cluster # 5072

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Schistosoma mansoni
cluster # 5072 cluster # 5072 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5072#0 length = 757 sequences # 2

consensus_5072#1 length = 436 sequences # 1

consensusID : consensus_5072#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 757
fasta sequence

                              [AATAAAGTATAACAACCAATTGGCTAGACTTTAGATAGTGCCACTTGGATGTTTGCTTGATTTTCATTCGGAGATCTATTGCATTATAGCTGATGTCACTTCGTGATGCGAGGCCCAACTTTTAATTTGTCAAACTGACTCTCAACCTTAGCCGTTAGTCTTTACCCCTAAGACTTATAGCTAGTCTACTTTGAACAAGACAAGTGATTAAAGAATAATCATGATTTAAAATTTTAATTATGCTACCAATGGATGTCGATGTTCATCCAAACAGTAGAAATAGTGGTTCCTCTGTTTACCATGGACAACGACCAAGTACAGATATACCTGATAATATAAATGTCTCAGTGGGTGATTCGAGCAACATTCGGTCGTCATATGTCGATTCATCTACGTCTGTAACAAGTACCATTCGAAGCGATATTTGTGCAAGTGACAATAGGATGCTTAATTCCCTGCATGAACGTGTCAATTTTTGTGAGTCTAATAATCCCGTATCTCGCTGTTGTTCATTTGGGGATGGGTTAATGAATAGTGTTCACAATTCATATGTTGCGTCGTCCGCTAAC-ATACANNATCGAGTGTTGTTCAACAGTCTAATGATCGTCTGGCATATACTGCTGAACGTCATCCTATTAGTTCATTCGAAGCTATGAATCGTTTCCGTAAAAATAAAGAATTATGTGATGTAGTGTTGCTGGTTGATGGTCGCGAAATTTACACACATCGTGTTGTGTTGGCTGCCTGTTCCGCTCAT]

[+] EMBL CD116211             [AATAAAGTATAACAACCAATTGGCTAGACTTTAGATAGTGCCACTTGGATGTTTGCTTGATTTTCATTCGGAGATCTATTGCATTATAGCTGATGTCACTTCGTGATGCGAGGCCCAACTTTTAATTTGTCAAACTGACTCTCAACCTTAGCCGTTAGTCTTTACCCCTAAGACTTATAGCTAGTCTACTTTGAACAAGACAAGTGATTAAAGAATAATCATGATTTAAAATTTTAATTATGCTACCAATGGATGTCGATGTTCATCCAAACAGTAGAAATAGTGGTTCCTCTGTTTACCATGGACAACGACCAAGTACAGATATACCTGATAATATAAATGTCTCAGTGGGTGATTCGAGCAACATTCGGTCGTCATATGTCGATTCATCTACGTCTGTAACAAGTACCATTCGAAGCGATATTTGTGCAAGTGACAATAGGATGCTTAATTCCCTGCATGAACGTGTCAATTTTTGTGAGTCTAATAATCCCGTATCTCGCTGTTGTTCATTTGGGGATGGGTTAATGAATAGTGTTCACAATTCATATGTTGCGTCGTCCGCTAAC ATACANNA                                                                                                                                                                                    ]
[-] EMBL CD116174             [                                                                                                                                                                                             tnTGACCAAGACAAGTGATTAAAGAATAATCATGATTTANAATTTTAATTATGCTACCAATGGATGTCGATGTTCATCCAAACAGTAGAAATAGTGGTTCCTCTGTTTACCATGGACAACGACCAAGTACAGATATACCTGATAATATAAATGTCTCAGTGGGTGATCCGAGCAACATTCGGTCGTCATATGTCGATTCATCTACGTCTGTAACAAGTACCATTCGAAGCGATATTTGTGCAAGTGACAATAGGATGCTTAATTCCCTGCATGAACGTGTCAATTTTTGTGAGTCTAATAATCCCGTATCTCGCTGTTGTTCATTTGGGGATGGGTTAATGAATAGTGTTCACAATTCATATGTTGCGTCGTCCGCTAACAATACAAAATCGAGTGTTGTTCAACAGTCTAATGATCGTCTGGCATATACTGCTGAACGTCATCCTATTAGTTCATTCGAAGCTATGAATCGTTTCCGTAAAAATAAAGAATTATGTGATGTAGTGTTGCTGGTTGATGGTCGCGAAATTTACACACATCGTGTTGTGTTGGCTGCCTGTTCCGCTCAT]




