cluster # 5085

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Schistosoma mansoni
cluster # 5085 cluster # 5085 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5085#0 length = 587 sequences # 2

consensus_5085#1 length = 451 sequences # 1

consensusID : consensus_5085#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 587
fasta sequence

                              [GTGCTGATCGACAACGGCCAAGAAGAATAGCCATCAGTTCTAAGTATGGTCGAGCTAGAAGTAAGGCAGCAGTTGAAGCAACATTTTCTGTTGAGCGTATATGCCGTAAAATTGCACTGTGTGATGCATTACACCGTTTAATCAACCAATGACGTAAAACAGACGGCATGGTTATTCCTACATCCCCTGTTCCATATACCACATCATGATCCAAATCCACAAGTCGAACTCCAGGAATTAACAGTGGTTTCATCTTCTCTTTTAAACATGAGTGGACACCAGCAACAAATGGGGTCGGACAGCCAACATATTCAATACAATTGGAAGGTAACAGAGAATAAATTAAATGAGGCCATATAAGTGGGTACAACAAACTTAAACTGGCCAAAAGACATGAAGTAATACGCTGTAAACGACTTGAGTAGAATATTACACTTTTCTCCAAAATTAGGCTTTCAAATATTACAATCCAATTGCCGATAGACAATGTATTATAATACTCTANAATATGTCTATG-AAAACANACTGAAACTGAGCTTCCGGGAGTTGTATACTTAACTTCGTCGAATTTGGAGGTGATGAAATGT]

[+] EMBL CD159009             [GTGCTGATCGACAACGGCCAAGAAGAATAGCCATCAGTTCTAAGTATGGTCGAGCTAGAAGTAAGGCAGCAGTTGAAGCAACATTTTCTGTTGAGCGTATATGCCGTAAAATTGCACTGTGTGATGCATTACACCGTTTAATCAACCAATGACGTAAAACAGACGGCATGGTTATTCCTACATCCCCTGTTCCATATACCACATCATGATCCAAATCCACAAGTCGAACTCCAGGAATTAACAGTGGTTTCATCTTCTCTTTTAAACATGAGTGGACACCAGCAACAAATGGGGTCGGACAGCCAACATATTCAATACAATTGGAAGGTAACAGAGAATAAATTAAATGAGGCCATATAAGTGGGTACAACAAACTTAAACTGGCCAAAAGACATGAAGTAATACGCTGTAAACGACTTGAGTAGAATATTACACTTTTCTCCAAAATTAGGCTTTCAAATATTACAATCCAATTGCCGATAGACAATGTATTATAATACTCTANAATATGTCTATG AAAACANACTGAAACTGAGCTTCCGGGAGTTGTATACTTAACTTCGTCGAATTTGGAGGTGATGAAATGT]
[+] EMBL CD192997             [                                                                                                                                                                                                            CATGATCCAAATCCACAAGTCGAACTCCAGGAATTAACAGTGGTTTCATCTTCTCTTTTAAACATGAGTGGACACCAGCAACAAATGGGGTCGGACAGCCAACATATTCAATACAATTGGAAGGTAACAGAGAATAAATTAAATGAGGCCATATAAGTGGGTACAACAAACTTAAACTGGCCAAAAGACATGAAGTAATACGCTGTAAACGACTTGAGTAGAATATTACACTTTTCTCCAAAATTAGGCTTTCAAATATTACAATCCAATTGCCGATAGACAATGTATTATAATACTCTAAAATATGTCTATGAAAAACAAACTGAAACTGA                                                    ]




>consensus_5085#0
GTGCTGATCGACAACGGCCAAGAAGAATAGCCATCAGTTCTAAGTATGGTCGAGCTAGAA
GTAAGGCAGCAGTTGAAGCAACATTTTCTGTTGAGCGTATATGCCGTAAAATTGCACTGT
GTGATGCATTACACCGTTTAATCAACCAATGACGTAAAACAGACGGCATGGTTATTCCTA
CATCCCCTGTTCCATATACCACATCATGATCCAAATCCACAAGTCGAACTCCAGGAATTA
ACAGTGGTTTCATCTTCTCTTTTAAACATGAGTGGACACCAGCAACAAATGGGGTCGGAC
AGCCAACATATTCAATACAATTGGAAGGTAACAGAGAATAAATTAAATGAGGCCATATAA
GTGGGTACAACAAACTTAAACTGGCCAAAAGACATGAAGTAATACGCTGTAAACGACTTG
AGTAGAATATTACACTTTTCTCCAAAATTAGGCTTTCAAATATTACAATCCAATTGCCGA
TAGACAATGTATTATAATACTCTANAATATGTCTATGAAAACANACTGAAACTGAGCTTC
CGGGAGTTGTATACTTAACTTCGTCGAATTTGGAGGTGATGAAATGT

consensusID : consensus_5085#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 451
fasta sequence

                              [CATTTGGTGATTGTATTGGTAAAAGATCGACAGATGTAGAAACTTCATTATGTTGCAGTGCTGATCGATAACGGCCAAGAAGAATAGCCATCAGTTCTAAGTATGGTCGAGCTAGAAGTAAGGCAGCAGTTGAAGCAACATTTTCTGTTGAGCGTATATGCCGTAAAATTGCACTGTGTGATGCATTACACCGTTTAATCAACCAATGACGTAAAACAGACGGCATGGTTATTCCTACATCCCCTGTTCCATATACCACATCATGATCCAAATCCACAAGTCGAACTCCAGGAATTAACAGTGGTTTCATCTTCTATACAAATAAAAAGCAGAACTTTAAAAAAAATTAAAGACTTACATTGAAACCATGAGCCCATCAATGTTAGACCACAATTAGAAACCTGGAAGTACTGGACGGCCGTTTTTTTTCTAGTGTGGGGCTCCTCAGCAG]

