cluster # 5069

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Schistosoma mansoni
cluster # 5069 cluster # 5069 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5069#0 length = 410 sequences # 2

consensus_5069#1 length = 135 sequences # 1

consensusID : consensus_5069#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 410
fasta sequence

                              [AAGTATGCTGACGTAATCACAGCAAAATCTTCAGAGGTCAATATCCTTATACCTAAAGGAACTGATGATTTTGAAGAATTCGCAGTCCCAGAACAATTTAAGACAAACTTTACTGGAAAAGGATTGAAAACAGTGTGTAGTGATTCCAGATAAGAAATGCTACTTTAATGTTCGTCATACACACATGTCAACAATCTTGAAATTTTTCATTTCAAATAGCCACCTTATCTTGCTTCATGTACCAGCACAACATTTTTGTCCAGCGCAATAAAAAACTGCTTTTTTGATAGTGATATGGATGATTTAATTTGGTTGGACTGGGTCAATCTTTGACTGGCATATCAGGCACTTGTTGTTTAATCTCTTTTGAAAGTATTTGCTTTTTTATGGCTTGTTTAAAATATACCTGT]

[+] EMBL AW061370             [AAGTATGCTGACGTAATCACAGCAAAATCTTCAGAGGTCAATATCCTTATACCTAAAGGAACTGATGATTTTGAAGAATTCGCAGTCCCAGAACAATTTAAGACAAACTTTACTGGAAAAGGATTGAAAACAGTGTGTAGTGATTCCAGATAAGAAATGCTACTTTAATGTTCGTCATACACACATGTCAACAATCTTGAAATTTTTCATTTCAAATAGCCACCTTATCTTGCTTCATGTACCAGCACAACATTTTTGTCCAGCGCAATAAAAAACTGCTTTTTTGATAGTGATATGGATGATTTAATTTGGTTGGACTGGGTCAATCTTTGACTGGCATATCAGGCACTTGTTGTTTAATCTCTTTTGAAAGTATTTGCTTTTTTATGGCTTGTTTAAAATATACCTGT]
[-] EMBL CD116231             [                                                                                                                                                TCCAGATAAGAAATGCTACTTTAATGTTCGTCATACACACATGTCAACAATCTTGAAATTTTTCATTTCAAATAGCCACCTTA                                                                                                                                                                                       ]




>consensus_5069#0
AAGTATGCTGACGTAATCACAGCAAAATCTTCAGAGGTCAATATCCTTATACCTAAAGGA
ACTGATGATTTTGAAGAATTCGCAGTCCCAGAACAATTTAAGACAAACTTTACTGGAAAA
GGATTGAAAACAGTGTGTAGTGATTCCAGATAAGAAATGCTACTTTAATGTTCGTCATAC
ACACATGTCAACAATCTTGAAATTTTTCATTTCAAATAGCCACCTTATCTTGCTTCATGT
ACCAGCACAACATTTTTGTCCAGCGCAATAAAAAACTGCTTTTTTGATAGTGATATGGAT
GATTTAATTTGGTTGGACTGGGTCAATCTTTGACTGGCATATCAGGCACTTGTTGTTTAA
TCTCTTTTGAAAGTATTTGCTTTTTTATGGCTTGTTTAAAATATACCTGT

consensusID : consensus_5069#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 135
fasta sequence

                              [TCAATATCCTTATACCTAAAGGAACTGATGATTTTGAAGAATTCGCAGTCCCAGTAACAATTTAAGTACAAACTTTACTGGAAAAGGATTGAAAACAGTGTGTAGTGATTCCAGATAAAGAATCGTCTAAGTCTG]

[+] EMBL SM3761               [TCAATATCCTTATACCTAAAGGAACTGATGATTTTGAAGAATTCGCAGTCCCAGTAACAATTTAAGTACAAACTTTACTGGAAAAGGATTGAAAACAGTGTGTAGTGATTCCAGATAAAGAATCGTCTAAGTCTG]




>consensus_5069#1
TCAATATCCTTATACCTAAAGGAACTGATGATTTTGAAGAATTCGCAGTCCCAGTAACAA
TTTAAGTACAAACTTTACTGGAAAAGGATTGAAAACAGTGTGTAGTGATTCCAGATAAAG
AATCGTCTAAGTCTG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5069#0      AAGTATGCTGACGTAATCACAGCAAAATCTTCAGAGGTCAATATCCTTATACCTAAAGGA 60
consensus_5069#1      -------------------------------------TCAATATCCTTATACCTAAAGGA 23
                                                           ***********************

consensus_5069#0      ACTGATGATTTTGAAGAATTCGCAGTCCCAG-AACAATTTAAG-ACAAACTTTACTGGAA 118
consensus_5069#1      ACTGATGATTTTGAAGAATTCGCAGTCCCAGTAACAATTTAAGTACAAACTTTACTGGAA 83
                      ******************************* *********** ****************

consensus_5069#0      AAGGATTGAAAACAGTGTGTAGTGATTCCAGATAAGAAATGCTACTTTAATGTTCGTCAT 178
consensus_5069#1      AAGGATTGAAAACAGTGTGTAGTGATTCCAGATAAAGAAT----CGTCTAAGTCTG---- 135
                      ***********************************  ***    * *  * **  *    

consensus_5069#0      ACACACATGTCAACAATCTTGAAATTTTTCATTTCAAATAGCCACCTTATCTTGCTTCAT 238
consensus_5069#1      ------------------------------------------------------------
                                                                                  

consensus_5069#0      GTACCAGCACAACATTTTTGTCCAGCGCAATAAAAAACTGCTTTTTTGATAGTGATATGG 298
consensus_5069#1      ------------------------------------------------------------
                                                                                  

consensus_5069#0      ATGATTTAATTTGGTTGGACTGGGTCAATCTTTGACTGGCATATCAGGCACTTGTTGTTT 358
consensus_5069#1      ------------------------------------------------------------
                                                                                  

consensus_5069#0      AATCTCTTTTGAAAGTATTTGCTTTTTTATGGCTTGTTTAAAATATACCTGT 410
consensus_5069#1      ----------------------------------------------------