>consensus_5072#0
AATAAAGTATAACAACCAATTGGCTAGACTTTAGATAGTGCCACTTGGATGTTTGCTTGA
TTTTCATTCGGAGATCTATTGCATTATAGCTGATGTCACTTCGTGATGCGAGGCCCAACT
TTTAATTTGTCAAACTGACTCTCAACCTTAGCCGTTAGTCTTTACCCCTAAGACTTATAG
CTAGTCTACTTTGAACAAGACAAGTGATTAAAGAATAATCATGATTTAAAATTTTAATTA
TGCTACCAATGGATGTCGATGTTCATCCAAACAGTAGAAATAGTGGTTCCTCTGTTTACC
ATGGACAACGACCAAGTACAGATATACCTGATAATATAAATGTCTCAGTGGGTGATTCGA
GCAACATTCGGTCGTCATATGTCGATTCATCTACGTCTGTAACAAGTACCATTCGAAGCG
ATATTTGTGCAAGTGACAATAGGATGCTTAATTCCCTGCATGAACGTGTCAATTTTTGTG
AGTCTAATAATCCCGTATCTCGCTGTTGTTCATTTGGGGATGGGTTAATGAATAGTGTTC
ACAATTCATATGTTGCGTCGTCCGCTAACATACANNATCGAGTGTTGTTCAACAGTCTAA
TGATCGTCTGGCATATACTGCTGAACGTCATCCTATTAGTTCATTCGAAGCTATGAATCG
TTTCCGTAAAAATAAAGAATTATGTGATGTAGTGTTGCTGGTTGATGGTCGCGAAATTTA
CACACATCGTGTTGTGTTGGCTGCCTGTTCCGCTCAT

consensusID : consensus_5072#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 436
fasta sequence

                              [AAGCTATGAATCGTTTCCGTAAAAATAAAGAATTATCTGATGTAGTGTTGCTGGTTGATGGTCGCGAAATTTACACACATCGTGTTGTGTTGGCTGAACATTATGATTCACGTACACATAAATGGCATCTGGTAGCTCCGATGCATAAGAGACGTTGTGGCGTAGGTGTTGGAGTTGTCTATGATCTTCTGTATGCCGTTGGAGGACATGATGGACATAGTTATTTGAATTCAGTCGAAAGATATGATCCACATACAAATCAATGGTCATCAGATATTGCTTCAACTAGTACGTGTCGTACAAGTGTTGTGAGCGCNNNNATTAAATGGTTCCATGTATGCTGTTGGTGGACAAGATGGTGTGNCTTGTTTGATTTTGGTGAATGCTTTGACCCAAATGAAAAAAAGGGCTCAAGGTGCCAGTATGATTACTCGTC]

[+] EMBL CD118829             [AAGCTATGAATCGTTTCCGTAAAAATAAAGAATTATCTGATGTAGTGTTGCTGGTTGATGGTCGCGAAATTTACACACATCGTGTTGTGTTGGCTGAACATTATGATTCACGTACACATAAATGGCATCTGGTAGCTCCGATGCATAAGAGACGTTGTGGCGTAGGTGTTGGAGTTGTCTATGATCTTCTGTATGCCGTTGGAGGACATGATGGACATAGTTATTTGAATTCAGTCGAAAGATATGATCCACATACAAATCAATGGTCATCAGATATTGCTTCAACTAGTACGTGTCGTACAAGTGTTGTGAGCGCNNNNATTAAATGGTTCCATGTATGCTGTTGGTGGACAAGATGGTGTGNCTTGTTTGATTTTGGTGAATGCTTTGACCCAAATGAAAAAAAGGGCTCAAGGTGCCAGTATGATTACTCGTC]




>consensus_5072#1
AAGCTATGAATCGTTTCCGTAAAAATAAAGAATTATCTGATGTAGTGTTGCTGGTTGATG
GTCGCGAAATTTACACACATCGTGTTGTGTTGGCTGAACATTATGATTCACGTACACATA
AATGGCATCTGGTAGCTCCGATGCATAAGAGACGTTGTGGCGTAGGTGTTGGAGTTGTCT
ATGATCTTCTGTATGCCGTTGGAGGACATGATGGACATAGTTATTTGAATTCAGTCGAAA
GATATGATCCACATACAAATCAATGGTCATCAGATATTGCTTCAACTAGTACGTGTCGTA
CAAGTGTTGTGAGCGCNNNNATTAAATGGTTCCATGTATGCTGTTGGTGGACAAGATGGT
GTGNCTTGTTTGATTTTGGTGAATGCTTTGACCCAAATGAAAAAAAGGGCTCAAGGTGCC
AGTATGATTACTCGTC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5072#0      AATAAAGTATAACAACCAATTGGCTAGACTTTAGATAGTGCCACTTGGATGTTTGCTTGA 60
consensus_5072#1      ------------------------------------------------------------
                                                                                  

