These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5078#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 525 fasta sequence [GAATTCGGACGAGGTGCTAAAACAAACAAGACAGTCAGGCAAACACAACTGACCTACAACAACCACCTCTCAGTTGGCAGCTGTAAAATGCATTGTCATTTGTGTGTATCTTTCAGGTTGCTTATTTTTTCTTTCAATTTGCATTTCTGAATACGATGTGTTTTTATTTACTTCTCTCCTTATGTGCCAACCACTACTACTTTCTTCTTTTTGTCTAATGGGAGGACCATTATAGTCTTCTTCTTTCATTGTAATGCTTTATCAAATAATCGTAGCAATAAGAACTATTATCATTATTATCTGCTTTCGTCTTAACTTCTTTGTTTCCTATGGGCTGTGTTTTAATAATCAACGTTGCCTAATAGTACTGGTCGTTATAATTGCCAGTAGATTGATAAATACTACTACTAATGATAATAATAATACATTTTTGTACAGTACATATGCATTAATTCATGTATTATTATTATTATTATTAAAGACGTTAATTATAAGTGCTACTATCACTATTACTACTATCATTAT] [+] EMBL CD083583 [GAATTCGGACGAGGTGCTAAAACAAACAAGACAGTCAGGCAAACACAACTGACCTACAACAACCACCTCTCAGTTGGCAGCTGTAAAATGCATTGTCATTTGTGTGTATCTTTCAGGTTGCTTATTTTTTCTTTCAATTTGCATTTCTGAATACGATGTGTTTTTATTTACTTCTCTCCTTATGTGCCAACCACTACTACTTTCTTCTTTTTGTCTAATGGGAGGACCATTATAGTCTTCTTCTTTCATTGTAATGCTTTATCAAATAATCGTAGCAATAAGAACTATTATCATTATTATCTGCTTTCGTCTTAACTTCTTTGTTTCCTATGGGCTGTGTTTTAATAATCAACGTTGCCTAATAGTACTGGTCGTTATAATTGCCAGTAGATTGATAAATACTACTACTAATGATAATAATAATACATTTTTGTACAGTACATATGCATTAATTCATGTATTATTATTATTATTATTAAAGACGTTAATTATAAGTGCTACTATCACTATTACTACTATCATTAT] consensusID : consensus_5078#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 450 fasta sequence [CCCAAGAAATTAGCTCTCATTCACATTGTCTTTGCTAAAACAAACAGGACAGTCAAGGCAAACGCAACTGACCTACAACAACCACCTCTCAGTTGGCAGCTGTAAAATGCATTGTCATTTGTGTGTATCTTTCAGGTTGCTTATTTTTTCTTTCAATTTGCATTTCTGAATACGATGTGTTTTTATTTACTTCTCTCCTTATGTGCCAACCACTACTACTTTCTTCTTTTTGTCTAATGGGAGGACCATTATAGTCTTCTTTCATTGTAATGCTTTATCAAATAATCGTAGCAATAAGAACTATTATCATTATTATCTGCTTTCGTCTTAACTTCTTTGTTTCCTATGGGCTGTGTTTTAATAATCAACGTTGCCTAATAGTACTGGTCGTTATAATTGCCAGTAGATTGATAAATACTACTACTAATGATAATAATAATACATTTTTGT] [+] EMBL CD114686 [CCCAAGAAATTAGCTCTCATTCACATTGTCTTTGCTAAAACAAACAGGACAGTCAAGGCAAACGCAACTGACCTACAACAACCACCTCTCAGTTGGCAGCTGTAAAATGCATTGTCATTTGTGTGTATCTTTCAGGTTGCTTATTTTTTCTTTCAATTTGCATTTCTGAATACGATGTGTTTTTATTTACTTCTCTCCTTATGTGCCAACCACTACTACTTTCTTCTTTTTGTCTAATGGGAGGACCATTATAGTCTTCTTTCATTGTAATGCTTTATCAAATAATCGTAGCAATAAGAACTATTATCATTATTATCTGCTTTCGTCTTAACTTCTTTGTTTCCTATGGGCTGTGTTTTAATAATCAACGTTGCCTAATAGTACTGGTCGTTATAATTGCCAGTAGATTGATAAATACTAC ] [-] EMBL CD114802 [ CCAAGAAATTAGCTCTCATTCACATTGTCTTTGCTAAAACAAACAAGACAGTCAAGGCAAACGCAACTGACCTACAACAACCACCTCTCAGTTGGCAGCTGTAAAATGCATTGTCATTTGTGTGTATCTTTCAGGTTGCTTATTTTTTCTTTCAATTTGCATTTCTGAATACGATGTGTTTTTATTTACTTCTCTCCTTATGTGCCAACCACTACTACTTTCTTCTTTTTGTCTAATGGGAGGACCATTATAGTCTTCTTTCATTGTAATGCTTTATCAAATAATCGTAGCAATAAGAACTATTATCATTATTATCTGCTTTCGTCTTAACTTCTTTGTTTCCTATGGGCTGTGTTTTAATAATCAACGTTGCCTAATAGTACTGGTCGTTATAATTGCCAGTAGATTGATAAATACTACTACTAATGATAATAATAATACATTTTTGT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5078#0 ----------------GAATTCGGACGAGGT--GCTAAAACAAACAAGACAGTCA-GGCA 41 consensus_5078#1 CCCAAGAAATTAGCTCTCATTCACATTGTCTTTGCTAAAACAAACAGGACAGTCAAGGCA 60 **** * * ************* ******** **** consensus_5078#0 AACACAACTGACCTACAACAACCACCTCTCAGTTGGCAGCTGTAAAATGCATTGTCATTT 101 consensus_5078#1 AACGCAACTGACCTACAACAACCACCTCTCAGTTGGCAGCTGTAAAATGCATTGTCATTT 120 *** ******************************************************** consensus_5078#0 GTGTGTATCTTTCAGGTTGCTTATTTTTTCTTTCAATTTGCATTTCTGAATACGATGTGT 161 consensus_5078#1 GTGTGTATCTTTCAGGTTGCTTATTTTTTCTTTCAATTTGCATTTCTGAATACGATGTGT 180 ************************************************************ consensus_5078#0 TTTTATTTACTTCTCTCCTTATGTGCCAACCACTACTACTTTCTTCTTTTTGTCTAATGG 221 consensus_5078#1 TTTTATTTACTTCTCTCCTTATGTGCCAACCACTACTACTTTCTTCTTTTTGTCTAATGG 240 ************************************************************ consensus_5078#0 GAGGACCATTATAGTCTTCTTCTTTCATTGTAATGCTTTATCAAATAATCGTAGCAATAA 281 consensus_5078#1 GAGGACCATTATAGTCTTCTT---TCATTGTAATGCTTTATCAAATAATCGTAGCAATAA 297 ********************* ************************************ consensus_5078#0 GAACTATTATCATTATTATCTGCTTTCGTCTTAACTTCTTTGTTTCCTATGGGCTGTGTT 341 consensus_5078#1 GAACTATTATCATTATTATCTGCTTTCGTCTTAACTTCTTTGTTTCCTATGGGCTGTGTT 357 ************************************************************ consensus_5078#0 TTAATAATCAACGTTGCCTAATAGTACTGGTCGTTATAATTGCCAGTAGATTGATAAATA 401 consensus_5078#1 TTAATAATCAACGTTGCCTAATAGTACTGGTCGTTATAATTGCCAGTAGATTGATAAATA 417 ************************************************************ consensus_5078#0 CTACTACTAATGATAATAATAATACATTTTTGTACAGTACATATGCATTAATTCATGTAT 461 consensus_5078#1 CTACTACTAATGATAATAATAATACATTTTTGT--------------------------- 450 ********************************* consensus_5078#0 TATTATTATTATTATTAAAGACGTTAATTATAAGTGCTACTATCACTATTACTACTATCA 521 consensus_5078#1 ------------------------------------------------------------ consensus_5078#0 TTAT 525 consensus_5078#1 ---- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||