cluster # 5057

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Schistosoma mansoni
cluster # 5057 cluster # 5057 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5057#0 length = 400 sequences # 2

consensus_5057#1 length = 304 sequences # 1

consensusID : consensus_5057#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 400
fasta sequence

                              [GTTATTTAGACTAGCGCTCGTAACATTAGCAACACGATTTAGTTCCTTAGACTGGTGCTGTGAAAATTTATTTGGATCAATTTCGAGCGTCCACGTATGCGATTACTTTGATTTACGATCGGATTACTGGGAAACGGCATTTTTACTAGTCATCAAGTCCTTTTTTAATGCCCAGAATATGCACACTAAACTATTTCATTCTCTGCTCAGGAGTTGTCATAACTATTGCGCTGATATTCCTTGTTAGGTCGAACCAGTTGGATGAGAAACTTTTTCCTTACTCAAAGAGGTTTAATGGTTCAGCTTGCGTAACGAAGGATGGGAAAGTAACATGTACAGAAAGTACACATCAAAGTTTGTCAGATTCATTTCGTCGCTTTATGATTTTTAAATGTTCACT]

[+] EMBL CD116328             [GTTATTTAGACTAGCGCTCGTAACATTAGCAACACGATTTAGTTCCTTAGACTGGTGCTGTGAAAATTTATTTGGATCAATTTCGAGCGTCCACGTATGCGATTACTTTGATTTACGATCGGATTACTGGGAAACGGCATTTTTACTAGTCATCAAGTCCTTTTTTAATGCCCAGAATATGCACACTAAACTATTTCATTCTCTGCTCAGGAGTTGTCATAACTATTGCGCTGATATTCCTTGTTAGGTCGAACCAGTTGGATGAGAAACTTTTTCCTTACTCAAAGAGGTTTAATGGTTCAGCTTGCGTAACGAAGGATGGGAAAGTAACATGTACAGAAAGTACACATCAAAGTTTGTCAGATTCATTTCGTCGCTTTATGATTTTTAAATGTTCACT]
[+] EMBL SMAA25633            [                          TAGCAACACGATTTAGTTCCTTAAACTGGTGCTGTGAAAATTTA TTGGATCAATTTCGAGCGTCCACGTATGCGATTACTTTGATTTACGATCGGATTACTGGG AACGGCA TTTTACTAGTCATCAAGTCC TTTTTAATG CCAGAATATGCACACTAAACTATTTCA TCTCTGCTCAGGAG                                                                                                                                                                                           ]




>consensus_5057#0
GTTATTTAGACTAGCGCTCGTAACATTAGCAACACGATTTAGTTCCTTAGACTGGTGCTG
TGAAAATTTATTTGGATCAATTTCGAGCGTCCACGTATGCGATTACTTTGATTTACGATC
GGATTACTGGGAAACGGCATTTTTACTAGTCATCAAGTCCTTTTTTAATGCCCAGAATAT
GCACACTAAACTATTTCATTCTCTGCTCAGGAGTTGTCATAACTATTGCGCTGATATTCC
TTGTTAGGTCGAACCAGTTGGATGAGAAACTTTTTCCTTACTCAAAGAGGTTTAATGGTT
CAGCTTGCGTAACGAAGGATGGGAAAGTAACATGTACAGAAAGTACACATCAAAGTTTGT
CAGATTCATTTCGTCGCTTTATGATTTTTAAATGTTCACT

consensusID : consensus_5057#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 304
fasta sequence

                              [TAGCAACACGATTTAGTTCCTTAAACTGGTGCTGTGAAAATTTATTTGGACTCAATTTCGAGCGTCCACGTATGCGATTACTTTGATTTACGATCGGATTACTGGGAAACGGCATTTTTACTAGTCATCAAGTCCTTTTTTCATGCCCAGAATATGCACACTAAACTATTTCATTCTCTGCTCAGGAGTTGTCATAACGTGAGAATCATCTTTTGATATAAAAAGCAGTATTGCGCTGATATTCCTTGTTAGGTCGAAACAGTTGGATGAGAAACTTTTTCCTTACTCAAAGAGGTTTAATGGT]

