These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5069#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 410 fasta sequence [AAGTATGCTGACGTAATCACAGCAAAATCTTCAGAGGTCAATATCCTTATACCTAAAGGAACTGATGATTTTGAAGAATTCGCAGTCCCAGAACAATTTAAGACAAACTTTACTGGAAAAGGATTGAAAACAGTGTGTAGTGATTCCAGATAAGAAATGCTACTTTAATGTTCGTCATACACACATGTCAACAATCTTGAAATTTTTCATTTCAAATAGCCACCTTATCTTGCTTCATGTACCAGCACAACATTTTTGTCCAGCGCAATAAAAAACTGCTTTTTTGATAGTGATATGGATGATTTAATTTGGTTGGACTGGGTCAATCTTTGACTGGCATATCAGGCACTTGTTGTTTAATCTCTTTTGAAAGTATTTGCTTTTTTATGGCTTGTTTAAAATATACCTGT] [+] EMBL AW061370 [AAGTATGCTGACGTAATCACAGCAAAATCTTCAGAGGTCAATATCCTTATACCTAAAGGAACTGATGATTTTGAAGAATTCGCAGTCCCAGAACAATTTAAGACAAACTTTACTGGAAAAGGATTGAAAACAGTGTGTAGTGATTCCAGATAAGAAATGCTACTTTAATGTTCGTCATACACACATGTCAACAATCTTGAAATTTTTCATTTCAAATAGCCACCTTATCTTGCTTCATGTACCAGCACAACATTTTTGTCCAGCGCAATAAAAAACTGCTTTTTTGATAGTGATATGGATGATTTAATTTGGTTGGACTGGGTCAATCTTTGACTGGCATATCAGGCACTTGTTGTTTAATCTCTTTTGAAAGTATTTGCTTTTTTATGGCTTGTTTAAAATATACCTGT] [-] EMBL CD116231 [ TCCAGATAAGAAATGCTACTTTAATGTTCGTCATACACACATGTCAACAATCTTGAAATTTTTCATTTCAAATAGCCACCTTA ] consensusID : consensus_5069#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 135 fasta sequence [TCAATATCCTTATACCTAAAGGAACTGATGATTTTGAAGAATTCGCAGTCCCAGTAACAATTTAAGTACAAACTTTACTGGAAAAGGATTGAAAACAGTGTGTAGTGATTCCAGATAAAGAATCGTCTAAGTCTG] [+] EMBL SM3761 [TCAATATCCTTATACCTAAAGGAACTGATGATTTTGAAGAATTCGCAGTCCCAGTAACAATTTAAGTACAAACTTTACTGGAAAAGGATTGAAAACAGTGTGTAGTGATTCCAGATAAAGAATCGTCTAAGTCTG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5069#0 AAGTATGCTGACGTAATCACAGCAAAATCTTCAGAGGTCAATATCCTTATACCTAAAGGA 60 consensus_5069#1 -------------------------------------TCAATATCCTTATACCTAAAGGA 23 *********************** consensus_5069#0 ACTGATGATTTTGAAGAATTCGCAGTCCCAG-AACAATTTAAG-ACAAACTTTACTGGAA 118 consensus_5069#1 ACTGATGATTTTGAAGAATTCGCAGTCCCAGTAACAATTTAAGTACAAACTTTACTGGAA 83 ******************************* *********** **************** consensus_5069#0 AAGGATTGAAAACAGTGTGTAGTGATTCCAGATAAGAAATGCTACTTTAATGTTCGTCAT 178 consensus_5069#1 AAGGATTGAAAACAGTGTGTAGTGATTCCAGATAAAGAAT----CGTCTAAGTCTG---- 135 *********************************** *** * * * ** * consensus_5069#0 ACACACATGTCAACAATCTTGAAATTTTTCATTTCAAATAGCCACCTTATCTTGCTTCAT 238 consensus_5069#1 ------------------------------------------------------------ consensus_5069#0 GTACCAGCACAACATTTTTGTCCAGCGCAATAAAAAACTGCTTTTTTGATAGTGATATGG 298 consensus_5069#1 ------------------------------------------------------------ consensus_5069#0 ATGATTTAATTTGGTTGGACTGGGTCAATCTTTGACTGGCATATCAGGCACTTGTTGTTT 358 consensus_5069#1 ------------------------------------------------------------ consensus_5069#0 AATCTCTTTTGAAAGTATTTGCTTTTTTATGGCTTGTTTAAAATATACCTGT 410 consensus_5069#1 ---------------------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||