These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5086#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 892 fasta sequence [CGAGGCGGCACGAGGTGGATAAGGAAGTTAAATTGAATTAAGAAGAGCTTGTTTCCGAGCTTACAACAGGAAAAGTTATATGTGGAGGCATCGGTGCAGCACTGCGTTATCGAAGATTTTCACCCCTGGCAGAAAGTGGAAGTGCAGCTAGTTCAGCTTTGGACAATAGTTATATATGCAAATTAAAAACAGGAAATCTAAATCAAAATGAACCTACTGGCCAACAGACCAACAATATCACAGCAGTTTTGGATCATGAAACAATTTCGAACGAGGAATTTTATTTACGTAAGGAATGTGATATCGTTTTGAAAGAACTCGCCGAGTGGAGAAAACTACACTCAGAACCAAAACTACTTAACTCATGTAAAAGTATAAAGAGAAGAAAGAACAAAGTTACAAAAGCAGATTTGGAATGTCCCTCAGTCATTTTATCACCTAACAGTGATGAAAATACATTAGATAATCATAGAGATGTAAAAGAGGAGTGCACTGAAGATGTGGTCACATCAAATAAATCATTAGAAAATTGTAACCAAAAACCATATACAACGCATAAAAAGAAGCTTGCGAATTCGAATCAAAATCAAAATCATAAAAATCCTGCACCGTTTAAAATGTCAAATGAAATCGANCAAAGTCAAATTAAAATTAAACAAAGCGGGTGTTGGTAAAAGCTCAATTNAATATCGATCAGTATCTGGAGTCTGGTCTTCATCAGATTCATCACTGCCAATTAATTATNGATCGATCACACGAATACATCATCTGTTTTTTCAATTCATNNCAATGNTCTTCCCATAGACAAGNTAANGAATCATCATCCATGGTGATGGGNATAGNTGATGGGNATATGGTGATATAAGGCATATCATCATCATTAGTTAATAAT] [+] EMBL CD082186 [CGAGGCGGCACGAGGTGGATAAGGAAGTTAAATTGAATTAAGAAGAGCTTGTTTCCGAGCTTACAACAGGAAAAGTTATATGTGGAGGCATCGGTGCAGCACTGCGTTATCGAAGATTTTCACCCCTGGCAGAAAGTGGAAGTGCAGCTAGTTCAGCTTTGGACAATAGTTATATATGCAAATTAAAAACAGGAAATCTAAATCAAAATGAACCTACTGGCCAACAGACCAACAATATCACAGCAGTTTTGGATCATGAAACAATTTCGAACGAGGAATTTTATTTACGTAAGGAATGTGATATCGTTTTGAAAGAACTCGCCGAGTGGAGAAAACTACACTCAGAACCAAAACTACTTAACTCATGTAAAAGTATAAAGAGAAGAAAGAACAAAGTTACAAAAGCAGATTTGGAATGTCCCTCAGTCATTTTATCACCTAACAGTGATGAAAATACATTAGATAATCATAGAGATGTAAAAGAGGAGTGCACTGAAGATGTGGTCACATCAAATAAATCATTAGAAAATTGTAACCAAAAACCATATACAACGCATAAAAAGAAGCTTGCGAATTCGAATCAAAATCAAAATCATAAAAATCCTGCACCGTTTAAAATGTCAAATGAAATCGANCAAAGTCAAATTAAAATTAAACAAAGCGGGTGTTGGTAAAAGCTCAATTNAATATCGATCAGTATCTGGAGTCTGGTCTTCATCAGATTCATCACTGCCAATTAATTATNGATCGATCACACGAATACATCATCTGTTTTTTCAATTCATNNCAATGNTCTTCCCATAGACAAGNTAANGAATCATCATCCATGGTGATGGGNATAGNTGATGGGNATATGGTGATATAAGGCATATCATCATCATTAGTTAATAAT] consensusID : consensus_5086#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 575 fasta sequence [ACTCAGAACCAAAACTTACTTAACTCATGTAAAAGTATAAAGAGAAGAAAGANCAAAGTTCCAAAAGCAGATTTGGAATGTCCCTCAGTCATTTTATCACCTAACAGTGATGAAAATACATTAGATAATCATAGAGATGTAAAAGAGGAGTGCACTGAAGATGTGGTCACATCAAATAAATCATTAGAAAATTGTAACCAAAACACCATATACAACGCATAAAAAGAAGCTTGCGAATTCGAATCAAAATCAAAATCATAAAAATCCTGCCCCGTTTAAAATGTCAAATGAAATCGACAAAAGTCAAATTAAAATTAAACAAGCGGGTGTTGGTAAAAGCTCAATTAATAATCGATCAGTATCTGAAGTCTGTTTTTCATCAGATTCATCACTGCCAATTAATTATGATTCGATCAACACGAATACATCATCTGTTTTTTCAATTTCATCAAATTGTTCTTCCAATAGACAAAAGTTAAAGAATTCATCATCACATGTTGAATGGTAATAGTTGTATGGTATTATTGTTGATTATAATGCATTATTCTATTCATCTATTAAGTTTTAATAAATAA] [-] EMBL CD075800 [ACTCAGAACCAAAACTTACTTAACTCATGTAAAAGTATAAAGAGAAGAAAGANCAAAGTTCCAAAAGCAGATTTGGAATGTCCCTCAGTCATTTTATCACCTAACAGTGATGAAAATACATTAGATAATCATAGAGATGTAAAAGAGGAGTGCACTGAAGATGTGGTCACATCAAATAAATCATTAGAAAATTGTAACCAAAACACCATATACAACGCATAAAAAGAAGCTTGCGAATTCGAATCAAAATCAAAATCATAAAAATCCTGCCCCGTTTAAAATGTCAAATGAAATCGACAAAAGTCAAATTAAAATTAAACAAGCGGGTGTTGGTAAAAGCTCAATTAATAATCGATCAGTATCTGAAGTCTGTTTTTCATCAGATTCATCACTGCCAATTAATTATGATTCGATCAACACGAATACATCATCTGTTTTTTCAATTTCATCAAATTGTTCTTCCAATAGACAAAAGTTAAAGAATTCATCATCACATGTTGAATGGTAATAGTTGTATGGTATTATTGTTGATTATAATGCATTATTCTATTCATCTATTAAGTTTTAATAAATAA] consensusID : consensus_5086#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 352 fasta sequence [AACAGAAGTATCAGAAAAGCATTATACAGTTTACTGAACCTAAGGATGGTTACAACATTCTGAAGCTTTCTAGAAGTTCATCAGTAGTGATGGATAAGGAAGTTAAATTGAATGAAGAAGAGCTTGTTTCTGAGCTTACAACAGGAAAAGTTATATGTGGAGGCATCGGTGCAGCACTGCGTTATCGAAGATTTTCACCCCTGGCAGAAAGTGGAAGTGCAGCTAGTTCAGCTTTGGACAATAGTTATATATGCAAATTAAAAACAGGAAATCTAAATCAAAATGAACCTACTGGCCAACAGACCAACAATATCACAGCAGTTTTGGATCATGAAACAATTTCGAACGAGGA] [+] EMBL CD188028 [AACAGAAGTATCAGAAAAGCATTATACAGTTTACTGAACCTAAGGATGGTTACAACATTCTGAAGCTTTCTAGAAGTTCATCAGTAGTGATGGATAAGGAAGTTAAATTGAATGAAGAAGAGCTTGTTTCTGAGCTTACAACAGGAAAAGTTATATGTGGAGGCATCGGTGCAGCACTGCGTTATCGAAGATTTTCACCCCTGGCAGAAAGTGGAAGTGCAGCTAGTTCAGCTTTGGACAATAGTTATATATGCAAATTAAAAACAGGAAATCTAAATCAAAATGAACCTACTGGCCAACAGACCAACAATATCACAGCAGTTTTGGATCATGAAACAATTTCGAACGAGGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5086#0 CGAGGCGGCACGAGGTGGATAAGGAAGTTAAATTGAATTAAGAAGAGCTTGTTTCCGAGC 60 consensus_5086#1 ------------------------------------------------------------ consensus_5086#2 ------------------------------------------------------------ consensus_5086#0 TTACAACAGGAAAAGTTATATGTGGAGGCATCGGTGCAGCACTGCGTTATCGAAGATTTT 120 consensus_5086#1 ------------------------------------------------------------ consensus_5086#2 ------------------------------------------------------------ consensus_5086#0 CACCCCTGGCAGAAAGTGGAAGTGCAGCTAGTTCAGCTTTGGACAATAGTTATATATGCA 180 consensus_5086#1 ------------------------------------------------------------ consensus_5086#2 ------------------------------------------------------------ consensus_5086#0 AATTAAAAACAGGAAATCTAAATCAAAATGAACCTACTGGCCAACAGACCAACAATATCA 240 consensus_5086#1 ------------------------------------------------------------ consensus_5086#2 ------------------------------------------------------------ consensus_5086#0 CAGCAGTTTTGGATCATGAAACAATTTCGAACGAGGAATTTTATTTACGTAAGGAATGTG 300 consensus_5086#1 ------------------------------------------------------------ consensus_5086#2 ------------------------------------------------------------ consensus_5086#0 ATATCGTTTTGAAAGAACTCGCCGAGTGGAGAAAACTACACTCAGAACCAAAACT-ACTT 359 consensus_5086#1 ---------------------------------------ACTCAGAACCAAAACTTACTT 