cluster # 5091

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Schistosoma mansoni
cluster # 5091 cluster # 5091 Sequences # 3 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5091#0 length = 695 sequences # 1

consensus_5091#1 length = 283 sequences # 1
consensus_5091#2 length = 273 sequences # 1

consensusID : consensus_5091#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 695
fasta sequence

                              [NATCTTGGCACGAGGAACGTCGTTAAAACGAAACGGTGGGCGGCTTTGTAAGGCTCTGACATTTTTACCGTGTCCACGCCGTTTTTACCACGAGGTAACACTAAGATCACACAGCCAAGTTATTTCTACTGAAAGCTATCAAGAGCTCCAAAGTGTTTTACTTTTCAATGAATTCTACTCATCCCCTCCATTCATCATACTCAAATTTGTTGTTCAGACAGTGGCAAACTGCAAACTATAAGGTCAGTGCCGAGAATCTTGTGTATCCAATTTTCCTCAGCCAAGACCCAGATTGTGATAAAATAATTACTAGCCTAATAGACCAACGTCGAATAGGATGCAACCGAATCATCGAGTTCTTAACACCTTTGGTGGCCAAGCAACTAAAATCTGTATTGTTGTTTGGGACAATCAGTAAAGACCAAAAAGATGCTACAGGATCAGCTTGTGATACACCAAATTCACCAGTCATTCAGGCAATCAAGTTGCTGAAGTCAAAATTTCCGGATTTAATAGTGATTTGTGATGTTTGTTTGTGTGCATACACTGACAGTGGTCATTGTGGTATTTTACGTGATGACGGCTGCCTTGACGTACCTAGAACTCTTGAACGTTTAGCGGAAATATCTAAACGATTTGCCCTAGAAGGAGCTGATGTTATTGCCCCTTCTGACATGATGGATGGACGTGTGAAA]

[+] EMBL CD080723             [NATCTTGGCACGAGGAACGTCGTTAAAACGAAACGGTGGGCGGCTTTGTAAGGCTCTGACATTTTTACCGTGTCCACGCCGTTTTTACCACGAGGTAACACTAAGATCACACAGCCAAGTTATTTCTACTGAAAGCTATCAAGAGCTCCAAAGTGTTTTACTTTTCAATGAATTCTACTCATCCCCTCCATTCATCATACTCAAATTTGTTGTTCAGACAGTGGCAAACTGCAAACTATAAGGTCAGTGCCGAGAATCTTGTGTATCCAATTTTCCTCAGCCAAGACCCAGATTGTGATAAAATAATTACTAGCCTAATAGACCAACGTCGAATAGGATGCAACCGAATCATCGAGTTCTTAACACCTTTGGTGGCCAAGCAACTAAAATCTGTATTGTTGTTTGGGACAATCAGTAAAGACCAAAAAGATGCTACAGGATCAGCTTGTGATACACCAAATTCACCAGTCATTCAGGCAATCAAGTTGCTGAAGTCAAAATTTCCGGATTTAATAGTGATTTGTGATGTTTGTTTGTGTGCATACACTGACAGTGGTCATTGTGGTATTTTACGTGATGACGGCTGCCTTGACGTACCTAGAACTCTTGAACGTTTAGCGGAAATATCTAAACGATTTGCCCTAGAAGGAGCTGATGTTATTGCCCCTTCTGACATGATGGATGGACGTGTGAAA]




