cluster # 5078

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Schistosoma mansoni
cluster # 5078 cluster # 5078 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5078#0 length = 525 sequences # 1

consensus_5078#1 length = 450 sequences # 2

consensusID : consensus_5078#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 525
fasta sequence

                              [GAATTCGGACGAGGTGCTAAAACAAACAAGACAGTCAGGCAAACACAACTGACCTACAACAACCACCTCTCAGTTGGCAGCTGTAAAATGCATTGTCATTTGTGTGTATCTTTCAGGTTGCTTATTTTTTCTTTCAATTTGCATTTCTGAATACGATGTGTTTTTATTTACTTCTCTCCTTATGTGCCAACCACTACTACTTTCTTCTTTTTGTCTAATGGGAGGACCATTATAGTCTTCTTCTTTCATTGTAATGCTTTATCAAATAATCGTAGCAATAAGAACTATTATCATTATTATCTGCTTTCGTCTTAACTTCTTTGTTTCCTATGGGCTGTGTTTTAATAATCAACGTTGCCTAATAGTACTGGTCGTTATAATTGCCAGTAGATTGATAAATACTACTACTAATGATAATAATAATACATTTTTGTACAGTACATATGCATTAATTCATGTATTATTATTATTATTATTAAAGACGTTAATTATAAGTGCTACTATCACTATTACTACTATCATTAT]

[+] EMBL CD083583             [GAATTCGGACGAGGTGCTAAAACAAACAAGACAGTCAGGCAAACACAACTGACCTACAACAACCACCTCTCAGTTGGCAGCTGTAAAATGCATTGTCATTTGTGTGTATCTTTCAGGTTGCTTATTTTTTCTTTCAATTTGCATTTCTGAATACGATGTGTTTTTATTTACTTCTCTCCTTATGTGCCAACCACTACTACTTTCTTCTTTTTGTCTAATGGGAGGACCATTATAGTCTTCTTCTTTCATTGTAATGCTTTATCAAATAATCGTAGCAATAAGAACTATTATCATTATTATCTGCTTTCGTCTTAACTTCTTTGTTTCCTATGGGCTGTGTTTTAATAATCAACGTTGCCTAATAGTACTGGTCGTTATAATTGCCAGTAGATTGATAAATACTACTACTAATGATAATAATAATACATTTTTGTACAGTACATATGCATTAATTCATGTATTATTATTATTATTATTAAAGACGTTAATTATAAGTGCTACTATCACTATTACTACTATCATTAT]




>consensus_5078#0
GAATTCGGACGAGGTGCTAAAACAAACAAGACAGTCAGGCAAACACAACTGACCTACAAC
AACCACCTCTCAGTTGGCAGCTGTAAAATGCATTGTCATTTGTGTGTATCTTTCAGGTTG
CTTATTTTTTCTTTCAATTTGCATTTCTGAATACGATGTGTTTTTATTTACTTCTCTCCT
TATGTGCCAACCACTACTACTTTCTTCTTTTTGTCTAATGGGAGGACCATTATAGTCTTC
TTCTTTCATTGTAATGCTTTATCAAATAATCGTAGCAATAAGAACTATTATCATTATTAT
CTGCTTTCGTCTTAACTTCTTTGTTTCCTATGGGCTGTGTTTTAATAATCAACGTTGCCT
AATAGTACTGGTCGTTATAATTGCCAGTAGATTGATAAATACTACTACTAATGATAATAA
TAATACATTTTTGTACAGTACATATGCATTAATTCATGTATTATTATTATTATTATTAAA
GACGTTAATTATAAGTGCTACTATCACTATTACTACTATCATTAT

consensusID : consensus_5078#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 450
fasta sequence

                              [CCCAAGAAATTAGCTCTCATTCACATTGTCTTTGCTAAAACAAACAGGACAGTCAAGGCAAACGCAACTGACCTACAACAACCACCTCTCAGTTGGCAGCTGTAAAATGCATTGTCATTTGTGTGTATCTTTCAGGTTGCTTATTTTTTCTTTCAATTTGCATTTCTGAATACGATGTGTTTTTATTTACTTCTCTCCTTATGTGCCAACCACTACTACTTTCTTCTTTTTGTCTAATGGGAGGACCATTATAGTCTTCTTTCATTGTAATGCTTTATCAAATAATCGTAGCAATAAGAACTATTATCATTATTATCTGCTTTCGTCTTAACTTCTTTGTTTCCTATGGGCTGTGTTTTAATAATCAACGTTGCCTAATAGTACTGGTCGTTATAATTGCCAGTAGATTGATAAATACTACTACTAATGATAATAATAATACATTTTTGT]