[-] EMBL CD060597             [CATTTGGTGATTGTATTGGTAAAAGATCGACAGATGTAGAAACTTCATTATGTTGCAGTGCTGATCGATAACGGCCAAGAAGAATAGCCATCAGTTCTAAGTATGGTCGAGCTAGAAGTAAGGCAGCAGTTGAAGCAACATTTTCTGTTGAGCGTATATGCCGTAAAATTGCACTGTGTGATGCATTACACCGTTTAATCAACCAATGACGTAAAACAGACGGCATGGTTATTCCTACATCCCCTGTTCCATATACCACATCATGATCCAAATCCACAAGTCGAACTCCAGGAATTAACAGTGGTTTCATCTTCTATACAAATAAAAAGCAGAACTTTAAAAAAAATTAAAGACTTACATTGAAACCATGAGCCCATCAATGTTAGACCACAATTAGAAACCTGGAAGTACTGGACGGCCGTTTTTTTTCTAGTGTGGGGCTCCTCAGCAG]




>consensus_5085#1
CATTTGGTGATTGTATTGGTAAAAGATCGACAGATGTAGAAACTTCATTATGTTGCAGTG
CTGATCGATAACGGCCAAGAAGAATAGCCATCAGTTCTAAGTATGGTCGAGCTAGAAGTA
AGGCAGCAGTTGAAGCAACATTTTCTGTTGAGCGTATATGCCGTAAAATTGCACTGTGTG
ATGCATTACACCGTTTAATCAACCAATGACGTAAAACAGACGGCATGGTTATTCCTACAT
CCCCTGTTCCATATACCACATCATGATCCAAATCCACAAGTCGAACTCCAGGAATTAACA
GTGGTTTCATCTTCTATACAAATAAAAAGCAGAACTTTAAAAAAAATTAAAGACTTACAT
TGAAACCATGAGCCCATCAATGTTAGACCACAATTAGAAACCTGGAAGTACTGGACGGCC
GTTTTTTTTCTAGTGTGGGGCTCCTCAGCAG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5085#0      ---------------------------------------------------------GTG 3
consensus_5085#1      CATTTGGTGATTGTATTGGTAAAAGATCGACAGATGTAGAAACTTCATTATGTTGCAGTG 60
                                                                               ***

consensus_5085#0      CTGATCGACAACGGCCAAGAAGAATAGCCATCAGTTCTAAGTATGGTCGAGCTAGAAGTA 63
consensus_5085#1      CTGATCGATAACGGCCAAGAAGAATAGCCATCAGTTCTAAGTATGGTCGAGCTAGAAGTA 120
                      ******** ***************************************************

consensus_5085#0      AGGCAGCAGTTGAAGCAACATTTTCTGTTGAGCGTATATGCCGTAAAATTGCACTGTGTG 123
consensus_5085#1      AGGCAGCAGTTGAAGCAACATTTTCTGTTGAGCGTATATGCCGTAAAATTGCACTGTGTG 180
                      ************************************************************

consensus_5085#0      ATGCATTACACCGTTTAATCAACCAATGACGTAAAACAGACGGCATGGTTATTCCTACAT 183
consensus_5085#1      ATGCATTACACCGTTTAATCAACCAATGACGTAAAACAGACGGCATGGTTATTCCTACAT 240
                      ************************************************************

consensus_5085#0      CCCCTGTTCCATATACCACATCATGATCCAAATCCACAAGTCGAACTCCAGGAATTAACA 243
consensus_5085#1      CCCCTGTTCCATATACCACATCATGATCCAAATCCACAAGTCGAACTCCAGGAATTAACA 300
                      ************************************************************

consensus_5085#0      GTGGTTTCATCTTCTCTTTTAAACATGAGTGGA-CACCAGCAACAAATGGGGTCGGACAG 302
consensus_5085#1      GTGGTTTCATCTTCTATACAAATAAAAAGCAGAACTTTAAAAAAAATTAAAGACTTACAT 360
                      *************** *   **  *  **  ** *   *  ** ** *   * *  *** 

consensus_5085#0      CCAACATATTCAAT-ACAATTGGAAGGTAACAGAGAATAAATTAAATGAGGCC-ATATAA 360
consensus_5085#1      TGAAACCATGAGCCCATCAATGTTAGACCACAATTAGAAACCTGGAAGTACTGGACGGCC 420
                        **   **      *  * **  **   ***   *  **  *  * *      *     

consensus_5085#0      GTGGGTACAACAAACTTAAACTGGCCAAAAGACATGAAGTAATACGCTGTAAACGACTTG 420
consensus_5085#1      GTTTTTTTTCTAGTGTGGGGCTCCTCAGCAG----------------------------- 451
                      **   *     *   *    **   **  **                             

consensus_5085#0      AGTAGAATATTACACTTTTCTCCAAAATTAGGCTTTCAAATATTACAATCCAATTGCCGA 480
consensus_5085#1      ------------------------------------------------------------
                                                                                  

consensus_5085#0      TAGACAATGTATTATAATACTCTANAATATGTCTATGAAAACANACTGAAACTGAGCTTC 540
consensus_5085#1      ------------------------------------------------------------
                                                                                  

consensus_5085#0      CGGGAGTTGTATACTTAACTTCGTCGAATTTGGAGGTGATGAAATGT 587
consensus_5085#1      -----------------------------------------------