>consensus_5091#0
NATCTTGGCACGAGGAACGTCGTTAAAACGAAACGGTGGGCGGCTTTGTAAGGCTCTGAC
ATTTTTACCGTGTCCACGCCGTTTTTACCACGAGGTAACACTAAGATCACACAGCCAAGT
TATTTCTACTGAAAGCTATCAAGAGCTCCAAAGTGTTTTACTTTTCAATGAATTCTACTC
ATCCCCTCCATTCATCATACTCAAATTTGTTGTTCAGACAGTGGCAAACTGCAAACTATA
AGGTCAGTGCCGAGAATCTTGTGTATCCAATTTTCCTCAGCCAAGACCCAGATTGTGATA
AAATAATTACTAGCCTAATAGACCAACGTCGAATAGGATGCAACCGAATCATCGAGTTCT
TAACACCTTTGGTGGCCAAGCAACTAAAATCTGTATTGTTGTTTGGGACAATCAGTAAAG
ACCAAAAAGATGCTACAGGATCAGCTTGTGATACACCAAATTCACCAGTCATTCAGGCAA
TCAAGTTGCTGAAGTCAAAATTTCCGGATTTAATAGTGATTTGTGATGTTTGTTTGTGTG
CATACACTGACAGTGGTCATTGTGGTATTTTACGTGATGACGGCTGCCTTGACGTACCTA
GAACTCTTGAACGTTTAGCGGAAATATCTAAACGATTTGCCCTAGAAGGAGCTGATGTTA
TTGCCCCTTCTGACATGATGGATGGACGTGTGAAA

consensusID : consensus_5091#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 283
fasta sequence

                              [CGGCACGAGGATCATACTCAAATTTGTTGTTCAGACAGTGGCAAACTGCAAACTATAAGGTCAGTGCCGAGAATCTTGTGTATCCAATTTTCCTCAGGTATATTATATTGTTTTCTCATTCATTTAGCCAAGACCCAGATTGTGATAAAATAATTACTAGCCTAATAGACCAACGTCGAATAGGATGCAACCGAATCATCGAGTTCTTAACACCTTTGGTGGCCAAGCAACTAAAATCTGTATTGTTGTTTGGGACAATCAGTAAAGACCAAAAAGATGCTAC]

[+] EMBL CD077952             [CGGCACGAGGATCATACTCAAATTTGTTGTTCAGACAGTGGCAAACTGCAAACTATAAGGTCAGTGCCGAGAATCTTGTGTATCCAATTTTCCTCAGGTATATTATATTGTTTTCTCATTCATTTAGCCAAGACCCAGATTGTGATAAAATAATTACTAGCCTAATAGACCAACGTCGAATAGGATGCAACCGAATCATCGAGTTCTTAACACCTTTGGTGGCCAAGCAACTAAAATCTGTATTGTTGTTTGGGACAATCAGTAAAGACCAAAAAGATGCTAC]




>consensus_5091#1
CGGCACGAGGATCATACTCAAATTTGTTGTTCAGACAGTGGCAAACTGCAAACTATAAGG
TCAGTGCCGAGAATCTTGTGTATCCAATTTTCCTCAGGTATATTATATTGTTTTCTCATT
CATTTAGCCAAGACCCAGATTGTGATAAAATAATTACTAGCCTAATAGACCAACGTCGAA
TAGGATGCAACCGAATCATCGAGTTCTTAACACCTTTGGTGGCCAAGCAACTAAAATCTG
TATTGTTGTTTGGGACAATCAGTAAAGACCAAAAAGATGCTAC

consensusID : consensus_5091#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 273
fasta sequence

                              [ACGAAACGGTGGGCGGCTTTGAAAGGCTCTGACATTTTTACCGTGTCCACGCCGTTTTTACCACGAGGTAACACTAAGATCACACAGCCAAGTTACTTCTACTGAAAGCTATCAAGAGCTCCAAAGTGTTTTACTTTTCAATGAATTCTACTCATCCCCTCCATTCATCATACTCAAATTTGTTGTTCAGACAGTGGCAAACTGCAAACTATAAGGTCAGTGCCGAGAATCTTGTGTATCCAATTTTCCTCAGGTATATTATATTGTTTTCTC]

[+] EMBL CD183334             [ACGAAACGGTGGGCGGCTTTGAAAGGCTCTGACATTTTTACCGTGTCCACGCCGTTTTTACCACGAGGTAACACTAAGATCACACAGCCAAGTTACTTCTACTGAAAGCTATCAAGAGCTCCAAAGTGTTTTACTTTTCAATGAATTCTACTCATCCCCTCCATTCATCATACTCAAATTTGTTGTTCAGACAGTGGCAAACTGCAAACTATAAGGTCAGTGCCGAGAATCTTGTGTATCCAATTTTCCTCAGGTATATTATATTGTTTTCTC]