[+] EMBL CD114686             [CCCAAGAAATTAGCTCTCATTCACATTGTCTTTGCTAAAACAAACAGGACAGTCAAGGCAAACGCAACTGACCTACAACAACCACCTCTCAGTTGGCAGCTGTAAAATGCATTGTCATTTGTGTGTATCTTTCAGGTTGCTTATTTTTTCTTTCAATTTGCATTTCTGAATACGATGTGTTTTTATTTACTTCTCTCCTTATGTGCCAACCACTACTACTTTCTTCTTTTTGTCTAATGGGAGGACCATTATAGTCTTCTTTCATTGTAATGCTTTATCAAATAATCGTAGCAATAAGAACTATTATCATTATTATCTGCTTTCGTCTTAACTTCTTTGTTTCCTATGGGCTGTGTTTTAATAATCAACGTTGCCTAATAGTACTGGTCGTTATAATTGCCAGTAGATTGATAAATACTAC                             ]
[-] EMBL CD114802             [ CCAAGAAATTAGCTCTCATTCACATTGTCTTTGCTAAAACAAACAAGACAGTCAAGGCAAACGCAACTGACCTACAACAACCACCTCTCAGTTGGCAGCTGTAAAATGCATTGTCATTTGTGTGTATCTTTCAGGTTGCTTATTTTTTCTTTCAATTTGCATTTCTGAATACGATGTGTTTTTATTTACTTCTCTCCTTATGTGCCAACCACTACTACTTTCTTCTTTTTGTCTAATGGGAGGACCATTATAGTCTTCTTTCATTGTAATGCTTTATCAAATAATCGTAGCAATAAGAACTATTATCATTATTATCTGCTTTCGTCTTAACTTCTTTGTTTCCTATGGGCTGTGTTTTAATAATCAACGTTGCCTAATAGTACTGGTCGTTATAATTGCCAGTAGATTGATAAATACTACTACTAATGATAATAATAATACATTTTTGT]




>consensus_5078#1
CCCAAGAAATTAGCTCTCATTCACATTGTCTTTGCTAAAACAAACAGGACAGTCAAGGCA
AACGCAACTGACCTACAACAACCACCTCTCAGTTGGCAGCTGTAAAATGCATTGTCATTT
GTGTGTATCTTTCAGGTTGCTTATTTTTTCTTTCAATTTGCATTTCTGAATACGATGTGT
TTTTATTTACTTCTCTCCTTATGTGCCAACCACTACTACTTTCTTCTTTTTGTCTAATGG
GAGGACCATTATAGTCTTCTTTCATTGTAATGCTTTATCAAATAATCGTAGCAATAAGAA
CTATTATCATTATTATCTGCTTTCGTCTTAACTTCTTTGTTTCCTATGGGCTGTGTTTTA
ATAATCAACGTTGCCTAATAGTACTGGTCGTTATAATTGCCAGTAGATTGATAAATACTA
CTACTAATGATAATAATAATACATTTTTGT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5078#0      ----------------GAATTCGGACGAGGT--GCTAAAACAAACAAGACAGTCA-GGCA 41
consensus_5078#1      CCCAAGAAATTAGCTCTCATTCACATTGTCTTTGCTAAAACAAACAGGACAGTCAAGGCA 60
                                        ****  *     *  ************* ******** ****

consensus_5078#0      AACACAACTGACCTACAACAACCACCTCTCAGTTGGCAGCTGTAAAATGCATTGTCATTT 101
consensus_5078#1      AACGCAACTGACCTACAACAACCACCTCTCAGTTGGCAGCTGTAAAATGCATTGTCATTT 120
                      *** ********************************************************

consensus_5078#0      GTGTGTATCTTTCAGGTTGCTTATTTTTTCTTTCAATTTGCATTTCTGAATACGATGTGT 161
consensus_5078#1      GTGTGTATCTTTCAGGTTGCTTATTTTTTCTTTCAATTTGCATTTCTGAATACGATGTGT 180
                      ************************************************************

consensus_5078#0      TTTTATTTACTTCTCTCCTTATGTGCCAACCACTACTACTTTCTTCTTTTTGTCTAATGG 221
consensus_5078#1      TTTTATTTACTTCTCTCCTTATGTGCCAACCACTACTACTTTCTTCTTTTTGTCTAATGG 240
                      ************************************************************

consensus_5078#0      GAGGACCATTATAGTCTTCTTCTTTCATTGTAATGCTTTATCAAATAATCGTAGCAATAA 281
consensus_5078#1      GAGGACCATTATAGTCTTCTT---TCATTGTAATGCTTTATCAAATAATCGTAGCAATAA 297
                      *********************   ************************************

consensus_5078#0      GAACTATTATCATTATTATCTGCTTTCGTCTTAACTTCTTTGTTTCCTATGGGCTGTGTT 341
consensus_5078#1      GAACTATTATCATTATTATCTGCTTTCGTCTTAACTTCTTTGTTTCCTATGGGCTGTGTT 357
                      ************************************************************

consensus_5078#0      TTAATAATCAACGTTGCCTAATAGTACTGGTCGTTATAATTGCCAGTAGATTGATAAATA 401
consensus_5078#1      TTAATAATCAACGTTGCCTAATAGTACTGGTCGTTATAATTGCCAGTAGATTGATAAATA 417
                      ************************************************************

consensus_5078#0      CTACTACTAATGATAATAATAATACATTTTTGTACAGTACATATGCATTAATTCATGTAT 461
consensus_5078#1      CTACTACTAATGATAATAATAATACATTTTTGT--------------------------- 450
                      *********************************                           

consensus_5078#0      TATTATTATTATTATTAAAGACGTTAATTATAAGTGCTACTATCACTATTACTACTATCA 521
consensus_5078#1      ------------------------------------------------------------
                                                                                  

consensus_5078#0      TTAT 525
consensus_5078#1      ----