cluster # 5067

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Schistosoma mansoni
cluster # 5067 cluster # 5067 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5067#0 length = 580 sequences # 1

consensus_5067#1 length = 530 sequences # 2

consensusID : consensus_5067#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 580
fasta sequence

                              [TGACGTATAGCTGGCGGATTGAACAAAATATTGGAAATAGAGATGAAAGAAAGAAAAAATCAATGCCGAGGACTGAAGTCTAATCAAAACCTATGCTTAACACAAGGGTGGATGTATCGAGAGGATCGGTGAAAGTGTAGAAAAACAATGGATAAGAATAGCAGGAAGGTATTAGTGGTGACAAAATATACTGTCATAAAAAATAAATAAATAAACCTATGACAGACTCACCGAATTGGACAGGTGATTCCAGAAATTAAGTGAGTTATATTATCCAAATACGATTTTAATGAAAGTATATGGAATAATGAGTACAGTGCTTTGTCATACACGATTATATATACTTCTAGATATTAGGTAGAGATCCGAATAGATCCTGTAAATACATAAAGTACGTGTGTTGTAGCATACAAACACGATATAATGAATAGAATACAAATATGAAATTATATTCCTCGCCGAATATGATTATATACGGTTTTTGGAATGACAGAGGAAGGTTATATCGTATAGCCAAAATGAATATACCATTATTTGATTATGAGTTATTGTATGAATATGATCATATATACCATNCATA]

[+] EMBL CD159364             [TGACGTATAGCTGGCGGATTGAACAAAATATTGGAAATAGAGATGAAAGAAAGAAAAAATCAATGCCGAGGACTGAAGTCTAATCAAAACCTATGCTTAACACAAGGGTGGATGTATCGAGAGGATCGGTGAAAGTGTAGAAAAACAATGGATAAGAATAGCAGGAAGGTATTAGTGGTGACAAAATATACTGTCATAAAAAATAAATAAATAAACCTATGACAGACTCACCGAATTGGACAGGTGATTCCAGAAATTAAGTGAGTTATATTATCCAAATACGATTTTAATGAAAGTATATGGAATAATGAGTACAGTGCTTTGTCATACACGATTATATATACTTCTAGATATTAGGTAGAGATCCGAATAGATCCTGTAAATACATAAAGTACGTGTGTTGTAGCATACAAACACGATATAATGAATAGAATACAAATATGAAATTATATTCCTCGCCGAATATGATTATATACGGTTTTTGGAATGACAGAGGAAGGTTATATCGTATAGCCAAAATGAATATACCATTATTTGATTATGAGTTATTGTATGAATATGATCATATATACCATNCATA]




>consensus_5067#0
TGACGTATAGCTGGCGGATTGAACAAAATATTGGAAATAGAGATGAAAGAAAGAAAAAAT
CAATGCCGAGGACTGAAGTCTAATCAAAACCTATGCTTAACACAAGGGTGGATGTATCGA
GAGGATCGGTGAAAGTGTAGAAAAACAATGGATAAGAATAGCAGGAAGGTATTAGTGGTG
ACAAAATATACTGTCATAAAAAATAAATAAATAAACCTATGACAGACTCACCGAATTGGA
CAGGTGATTCCAGAAATTAAGTGAGTTATATTATCCAAATACGATTTTAATGAAAGTATA
TGGAATAATGAGTACAGTGCTTTGTCATACACGATTATATATACTTCTAGATATTAGGTA
GAGATCCGAATAGATCCTGTAAATACATAAAGTACGTGTGTTGTAGCATACAAACACGAT
ATAATGAATAGAATACAAATATGAAATTATATTCCTCGCCGAATATGATTATATACGGTT
TTTGGAATGACAGAGGAAGGTTATATCGTATAGCCAAAATGAATATACCATTATTTGATT
ATGAGTTATTGTATGAATATGATCATATATACCATNCATA

consensusID : consensus_5067#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 530
fasta sequence

                              [AGACTGTGCTTTTTTCGTAAACGAATTGGACAGGTGATTCCAGAAATTAAGTGAGTTATATTATCCAAATACGATTTTAATGGAAGCATATGGAATAGTGAGTACAGTGCTTTGTCATACACGATTATATATATTTCTAGATATTAGGTAGAGATCCGAATAGATCCTGTAAATACATAAAGTACGTGTGTTGTAGCATACAAACACGATATAATGAACAGAATAAAAATATGAAGTTATATTCCTCGCCGAATAAGATTATATACGGTTTTTGGAATGACAGATGGTTATATCGTATAGCCAAAATGAATATACAGTTATTTGATTACGAGTTATTGTATGAATATGATCATGTATACCATCAATAAGTTAAAATTAAGATCTTATCGTATAGCATAAAATTTGCAGCTTAAACGTGAACAGATCAGAATTGAGTTGTCTTCCGTAATTCCAAGGAAAGATAATCCATCCAGCTCAGTGAGAATCCTAGAAAAAAGACAAAATGAAGACCACGGCCAAAAAGTAACGAC]