21 consensus_5086#2 ------------------------------------------------------------ consensus_5086#0 AACTCATGTAAAAGTATAAAGAGAAGAAAGAACAAAGTTACAAAAGCAGATTTGGAATGT 419 consensus_5086#1 AACTCATGTAAAAGTATAAAGAGAAGAAAGANCAAAGTTCCAAAAGCAGATTTGGAATGT 81 consensus_5086#2 AACAGAAGTATCAG-AAAAGCATTATACAGTTTACTGAACCTAAGG-ATGGTTACAACAT 58 *** * *** ** * ** * * * ** * * * ** * * ** ** * consensus_5086#0 CCCTCAGTCATTTTATCACCTAACAGTGATGAAAATACATTAGATAATCATAGAGATGTA 479 consensus_5086#1 CCCTCAGTCATTTTATCACCTAACAGTGATGAAAATACATTAGATAATCATAGAGATGTA 141 consensus_5086#2 TCTGAAGCTTTCTAGAAGTTCATCAGTAGTGA---TGGATAAGGAAGTTA----AATTGA 111 * ** * * * **** *** * ** ** * * * ** * consensus_5086#0 AAAGAGGAGTGCACTGAAGATGTGGTCACATCAAATAAATCATTAGAAAATTGTAACCAA 539 consensus_5086#1 AAAGAGGAGTGCACTGAAGATGTGGTCACATCAAATAAATCATTAGAAAATTGTAACCAA 201 consensus_5086#2 ATGAAGAAGAGC-TTGTTTCTGAGCTTACAACAGGAAAA--GTTATA----TGTGGAGGC 164 * ** ** ** ** ** * * *** ** *** *** * *** consensus_5086#0 AA-ACCATATACAACGCATAAAAAGAAGCTTGCGAATTCGAATCAAAATCAAAATCATAA 598 consensus_5086#1 AACACCATATACAACGCATAAAAAGAAGCTTGCGAATTCGAATCAAAATCAAAATCATAA 261 consensus_5086#2 ATCGGTGCA-GCACTGCGTTATCGAAGATTTTCACCCCTGGCAGAAAGTGGAAGTGCAGC 223 * * ** ** * * * ** * * *** * ** * consensus_5086#0 AAATCCTGCACCGTTTAA-AATGTCAAATGAAATCGANCAAAGTCAAATTAAAATTAAAC 657 consensus_5086#1 AAATCCTGCCCCGTTTAA-AATGTCAAATGAAATCGACAAAAGTCAAATTAAAATTAAAC 320 consensus_5086#2 TAGTTCAGCTTTGGACAATAGTTATATATGCAAATTAAAAACAGGAAATCTAAATCAAA- 282 * * * ** * ** * * * *** ** * ** **** **** *** consensus_5086#0 AAAGCGGGTGTTGGTAAAAGCTCAATTNAATATCGATCAGTATCTGGAGTCTGGTCTTCA 717 consensus_5086#1 AA-GCGGGTGTTGGTAAAAGCTCAATTAATAATCGATCAGTATCTGAAGTCTGTTTTTCA 379 consensus_5086#2 -ATGAACCTACTGGCCAACAGACCAACAATATCACAGCAGT-TTTGGATCATGAAACAAT 340 * * * *** ** * * * * **** * ** * ** consensus_5086#0 TCAGATTCATCACTGCCAATTAATTATNGATCGATCA-CACGAATACATCATCTGTTTTT 776 consensus_5086#1 TCAGATTCATCACTGCCAATTAATTATGATTCGATCAACACGAATACATCATCTGTTTTT 439 consensus_5086#2 TTCGAACGAGGA------------------------------------------------ 352 * ** * * consensus_5086#0 TCAATT-CATNNCAATGNTCTTCCCATAGACAA--GNTAANGAAT-CATCATC-CATGGT 831 consensus_5086#1 TCAATTTCATCAAATTGTTCTTCCAATAGACAAAAGTTAAAGAATTCATCATCACATGTT 499 consensus_5086#2 ------------------------------------------------------------ consensus_5086#0 GA-TGGGNATAGNTG-ATGGGNATATGGTGATATAAGGCATATCATCATCATTAGTTAAT 889 consensus_5086#1 GAATGGTAATAGTTGTATGGTATTATTGTTGATTATAATGCATTATTCTATTCATCTATT 559 consensus_5086#2 ------------------------------------------------------------ consensus_5086#0 AAT------------- 892 consensus_5086#1 AAGTTTTAATAAATAA 575 consensus_5086#2 ---------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||