cluster # 5075

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Schistosoma mansoni
cluster # 5075 cluster # 5075 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5075#0 length = 563 sequences # 2

consensus_5075#1 length = 456 sequences # 1

consensusID : consensus_5075#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 563
fasta sequence

                              [TACCAAGTAAACGTGTAAGACTTGTTAGAAAAGCAATACTACTTAATACAAATTGTTGACAATATTCTGTAGATTGTTTAGATATTGAATTTGAATGTCCAATATCAGTATTATTATTTACTGATGATAACCAATTAGCTTGTTTTGGATTTGATAATCTGATCGATATTAAATCAACTAAACCGCTACTTACAATGTAGCTAAGTAAATCTTGAAGTCGTTGTGAATCAATTCTAACATGTTGTTGTTGTTCATGGTAATCATCATCATCAAATAGAGTTTTGGTTGTTATCACTGAGGTTAATGATGTTGTCGATGATGAAGGTGTTGTCGTTGTTGTTGCGGTAAATCCATTTATTCCACCTGATATACTACTACTACTACGACTACTAATATTATGATTATTAGTAGTAGTATTGAATTCAGTAGAATAATAGTTTAATTTGTAGAAACCATTTAATAGATTAGTTAAACAATTTAATAAATCCAATGTACAAGAATAATTAGAAACTGATGAATCTTGACTGCATTGTTCAATGAATGTTGATGACGATTTCTGATCT]

[+] EMBL CD137783             [TACCAAGTAAACGTGTAAGACTTGTTAGAAAAGCAATACTACTTAATACAAATTGTTGACAATATTCTGTAGATTGTTTAGATATTGAATTTGAATGTCCAATATCAGTATTATTATTTACTGATGATAACCAATTAGCTTGTTTTGGATTTGATAATCTGATCGATATTAAATCAACTAAACCGCTACTTACAATGTAGCTAAGTAAATCTTGAAGTCGTTGTGAATCAATTCTAACATGTTGTTGTTGTTCATGGTAATCATCATCATCAAATAGAGTTTTGGTTGTTATCACTGAGGTTAATGATGTTGTCGATGATGAAGGTGTTGTCGTTGTTGTTGCGGTAAATCCATTTATTCCACCTGATATACTACTACTACTACGACTACTAATATTATGATTATTAGTAGTAGTATTGAATTCAGTAGAATAATAGTTTAATTTGTAGAAACCATTTAATAGATTAGTTAAACAATTTAATAAATCCAATGTACAAGAATAA                                                            ]
[+] EMBL CD161390             [                                                                                                                                                                                                                                                                                                         AGGTTAATGATGTTGTCGATGATGAAGGTGTTGTCGTTGTTGTTGCGGTAAATCCATTTATTCCACCTGATATACTACTACTACTACGACTACTAATATTATGATTATTAGTAGTAGTATTGAATTCAGTAGAATAATAGTTTAATTTGTAGAAACCATTTAATAGATTAGTTAAACAATTTAATAAATCCAATGTACGAGAATAATTAGAAACTGATGAATCTTGACTGCATTGTTCAATGAATGTTGATGACGATTTCTGATCT]




>consensus_5075#0
TACCAAGTAAACGTGTAAGACTTGTTAGAAAAGCAATACTACTTAATACAAATTGTTGAC
AATATTCTGTAGATTGTTTAGATATTGAATTTGAATGTCCAATATCAGTATTATTATTTA
CTGATGATAACCAATTAGCTTGTTTTGGATTTGATAATCTGATCGATATTAAATCAACTA
AACCGCTACTTACAATGTAGCTAAGTAAATCTTGAAGTCGTTGTGAATCAATTCTAACAT
GTTGTTGTTGTTCATGGTAATCATCATCATCAAATAGAGTTTTGGTTGTTATCACTGAGG
TTAATGATGTTGTCGATGATGAAGGTGTTGTCGTTGTTGTTGCGGTAAATCCATTTATTC
CACCTGATATACTACTACTACTACGACTACTAATATTATGATTATTAGTAGTAGTATTGA
ATTCAGTAGAATAATAGTTTAATTTGTAGAAACCATTTAATAGATTAGTTAAACAATTTA
ATAAATCCAATGTACAAGAATAATTAGAAACTGATGAATCTTGACTGCATTGTTCAATGA
ATGTTGATGACGATTTCTGATCT

consensusID : consensus_5075#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 456
fasta sequence

                              [GATTACAGTGAATAGTATGTCGATTATTTGGAATAGATAAGGTGAATTGTATAACTAAACAATCGACAAGTATTGAAACATTATTTGATAATAACATATGAATAGAAGCAGCAATATTTGAAGTGCATATTGTTTGAAGTAGACAACAAGGTATTGTATATGTTTTCTCAGGGAGCTAATTGTTTTGAACTGGGCTTCTGTTCTCGAATTAAACCAATCAGATTCACCAGAATCGACAACAAACCATTAGCGAGACAAACTTGTTGATCTGATAAATTAACTGACTGACTTTGATTTTCGTTATCTGATAAAATGGGATGAGTTTTTGATTGATCATTAGAAATACATCGTAATAAACCATTTAATAGATTAGTTAAACAGATTTAATAAATCCAATGTACAAGAATAATTAGAAACTGGTGAATCTTGACTGCATTGTTCAATGAATGTTGATGA]

