These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5081#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 431 fasta sequence [GTGTGGAGATTTAGTATTTTCATAGTTGAAAGCGTAAGTCAATTGAATATACTGAATAAGAGAAAAAGAAAAAAAATA-GGGGAAATAAAATTTAAAATAAGATATGTTATTCACAAATAAACACAACCCATACCCATATTAAAGTAAATCGTTAAAATAAGGCACTTTTATCAAATAAATATTACGTAATAGTATATGATTAATCGTTTAGATTAATAAAACAACGTTGTTACACAAACCCATTATATCTTAATCAGAAGGGAGAGAAGTAGAGTTGAAAAAAAAACAGAACAGTTACAGTGTACACAGGATTCTTTGCGCATCATCATGAAATCGATTGGGTATTGAACTCACAAACAGACAGACGCATAAACATGAACAGAAACTATCCTTTATTTTTTTGAGAGACTATTTACAACTAGCCAGTAAGA] [-] EMBL CD167852 [GTGTGGAGATTTAGTATTTTCATAGTTGAAAGCGTAAGTCAATTGAATATACTGAATAAGAGAAAAAGAAAAAAAATA GGGGAAATAAAATTTAAAATAAGATATGTTATTCACAAATAAACACAACCCATACCCATATTAAAGTAAATCGTTAAAATAAGGCACTTTTATCAAATAAATATTACGTAATAGTATATGATTAATCGTTTAGATTAATAAAACAACGTTGTTACACAAACCCATTATATCTTAATCAGAAGGGAGAGAAGTAGAGTTGAAAAAAAAACAGAACAGTTACAGTGTACACAGGATTCTTTGCGCATCATCATG ] [+] EMBL CD075325 [ caaGAATATACTGAATAAGAGAAAAAGAAAAAAAATATGGGGAAATAAAATTTAAA ATATGTTATTCACAAATAAACACAACCCATACCCATATTAAAGTAAATCGTTAAAATAAGGCACTTTTATCAAATAAATATTACGTAATAGTATATGATTAATCGTTTAGATTAATAAAACAACGTTGTTACACAAACCCATTATATCTTAATCAGAAGGGAGAGAAGTAGAGTTGAAAAAAAAACAGAACAGTTACAGTGTACACAGGATTCTTTGCGCATCATCATGAAATCGATTGGGTATTGAACTCACAAACAGACAGACGCATAAACATGAACAGAAACTATCCTTTATTTTTTTGAGAGACTATTTACAACTAGCCAGTAAGA] consensusID : consensus_5081#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 358 fasta sequence [GATTTCTGATAGAGAAAAGAAAAAANTATGGAAATAAATTTAAATAGTTATCACAAATAACCACCCCATACCCATATAAGTAAATCGTAAAATAAGCACTTTATCAAATAAATATACGTATAGGATATGATAATCGTTAGATTATAAAACAACGTTGTACACAAACCCATTATATCTTATCAGAAGGGAGAGAAGTAGAGTTGAAAAAANAACAGAACAGTACCAGTGTACACAGGATTCTTTGCGCATCATCATGAAATCGATTGGGTATTGAACTCACAAACAGACAGACGCATAAACATGAACAGAAACTATCCTTTATTTTTTTGAGAGACTATTTACAACTAGCCAGTAAGAA] [-] EMBL CD081502 [GATTTCTGATAGAGAAAAGAAAAAANTATGGAAATAAATTTAAATAGTTATCACAAATAACCACCCCATACCCATATAAGTAAATCGTAAAATAAGCACTTTATCAAATAAATATACGTATAGGATATGATAATCGTTAGATTATAAAACAACGTTGTACACAAACCCATTATATCTTATCAGAAGGGAGAGAAGTAGAGTTGAAAAAANAACAGAACAGTACCAGTGTACACAGGATTCTTTGCGCATCATCATGAAATCGATTGGGTATTGAACTCACAAACAGACAGACGCATAAACATGAACAGAAACTATCCTTTATTTTTTTGAGAGACTATTTACAACTAGCCAGTAAGAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5081#0 GTGTGGAGATTTAGTATTTTCATAGTTGAAAGCGTAAGTCAATTGAATATACTGAATAAG 60 consensus_5081#1 --------------------------------------------------GATTTCTGAT 10 * * * consensus_5081#0 AGAAAAAGAAAAAAAATAGGGGAAATAAAATTTAAAATAAGATATGTTATTCACAAATAA 120 consensus_5081#1 AGAGAAAAGAAAAAANTATGG-AAATAAA--TTTAAATA------GTTAT-CACAAATAA 60 *** *** ****** ** ** ******* ** ***** ***** ********* consensus_5081#0 ACACAACCCATACCCATATTAAAGTAAATCGTTAAAATAAGGCACTTTTATCAAATAAAT 180 consensus_5081#1 CCAC--CCCATACCCATAT--AAGTAAATCGT-AAAATAAG-CACTTT-ATCAAATAAAT 113 *** ************* *********** ******** ****** *********** consensus_5081#0 ATTACGTAATAGTATATGATTAATCGTTTAGATTAATAAAACAACGTTGTTACACAAACC 240 consensus_5081#1 AT-ACGTA-TAGGATATGAT-AATCGTT-AGATTA-TAAAACAACGTTGT-ACACAAACC 167 ** ***** *** ******* ******* ****** ************** ********* consensus_5081#0 CATTATATCTTAATCAGAAGGGAGAGAAGTAGAGTTGAAAAAAAAACAGAACAGTTACAG 300 consensus_5081#1 CATTATATCTTA-TCAGAAGGGAGAGAAGTAGAGTTGAAAAAANAACAGAACAGTACCAG 226 ************ ****************************** *********** *** consensus_5081#0 TGTACACAGGATTCTTTGCGCATCATCATGAAATCGATTGGGTATTGAACTCACAAACAG 360 consensus_5081#1 TGTACACAGGATTCTTTGCGCATCATCATGAAATCGATTGGGTATTGAACTCACAAACAG 286 ************************************************************ consensus_5081#0 ACAGACGCATAAACATGAACAGAAACTATCCTTTATTTTTTTGAGAGACTATTTACAACT 420 consensus_5081#1 ACAGACGCATAAACATGAACAGAAACTATCCTTTATTTTTTTGAGAGACTATTTACAACT 346 ************************************************************ consensus_5081#0 AGCCAGTAAGA- 431 consensus_5081#1 AGCCAGTAAGAA 358 *********** |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||