[+] EMBL AA958288             [TAGCAACACGATTTAGTTCCTTAAACTGGTGCTGTGAAAATTTATTTGGACTCAATTTCGAGCGTCCACGTATGCGATTACTTTGATTTACGATCGGATTACTGGGAAACGGCATTTTTACTAGTCATCAAGTCCTTTTTTCATGCCCAGAATATGCACACTAAACTATTTCATTCTCTGCTCAGGAGTTGTCATAACGTGAGAATCATCTTTTGATATAAAAAGCAGTATTGCGCTGATATTCCTTGTTAGGTCGAAACAGTTGGATGAGAAACTTTTTCCTTACTCAAAGAGGTTTAATGGT]




>consensus_5057#1
TAGCAACACGATTTAGTTCCTTAAACTGGTGCTGTGAAAATTTATTTGGACTCAATTTCG
AGCGTCCACGTATGCGATTACTTTGATTTACGATCGGATTACTGGGAAACGGCATTTTTA
CTAGTCATCAAGTCCTTTTTTCATGCCCAGAATATGCACACTAAACTATTTCATTCTCTG
CTCAGGAGTTGTCATAACGTGAGAATCATCTTTTGATATAAAAAGCAGTATTGCGCTGAT
ATTCCTTGTTAGGTCGAAACAGTTGGATGAGAAACTTTTTCCTTACTCAAAGAGGTTTAA
TGGT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5057#0      GTTATTTAGACTAGCGCTCGTAACATTAGCAACACGATTTAGTTCCTTAGACTGGTGCTG 60
consensus_5057#1      --------------------------TAGCAACACGATTTAGTTCCTTAAACTGGTGCTG 34
                                                *********************** **********

consensus_5057#0      TGAAAATTTATTTGGA-TCAATTTCGAGCGTCCACGTATGCGATTACTTTGATTTACGAT 119
consensus_5057#1      TGAAAATTTATTTGGACTCAATTTCGAGCGTCCACGTATGCGATTACTTTGATTTACGAT 94
                      **************** *******************************************

consensus_5057#0      CGGATTACTGGGAAACGGCATTTTTACTAGTCATCAAGTCCTTTTTTAATGCCCAGAATA 179
consensus_5057#1      CGGATTACTGGGAAACGGCATTTTTACTAGTCATCAAGTCCTTTTTTCATGCCCAGAATA 154
                      *********************************************** ************

consensus_5057#0      TGCACACTAAACTATTTCATTCTCTGCTCAGGAGTTGTCATAAC---------------- 223
consensus_5057#1      TGCACACTAAACTATTTCATTCTCTGCTCAGGAGTTGTCATAACGTGAGAATCATCTTTT 214
                      ********************************************                

consensus_5057#0      --------------TATTGCGCTGATATTCCTTGTTAGGTCGAACCAGTTGGATGAGAAA 269
consensus_5057#1      GATATAAAAAGCAGTATTGCGCTGATATTCCTTGTTAGGTCGAAACAGTTGGATGAGAAA 274
                                    ****************************** ***************

consensus_5057#0      CTTTTTCCTTACTCAAAGAGGTTTAATGGTTCAGCTTGCGTAACGAAGGATGGGAAAGTA 329
consensus_5057#1      CTTTTTCCTTACTCAAAGAGGTTTAATGGT------------------------------ 304
                      ******************************                              

consensus_5057#0      ACATGTACAGAAAGTACACATCAAAGTTTGTCAGATTCATTTCGTCGCTTTATGATTTTT 389
consensus_5057#1      ------------------------------------------------------------
                                                                                  

consensus_5057#0      AAATGTTCACT 400
consensus_5057#1      -----------