consensus_5072#0      TTTTCATTCGGAGATCTATTGCATTATAGCTGATGTCACTTCGTGATGCGAGGCCCAACT 120
consensus_5072#1      ------------------------------------------------------------
                                                                                  

consensus_5072#0      TTTAATTTGTCAAACTGACTCTCAACCTTAGCCGTTAGTCTTTACCCCTAAGACTTATAG 180
consensus_5072#1      ----------------------------AAGCTATGAATCGTT-TCCGTAAAAATAAAGA 31
                                                   ***  * * ** **  ** *** * * *   

consensus_5072#0      CTAGTCTACTTTGAACAAGACAAGTGATTAAAGAATAATCATGATTTAAAATTTTAATTA 240
consensus_5072#1      ATTATCTGATGTAGTGTTGCTGGTTGATGGTCGCGAAATTTACACACATCGTGTTGTGTT 91
                       *  ***  * *      *     ****    *   ***    *   *   * **   * 

consensus_5072#0      TGCTACCAATGGATGTCGATGTTCATCCAAACAGTAGAAATAGTGGTTCCTCTGTTTACC 300
consensus_5072#1      GGCTGAACATTATGATTCACGTACACATAAATGGCATC--TGGTAGCTCCGATG-----C 144
                       ***    **     *  * ** **   ***  * *    * ** * ***  **     *

consensus_5072#0      ATGGACAACGACCAAGTACAGATATACCTGATAATATAAATGTCTCAGTGGGTGATTCGA 360
consensus_5072#1      ATAAGAGACGTTGTGGCGTAGGTGT-TGGAGTTGTCTATGATCTTCTGTATGCCGTTGGA 203
                      **     ***     *   ** * *      *  * **      ** **  *   ** **

consensus_5072#0      GCAACATTCGGTCGTCATATGTCGATTCATCTACGTCTGTAACAAGTACCATTCGAAGCG 420
consensus_5072#1      G-GACAT--GATGGACATA-GTTATTTGAATTCAGTC---GAAAGATATGATCCACATAC 256
                      *  ****  * * * **** **   ** *  *  ***    * *  **  ** *  *   

consensus_5072#0      ATATTTGTGCAAGTGACAATAGGATGCTTAATTCCCTGCATGAACGTGTCAATTTTTGTG 480
consensus_5072#1      AAATCAATG---GTCATCAGATATTGCTTCAACTAGTACGTGT-CGTA-CAAGTGTTGTG 311
                      * **   **   ** *  * *   ***** *     * * **  ***  *** * *****

consensus_5072#0      AGTCTAATAATCCCGTATCTCGCTGTTGTTCATTTGGGGATGGGTTAATGAATAGTGTTC 540
consensus_5072#1      AGCGCNNNNATTAAATGGTTCCATGTATGCTGTTGGTGGACAAGATGGTGTGNCTTGTTT 371
                      **       **    *   **  ***      ** * ***   * *  **     **** 

consensus_5072#0      ACAATTCATATGTTGCGTCGTCCGCTAACATACANNATCGAGTGTTGTTCAACAGTCTAA 600
consensus_5072#1      G-ATTTTGGTGAATGCTTTGACCC---AAATGAAAAAAAGGGCTCAAGGTGCCAGTATGA 427
                        * **       *** * * **    * **  *  *  * *          **** * *

consensus_5072#0      TGA-TCGTCTGGCATATACTGCTGAACGTCATCCTATTAGTTCATTCGAAGCTATGAATC 659
consensus_5072#1      TTACTCGTC--------------------------------------------------- 436
                      * * *****                                                   

consensus_5072#0      GTTTCCGTAAAAATAAAGAATTATGTGATGTAGTGTTGCTGGTTGATGGTCGCGAAATTT 719
consensus_5072#1      ------------------------------------------------------------
                                                                                  

consensus_5072#0      ACACACATCGTGTTGTGTTGGCTGCCTGTTCCGCTCAT 757
consensus_5072#1      --------------------------------------