTGCTTATTCATGGTTTAAAATACCAGCTATGCTTTTAGCATGTTTTTGTTTATTAACATGGTTAAGTTTAGTTGGTCGTAGAGCATATTTACGTCGTAATAATTTGAATACACGTCCATATTGTTCATTATCTGATCTTACTTATACAACAACAAATAGACAGCATTATCATCATACACGTTCATCACGTACTGGACGTATTCGAACTGGTGGATTATCTTCACCATTTAATTTATGGGAAACAAGATCATATCGTTCAAATAGTATACATGGTATAGAAAGTACAAATAATATGTCCAATTCAAATTGGTGTAATCTTTCTTCATATTTTGGACGACCTAATGGTCTCTATTCTGATGGATTTCGTACTACACC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5050#0 AAATCAGTTTGTTAAGGGCACGGCGCTATGTTTAAGGTCCCGTTCATAATCTAAATGAAA 60 consensus_5050#1 ------------------------------------------------------------ consensus_5050#0 TGTTTCGCAAAAGCCTTCTTGCTTGGCATTTTAGTTTAATTCTGTTAATTGATAATTCAA 120 consensus_5050#1 ------------------------------------------------------------ consensus_5050#0 ATGGTTCAGATGTTGATTTCGAATTCCCTCCCAGTCCTTATTCATCAGACTTCAAGAAGT 180 consensus_5050#1 ------------------------------------------------------------ consensus_5050#0 GTGGACTCGACAAAAAGGGATACGTGTGTGATCCCGACAAAATTCTCGACTATTCTTCTA 240 consensus_5050#1 ----------------AGGAAACGTGGGTGATCC-GACAAAATTCTCG-CTATTCTTNTA 42 *** ***** ******* ************* ******** ** consensus_5050#0 GACAATCAATAAATGAATTGTTATTACATTATCCTCGAGAAACACCATGTTTATGTCGTC 300 consensus_5050#1 GCCA-TCCATAAATGGATTGTATTCACAT-ATCCTCGAGAACCACCATGTTTATGTCGTC 100 * ** ** ******* ***** * **** *********** ****************** consensus_5050#0 ATCCGTGTTTTAGAAATGAAGTTAGTCAAAATGCTAGACTTGTTGTAACAGCGCTAGTTT 360 consensus_5050#1 ATC-GTGGTTTAGAAATGGAGTTAGTCAAAATGCTAGACTTGTTGTACAGCGNCTAGTTC 159 *** *** ********** **************************** ****** consensus_5050#0 CGAAACCATTTTCAAATAAAAATGCTTCAATCGTACAATATGCAAATAATATTCGAAATA 420 consensus_5050#1 GGAACCCATTTTCAAATAAAA-TGCTTCAATCGTACAATATGCAATAAATATTCGAAATA 218 *** **************** *********************** ************* consensus_5050#0 AATGGAAAATTGGAGCATGTAATGGCAATGATGTTTTAATTTTAATCACAGAAAAAGCTC 480 consensus_5050#1 AA-GGNAAATTGANGCATGTAATGGCAATGATGTTTAAATTT-AATCACAGAAAAAGCTC 276 ** ** ****** ********************** ***** ***************** consensus_5050#0 TTCATATTTCATATGGATCGTTAGTATCACGAGCTNTAAATGCGGAATGTACACGTCGTT 540 consensus_5050#1 TTCATATTTCATATGGATCGTTAGTATCACGAGCTNTAAATGCGGAATGTACACGTCGTT 336 ************************************************************ consensus_5050#0 TAATTGGTCGTTTCGATGCTAATAAAGAAATCACTANCAATATTCGTCAAACAGCTTTTA 600 consensus_5050#1 TAATTGGTCGTTTCGATGCTAATAAAGAAATCACTACAAATATTCGTCAAACAGCTTTTA 396 ************************************ ********************** consensus_5050#0 TTCTACGTGAATATTNTCTTGATCCCATGTTATGTCGACCATGTAAAACTGCTTATTCAT 660 consensus_5050#1 TTCTACGTGAATATTTTCTTGATCCATGTTTATGTCGACCATGTAAAACTGCTTATTCAT 456 *************** ********* ******************************* consensus_5050#0 GGTTTAAAATGCCAGCTATGCTNNTAGCATNGTNNTTGNTTATTAACATGGNNTAAGTTN 720 consensus_5050#1 GGTTTAAAATACCAGCTATGCTTTTAGCATG-TTTTTGTTTATTAACATGGTT-AAGTTT 514 ********** *********** ****** * *** ************ ***** consensus_5050#0 AGNTNGGNTCGTANNAGCATATTTTACCGTCGTNATAANNTTTGAATACACGNTCCCATA 780 consensus_5050#1 AGTTGG--TCGTAGA-GCATATTTA--CGTCGTAATAATT--TGAATACACGT--CCATA 565 ** * * ***** ******** ****** **** ********** ***** consensus_5050#0 TGNTNCATTTATCTGATCTTACTTATCCANCANNCAATAGACAGCATTATCATCATACCC 840 consensus_5050#1 TTGTTCATT-ATCTGATCTTACTTATACAACAACAAATAGACAGCATTATCATCATACAC 624 * * **** **************** ** ** *********************** * consensus_5050#0 GTTCATCACGTACTGGA------------------------------------------- 857 consensus_5050#1 GTTCATCACGTACTGGACGTATTCGAACTGGTGGATTATCTTCACCATTTAATTTATGGG 684 ***************** consensus_5050#0 ------------------------------------------------------------ consensus_5050#1 AAACAAGATCATATCGTTCAAATAGTATACATGGTATAGAAAGTACAAATAATATGTCCA 744 consensus_5050#0 ------------------------------------------------------------ consensus_5050#1 ATTCAAATTGGTGTAATCTTTCTTCATATTTTGGACGACCTAATGGTCTCTATTCTGATG 804 consensus_5050#0 ---------------- consensus_5050#1 GATTTCGTACTACACC 820 |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||