These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5075#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 563 fasta sequence [TACCAAGTAAACGTGTAAGACTTGTTAGAAAAGCAATACTACTTAATACAAATTGTTGACAATATTCTGTAGATTGTTTAGATATTGAATTTGAATGTCCAATATCAGTATTATTATTTACTGATGATAACCAATTAGCTTGTTTTGGATTTGATAATCTGATCGATATTAAATCAACTAAACCGCTACTTACAATGTAGCTAAGTAAATCTTGAAGTCGTTGTGAATCAATTCTAACATGTTGTTGTTGTTCATGGTAATCATCATCATCAAATAGAGTTTTGGTTGTTATCACTGAGGTTAATGATGTTGTCGATGATGAAGGTGTTGTCGTTGTTGTTGCGGTAAATCCATTTATTCCACCTGATATACTACTACTACTACGACTACTAATATTATGATTATTAGTAGTAGTATTGAATTCAGTAGAATAATAGTTTAATTTGTAGAAACCATTTAATAGATTAGTTAAACAATTTAATAAATCCAATGTACAAGAATAATTAGAAACTGATGAATCTTGACTGCATTGTTCAATGAATGTTGATGACGATTTCTGATCT] [+] EMBL CD137783 [TACCAAGTAAACGTGTAAGACTTGTTAGAAAAGCAATACTACTTAATACAAATTGTTGACAATATTCTGTAGATTGTTTAGATATTGAATTTGAATGTCCAATATCAGTATTATTATTTACTGATGATAACCAATTAGCTTGTTTTGGATTTGATAATCTGATCGATATTAAATCAACTAAACCGCTACTTACAATGTAGCTAAGTAAATCTTGAAGTCGTTGTGAATCAATTCTAACATGTTGTTGTTGTTCATGGTAATCATCATCATCAAATAGAGTTTTGGTTGTTATCACTGAGGTTAATGATGTTGTCGATGATGAAGGTGTTGTCGTTGTTGTTGCGGTAAATCCATTTATTCCACCTGATATACTACTACTACTACGACTACTAATATTATGATTATTAGTAGTAGTATTGAATTCAGTAGAATAATAGTTTAATTTGTAGAAACCATTTAATAGATTAGTTAAACAATTTAATAAATCCAATGTACAAGAATAA ] [+] EMBL CD161390 [ AGGTTAATGATGTTGTCGATGATGAAGGTGTTGTCGTTGTTGTTGCGGTAAATCCATTTATTCCACCTGATATACTACTACTACTACGACTACTAATATTATGATTATTAGTAGTAGTATTGAATTCAGTAGAATAATAGTTTAATTTGTAGAAACCATTTAATAGATTAGTTAAACAATTTAATAAATCCAATGTACGAGAATAATTAGAAACTGATGAATCTTGACTGCATTGTTCAATGAATGTTGATGACGATTTCTGATCT] consensusID : consensus_5075#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 456 fasta sequence [GATTACAGTGAATAGTATGTCGATTATTTGGAATAGATAAGGTGAATTGTATAACTAAACAATCGACAAGTATTGAAACATTATTTGATAATAACATATGAATAGAAGCAGCAATATTTGAAGTGCATATTGTTTGAAGTAGACAACAAGGTATTGTATATGTTTTCTCAGGGAGCTAATTGTTTTGAACTGGGCTTCTGTTCTCGAATTAAACCAATCAGATTCACCAGAATCGACAACAAACCATTAGCGAGACAAACTTGTTGATCTGATAAATTAACTGACTGACTTTGATTTTCGTTATCTGATAAAATGGGATGAGTTTTTGATTGATCATTAGAAATACATCGTAATAAACCATTTAATAGATTAGTTAAACAGATTTAATAAATCCAATGTACAAGAATAATTAGAAACTGGTGAATCTTGACTGCATTGTTCAATGAATGTTGATGA] [-] EMBL CD116140 [GATTACAGTGAATAGTATGTCGATTATTTGGAATAGATAAGGTGAATTGTATAACTAAACAATCGACAAGTATTGAAACATTATTTGATAATAACATATGAATAGAAGCAGCAATATTTGAAGTGCATATTGTTTGAAGTAGACAACAAGGTATTGTATATGTTTTCTCAGGGAGCTAATTGTTTTGAACTGGGCTTCTGTTCTCGAATTAAACCAATCAGATTCACCAGAATCGACAACAAACCATTAGCGAGACAAACTTGTTGATCTGATAAATTAACTGACTGACTTTGATTTTCGTTATCTGATAAAATGGGATGAGTTTTTGATTGATCATTAGAAATACATCGTAATAAACCATTTAATAGATTAGTTAAACAGATTTAATAAATCCAATGTACAAGAATAATTAGAAACTGGTGAATCTTGACTGCATTGTTCAATGAATGTTGATGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5075#0 TACCAAGTAAACGTGTAAGACTTGTTAGAAAAGCAATACTACTTAATACAAATTGTTGAC 60 consensus_5075#1 ------------------------------------------------------------ consensus_5075#0 AATATTCTGTAGATTGTTTAGATATTGAAT-TTGAATGTCCAATATCAGTATTATTATTT 119 consensus_5075#1 -----------GATTACAGTGA-ATAGTATGTCGATTATTTGGAATAGATAAGGTGAATT 48 **** ** ** * ** * ** * * ** ** * * ** consensus_5075#0 ACTGATGATAACCAATTAGCTTGTTTTGGATTTGATAATCTGATCGATATTAAATCAACT 179 consensus_5075#1 G-TATAACTAAACAATCGACAAGTATTGAAAC--ATTATTTGAT-AATAACATATGAATA 104 * *** **** * ** *** * ** ** **** *** * ** ** consensus_5075#0 AAACCGCTACTTACAATGTAGCTAAGTAAATCTTGAAGTCGTTGTGAATCAATTCTAACA 239 consensus_5075#1 GAAGCAGCA---ATATTTGAAGTGCATATTGTTTGAAGTAGACAACAAGGTATTGTA-TA 160 ** * * * * * * * ** ******* * ** *** ** * consensus_5075#0 TGTTGTTGTTGTTCATGGTAATCATCATCATCAAATAGAGTTTTGGTTGTTATCACTGAG 299 consensus_5075#1 TGTTTTC-----TCAGGGAGCTAATTGTT-TTGAACTGGGCTTCTGTTCTCG--AATTAA 212 **** * *** ** * ** * * ** * * ** *** * * * * consensus_5075#0 GTTAATGATGTTGTCGATGATGAAGGTGTTGTCGTTGTTGTTGCGGTAAATCCATTTATT 359 consensus_5075#1 ACCAATCAGATTCACCAGAATCGACAACAAACCATTAGCG---AGACAAACTTGTTGATC 269 *** * ** * * ** * * ** * * *** ** ** consensus_5075#0 CCACCTGATATACTACTACTACTACGACTACTAATATTATGATTATTAGTAGTAGTATTG 419 consensus_5075#1 TGATAAATTAACTGACTG--ACTTTGATTTTCGTTATCTGATAAAATGGGATGAGTTTTT 327 * ** *** *** ** * *** * * * * *** ** consensus_5075#0 AATTCAGTAGAATAATAGTTTAATTTGTAGAAACCATTTAATAGATTAGTTAAACA-ATT 478 consensus_5075#1 GATTGATC---ATTAGAAATACATCGTAATAAACCATTTAATAGATTAGTTAAACAGATT 384 *** * ** * * * ** * ************************** *** consensus_5075#0 TAATAAATCCAATGTACAAGAATAATTAGAAACTGATGAATCTTGACTGCATTGTTCAAT 538 consensus_5075#1 TAATAAATCCAATGTACAAGAATAATTAGAAACTGGTGAATCTTGACTGCATTGTTCAAT 444 *********************************** ************************ consensus_5075#0 GAATGTTGATGACGATTTCTGATCT 563 consensus_5075#1 GAATGTTGATGA------------- 456 ************ |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||