These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5067#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 580 fasta sequence [TGACGTATAGCTGGCGGATTGAACAAAATATTGGAAATAGAGATGAAAGAAAGAAAAAATCAATGCCGAGGACTGAAGTCTAATCAAAACCTATGCTTAACACAAGGGTGGATGTATCGAGAGGATCGGTGAAAGTGTAGAAAAACAATGGATAAGAATAGCAGGAAGGTATTAGTGGTGACAAAATATACTGTCATAAAAAATAAATAAATAAACCTATGACAGACTCACCGAATTGGACAGGTGATTCCAGAAATTAAGTGAGTTATATTATCCAAATACGATTTTAATGAAAGTATATGGAATAATGAGTACAGTGCTTTGTCATACACGATTATATATACTTCTAGATATTAGGTAGAGATCCGAATAGATCCTGTAAATACATAAAGTACGTGTGTTGTAGCATACAAACACGATATAATGAATAGAATACAAATATGAAATTATATTCCTCGCCGAATATGATTATATACGGTTTTTGGAATGACAGAGGAAGGTTATATCGTATAGCCAAAATGAATATACCATTATTTGATTATGAGTTATTGTATGAATATGATCATATATACCATNCATA] [+] EMBL CD159364 [TGACGTATAGCTGGCGGATTGAACAAAATATTGGAAATAGAGATGAAAGAAAGAAAAAATCAATGCCGAGGACTGAAGTCTAATCAAAACCTATGCTTAACACAAGGGTGGATGTATCGAGAGGATCGGTGAAAGTGTAGAAAAACAATGGATAAGAATAGCAGGAAGGTATTAGTGGTGACAAAATATACTGTCATAAAAAATAAATAAATAAACCTATGACAGACTCACCGAATTGGACAGGTGATTCCAGAAATTAAGTGAGTTATATTATCCAAATACGATTTTAATGAAAGTATATGGAATAATGAGTACAGTGCTTTGTCATACACGATTATATATACTTCTAGATATTAGGTAGAGATCCGAATAGATCCTGTAAATACATAAAGTACGTGTGTTGTAGCATACAAACACGATATAATGAATAGAATACAAATATGAAATTATATTCCTCGCCGAATATGATTATATACGGTTTTTGGAATGACAGAGGAAGGTTATATCGTATAGCCAAAATGAATATACCATTATTTGATTATGAGTTATTGTATGAATATGATCATATATACCATNCATA] consensusID : consensus_5067#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 530 fasta sequence [AGACTGTGCTTTTTTCGTAAACGAATTGGACAGGTGATTCCAGAAATTAAGTGAGTTATATTATCCAAATACGATTTTAATGGAAGCATATGGAATAGTGAGTACAGTGCTTTGTCATACACGATTATATATATTTCTAGATATTAGGTAGAGATCCGAATAGATCCTGTAAATACATAAAGTACGTGTGTTGTAGCATACAAACACGATATAATGAACAGAATAAAAATATGAAGTTATATTCCTCGCCGAATAAGATTATATACGGTTTTTGGAATGACAGATGGTTATATCGTATAGCCAAAATGAATATACAGTTATTTGATTACGAGTTATTGTATGAATATGATCATGTATACCATCAATAAGTTAAAATTAAGATCTTATCGTATAGCATAAAATTTGCAGCTTAAACGTGAACAGATCAGAATTGAGTTGTCTTCCGTAATTCCAAGGAAAGATAATCCATCCAGCTCAGTGAGAATCCTAGAAAAAAGACAAAATGAAGACCACGGCCAAAAAGTAACGAC] [-] EMBL CD198072 [AGACTGTGCTTTTTTCGTAAACGAATTGGACAGGTGATTCCAGAAATTAAGTGAGTTATATTATCCAAATACGATTTTAATGGAAGCATATGGAATAGTGAGTACAGTGCTTTGTCATACACGATTATATATATTTCTAGATATTAGGTAGAGATCCGAATAGATCCTGTAAATACATAAAGTACGTGTGTTGTAGCATACAAACACGATATAATGAACAGAATAAAAATATGAAGTTATATTCCTCGCCGAATAAGATTATATACGGTTTTTGGAATGACAGATGGTTATATCGTATAGCCAAAATGAATATACAGTTATTTGATTACGAGTTATTGTATGAATATGATCATGTATACCATCAATAAGTTAAAATTAAGATCTTATCGTATAGCATAAAATTTGCAGCTTAAACGTGAACAGATCAGAATTGAGTTGTCTTCCGTAATTCCAAGGAAAGATAATCCATCCAGCTCAGTGAGAATCCTAGAAAAAAGACAAAATGAAGACCACGGCCAAAAAGTAACGAC] [-] EMBL CD198105 [ tCGTAATTCCAAGGAAAGATAATCCATCCAGCTCAGTGAGAATCCTAGAAAAAAGACAAAATGAAGACCACGGCCAAAAAGTAACGAC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5067#0 TGACGTATAGCTGGCGGATTGAACAAAATATTGGAAATAGAGATGAAAGAAAGAAAAAAT 60 consensus_5067#1 ------------------------------------------------------------ consensus_5067#0 CAATGCCGAGGACTGAAGTCTAATCAAAACCTATGCTTAACACAAGGGTGGATGTATCGA 120 consensus_5067#1 ------------------------------------------------------------ consensus_5067#0 GAGGATCGGTGAAAGTGTAGAAAAACAATGGATAAGAATAGCAGGAAGGTATTAGTGGTG 180 consensus_5067#1 ------------------------------------------------------------ consensus_5067#0 ACAAAATATACTGTCATAAAAAATAAATAAATAAACCTATGACAGACTCACCGAATTGGA 240 consensus_5067#1 ---------------------------AGACTGTGCTTTTTTCGTA---AACGAATTGGA 30 * * * * * * * * ********* consensus_5067#0 CAGGTGATTCCAGAAATTAAGTGAGTTATATTATCCAAATACGATTTTAATGAAAGTATA 300 consensus_5067#1 CAGGTGATTCCAGAAATTAAGTGAGTTATATTATCCAAATACGATTTTAATGGAAGCATA 90 **************************************************** *** *** consensus_5067#0 TGGAATAATGAGTACAGTGCTTTGTCATACACGATTATATATACTTCTAGATATTAGGTA 360 consensus_5067#1 TGGAATAGTGAGTACAGTGCTTTGTCATACACGATTATATATATTTCTAGATATTAGGTA 150 ******* *********************************** **************** consensus_5067#0 GAGATCCGAATAGATCCTGTAAATACATAAAGTACGTGTGTTGTAGCATACAAACACGAT 420 consensus_5067#1 GAGATCCGAATAGATCCTGTAAATACATAAAGTACGTGTGTTGTAGCATACAAACACGAT 210 ************************************************************ consensus_5067#0 ATAATGAATAGAATACAAATATGAAATTATATTCCTCGCCGAATATGATTATATACGGTT 480 consensus_5067#1 ATAATGAACAGAATAAAAATATGAAGTTATATTCCTCGCCGAATAAGATTATATACGGTT 270 ******** ****** ********* ******************* ************** consensus_5067#0 TTTGGAATGACAGAGGAAGGTTATATCGTATAGCCAAAATGAATATACCATTATTTGATT 540 consensus_5067#1 TTTGGAATGACAGAT---GGTTATATCGTATAGCCAAAATGAATATACAGTTATTTGATT 327 ************** ****************************** ********** consensus_5067#0 ATGAGTTATTGTATGAATATGATCATATATACCATNCATA-------------------- 580 consensus_5067#1 ACGAGTTATTGTATGAATATGATCATGTATACCATCAATAAGTTAAAATTAAGATCTTAT 387 * ************************ ******** *** consensus_5067#0 ------------------------------------------------------------ consensus_5067#1 CGTATAGCATAAAATTTGCAGCTTAAACGTGAACAGATCAGAATTGAGTTGTCTTCCGTA 447 consensus_5067#0 ------------------------------------------------------------ consensus_5067#1 ATTCCAAGGAAAGATAATCCATCCAGCTCAGTGAGAATCCTAGAAAAAAGACAAAATGAA 507 consensus_5067#0 ----------------------- consensus_5067#1 GACCACGGCCAAAAAGTAACGAC 530 |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||