[-] EMBL CD116140             [GATTACAGTGAATAGTATGTCGATTATTTGGAATAGATAAGGTGAATTGTATAACTAAACAATCGACAAGTATTGAAACATTATTTGATAATAACATATGAATAGAAGCAGCAATATTTGAAGTGCATATTGTTTGAAGTAGACAACAAGGTATTGTATATGTTTTCTCAGGGAGCTAATTGTTTTGAACTGGGCTTCTGTTCTCGAATTAAACCAATCAGATTCACCAGAATCGACAACAAACCATTAGCGAGACAAACTTGTTGATCTGATAAATTAACTGACTGACTTTGATTTTCGTTATCTGATAAAATGGGATGAGTTTTTGATTGATCATTAGAAATACATCGTAATAAACCATTTAATAGATTAGTTAAACAGATTTAATAAATCCAATGTACAAGAATAATTAGAAACTGGTGAATCTTGACTGCATTGTTCAATGAATGTTGATGA]




>consensus_5075#1
GATTACAGTGAATAGTATGTCGATTATTTGGAATAGATAAGGTGAATTGTATAACTAAAC
AATCGACAAGTATTGAAACATTATTTGATAATAACATATGAATAGAAGCAGCAATATTTG
AAGTGCATATTGTTTGAAGTAGACAACAAGGTATTGTATATGTTTTCTCAGGGAGCTAAT
TGTTTTGAACTGGGCTTCTGTTCTCGAATTAAACCAATCAGATTCACCAGAATCGACAAC
AAACCATTAGCGAGACAAACTTGTTGATCTGATAAATTAACTGACTGACTTTGATTTTCG
TTATCTGATAAAATGGGATGAGTTTTTGATTGATCATTAGAAATACATCGTAATAAACCA
TTTAATAGATTAGTTAAACAGATTTAATAAATCCAATGTACAAGAATAATTAGAAACTGG
TGAATCTTGACTGCATTGTTCAATGAATGTTGATGA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5075#0      TACCAAGTAAACGTGTAAGACTTGTTAGAAAAGCAATACTACTTAATACAAATTGTTGAC 60
consensus_5075#1      ------------------------------------------------------------
                                                                                  

consensus_5075#0      AATATTCTGTAGATTGTTTAGATATTGAAT-TTGAATGTCCAATATCAGTATTATTATTT 119
consensus_5075#1      -----------GATTACAGTGA-ATAGTATGTCGATTATTTGGAATAGATAAGGTGAATT 48
                                 ****     ** ** * ** * ** * *     **   **   * * **

consensus_5075#0      ACTGATGATAACCAATTAGCTTGTTTTGGATTTGATAATCTGATCGATATTAAATCAACT 179
consensus_5075#1      G-TATAACTAAACAATCGACAAGTATTGAAAC--ATTATTTGAT-AATAACATATGAATA 104
                        *     *** ****   *  ** *** *    ** ** ****  ***  * ** **  

consensus_5075#0      AAACCGCTACTTACAATGTAGCTAAGTAAATCTTGAAGTCGTTGTGAATCAATTCTAACA 239
consensus_5075#1      GAAGCAGCA---ATATTTGAAGTGCATATTGTTTGAAGTAGACAACAAGGTATTGTA-TA 160
                       ** *   *   * * *  *  *   **    ******* *     **   *** **  *

consensus_5075#0      TGTTGTTGTTGTTCATGGTAATCATCATCATCAAATAGAGTTTTGGTTGTTATCACTGAG 299
consensus_5075#1      TGTTTTC-----TCAGGGAGCTAATTGTT-TTGAACTGGGCTTCTGTTCTCG--AATTAA 212
                      **** *      *** **   * **  *  *  **  * * **  *** *    * * * 

consensus_5075#0      GTTAATGATGTTGTCGATGATGAAGGTGTTGTCGTTGTTGTTGCGGTAAATCCATTTATT 359
consensus_5075#1      ACCAATCAGATTCACCAGAATCGACAACAAACCATTAGCG---AGACAAACTTGTTGATC 269
                         *** *  **  * *  **  *        * **   *    *  ***    ** ** 

consensus_5075#0      CCACCTGATATACTACTACTACTACGACTACTAATATTATGATTATTAGTAGTAGTATTG 419
consensus_5075#1      TGATAAATTAACTGACTG--ACTTTGATTTTCGTTATCTGATAAAATGGGATGAGTTTTT 327
                        *     **    ***   ***  ** *     ***       * * * *  *** ** 

consensus_5075#0      AATTCAGTAGAATAATAGTTTAATTTGTAGAAACCATTTAATAGATTAGTTAAACA-ATT 478
consensus_5075#1      GATTGATC---ATTAGAAATACATCGTAATAAACCATTTAATAGATTAGTTAAACAGATT 384
                       *** *     ** * *  *  **    * ************************** ***

consensus_5075#0      TAATAAATCCAATGTACAAGAATAATTAGAAACTGATGAATCTTGACTGCATTGTTCAAT 538
consensus_5075#1      TAATAAATCCAATGTACAAGAATAATTAGAAACTGGTGAATCTTGACTGCATTGTTCAAT 444
                      *********************************** ************************

consensus_5075#0      GAATGTTGATGACGATTTCTGATCT 563
consensus_5075#1      GAATGTTGATGA------------- 456
                      ************