[-] EMBL CD198072             [AGACTGTGCTTTTTTCGTAAACGAATTGGACAGGTGATTCCAGAAATTAAGTGAGTTATATTATCCAAATACGATTTTAATGGAAGCATATGGAATAGTGAGTACAGTGCTTTGTCATACACGATTATATATATTTCTAGATATTAGGTAGAGATCCGAATAGATCCTGTAAATACATAAAGTACGTGTGTTGTAGCATACAAACACGATATAATGAACAGAATAAAAATATGAAGTTATATTCCTCGCCGAATAAGATTATATACGGTTTTTGGAATGACAGATGGTTATATCGTATAGCCAAAATGAATATACAGTTATTTGATTACGAGTTATTGTATGAATATGATCATGTATACCATCAATAAGTTAAAATTAAGATCTTATCGTATAGCATAAAATTTGCAGCTTAAACGTGAACAGATCAGAATTGAGTTGTCTTCCGTAATTCCAAGGAAAGATAATCCATCCAGCTCAGTGAGAATCCTAGAAAAAAGACAAAATGAAGACCACGGCCAAAAAGTAACGAC]
[-] EMBL CD198105             [                                                                                                                                                                                                                                                                                                                                                                                                                                                          tCGTAATTCCAAGGAAAGATAATCCATCCAGCTCAGTGAGAATCCTAGAAAAAAGACAAAATGAAGACCACGGCCAAAAAGTAACGAC]




>consensus_5067#1
AGACTGTGCTTTTTTCGTAAACGAATTGGACAGGTGATTCCAGAAATTAAGTGAGTTATA
TTATCCAAATACGATTTTAATGGAAGCATATGGAATAGTGAGTACAGTGCTTTGTCATAC
ACGATTATATATATTTCTAGATATTAGGTAGAGATCCGAATAGATCCTGTAAATACATAA
AGTACGTGTGTTGTAGCATACAAACACGATATAATGAACAGAATAAAAATATGAAGTTAT
ATTCCTCGCCGAATAAGATTATATACGGTTTTTGGAATGACAGATGGTTATATCGTATAG
CCAAAATGAATATACAGTTATTTGATTACGAGTTATTGTATGAATATGATCATGTATACC
ATCAATAAGTTAAAATTAAGATCTTATCGTATAGCATAAAATTTGCAGCTTAAACGTGAA
CAGATCAGAATTGAGTTGTCTTCCGTAATTCCAAGGAAAGATAATCCATCCAGCTCAGTG
AGAATCCTAGAAAAAAGACAAAATGAAGACCACGGCCAAAAAGTAACGAC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5067#0      TGACGTATAGCTGGCGGATTGAACAAAATATTGGAAATAGAGATGAAAGAAAGAAAAAAT 60
consensus_5067#1      ------------------------------------------------------------
                                                                                  

consensus_5067#0      CAATGCCGAGGACTGAAGTCTAATCAAAACCTATGCTTAACACAAGGGTGGATGTATCGA 120
consensus_5067#1      ------------------------------------------------------------
                                                                                  

consensus_5067#0      GAGGATCGGTGAAAGTGTAGAAAAACAATGGATAAGAATAGCAGGAAGGTATTAGTGGTG 180
consensus_5067#1      ------------------------------------------------------------
                                                                                  

consensus_5067#0      ACAAAATATACTGTCATAAAAAATAAATAAATAAACCTATGACAGACTCACCGAATTGGA 240
consensus_5067#1      ---------------------------AGACTGTGCTTTTTTCGTA---AACGAATTGGA 30
                                                   * *   * * *  *  *   * *********

consensus_5067#0      CAGGTGATTCCAGAAATTAAGTGAGTTATATTATCCAAATACGATTTTAATGAAAGTATA 300
consensus_5067#1      CAGGTGATTCCAGAAATTAAGTGAGTTATATTATCCAAATACGATTTTAATGGAAGCATA 90
                      **************************************************** *** ***

consensus_5067#0      TGGAATAATGAGTACAGTGCTTTGTCATACACGATTATATATACTTCTAGATATTAGGTA 360
consensus_5067#1      TGGAATAGTGAGTACAGTGCTTTGTCATACACGATTATATATATTTCTAGATATTAGGTA 150
                      ******* *********************************** ****************

consensus_5067#0      GAGATCCGAATAGATCCTGTAAATACATAAAGTACGTGTGTTGTAGCATACAAACACGAT 420
consensus_5067#1      GAGATCCGAATAGATCCTGTAAATACATAAAGTACGTGTGTTGTAGCATACAAACACGAT 210
                      ************************************************************

consensus_5067#0      ATAATGAATAGAATACAAATATGAAATTATATTCCTCGCCGAATATGATTATATACGGTT 480
consensus_5067#1      ATAATGAACAGAATAAAAATATGAAGTTATATTCCTCGCCGAATAAGATTATATACGGTT 270
                      ******** ****** ********* ******************* **************

consensus_5067#0      TTTGGAATGACAGAGGAAGGTTATATCGTATAGCCAAAATGAATATACCATTATTTGATT 540
consensus_5067#1      TTTGGAATGACAGAT---GGTTATATCGTATAGCCAAAATGAATATACAGTTATTTGATT 327
                      **************    ******************************  **********

consensus_5067#0      ATGAGTTATTGTATGAATATGATCATATATACCATNCATA-------------------- 580
consensus_5067#1      ACGAGTTATTGTATGAATATGATCATGTATACCATCAATAAGTTAAAATTAAGATCTTAT 387
                      * ************************ ********  ***                    

consensus_5067#0      ------------------------------------------------------------
consensus_5067#1      CGTATAGCATAAAATTTGCAGCTTAAACGTGAACAGATCAGAATTGAGTTGTCTTCCGTA 447
                                                                                  

consensus_5067#0      ------------------------------------------------------------
consensus_5067#1      ATTCCAAGGAAAGATAATCCATCCAGCTCAGTGAGAATCCTAGAAAAAAGACAAAATGAA 507
                                                                                  

consensus_5067#0      -----------------------
consensus_5067#1      GACCACGGCCAAAAAGTAACGAC 530