>consensus_5091#2
ACGAAACGGTGGGCGGCTTTGAAAGGCTCTGACATTTTTACCGTGTCCACGCCGTTTTTA
CCACGAGGTAACACTAAGATCACACAGCCAAGTTACTTCTACTGAAAGCTATCAAGAGCT
CCAAAGTGTTTTACTTTTCAATGAATTCTACTCATCCCCTCCATTCATCATACTCAAATT
TGTTGTTCAGACAGTGGCAAACTGCAAACTATAAGGTCAGTGCCGAGAATCTTGTGTATC
CAATTTTCCTCAGGTATATTATATTGTTTTCTC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5091#0      NATCTTGGCACGAGGAACGTCGTTAAAACGAAACGGTGGGCGGCTTTGTAAGGCTCTGAC 60
consensus_5091#2      ---------------------------ACGAAACGGTGGGCGGCTTTGAAAGGCTCTGAC 33
consensus_5091#1      ----------------------------CGGCACGAGGATCATACTCAAA----TTTGTT 28
                                                  **  ***  *  *    *   *    * **  

consensus_5091#0      ATTTTTACCGTGTCCACGCCGTTTTTACCACGAGGTAACACTAAGATCA-CACAGCCAAG 119
consensus_5091#2      ATTTTTACCGTGTCCACGCCGTTTTTACCACGAGGTAACACTAAGATCA-CACAGCCAAG 92
consensus_5091#1      GTTCAGACAGTGGCAA----------ACTGCAAACTA----TAAGGTCAGTGCCGAGAAT 74
                       **   ** *** * *          **  * *  **    **** ***   * *  ** 

consensus_5091#0      TTATTTCTACTGAAAGCTATCAAGAGCTCCAAAGTGTTTTACTTTTCAATGAATTCTACT 179
consensus_5091#2      TTACTTCTACTGAAAGCTATCAAGAGCTCCAAAGTGTTTTACTTTTCAATGAATTCTACT 152
consensus_5091#1      CTTGTGTATCCAATTTTCCTCAGGTATATTATATTGTTTTCTCATTCATTTAGCCAAGAC 134
                       *  *    *  *      *** *      * * ******    **** * *        

consensus_5091#0      CATCCCCTCCATTCATCATACTCAAATTTGTTGTTCAGACAGTGG-CAAACTGCAAACTA 238
consensus_5091#2      CATCCCCTCCATTCATCATACTCAAATTTGTTGTTCAGACAGTGG-CAAACTGCAAACTA 211
consensus_5091#1      CCAGATTGTGATAAAATAATTACTAGCCTAATAGACCAACGTCGAATAGGATGCAACCGA 194
                      *         **  *  *    * *   *  *   *  **   *   *   ***** * *

consensus_5091#0      TAAGGTCAGTGCCGAGAATCTTGTGTATCCAATTTTCCTCAGCCAAGACCCAGATTGTGA 298
consensus_5091#2      TAAGGTCAGTGCCGAGAATCTTGTGTATCCAATTTTCCTCAGGTATA--TTATATTGTTT 269
consensus_5091#1      ATCATCGAGTTCTTAACACCTTTGGTGGCCAAG------CAACTAAAATCTGTATTGTTG 248
                             *** *  *  * ***  **  ****       **   *        *****  

consensus_5091#0      TAAAATAATTACTAGCCTAATAGACCAACGTCGAATAGGATGCAACCGAATCATCGAGTT 358
consensus_5091#2      TCTC-------------------------------------------------------- 273
consensus_5091#1      TTTGGGACAATCAGTAAAGACCAAAAAGATGCTAC------------------------- 283
                      *                                                           

consensus_5091#0      CTTAACACCTTTGGTGGCCAAGCAACTAAAATCTGTATTGTTGTTTGGGACAATCAGTAA 418
consensus_5091#2      ------------------------------------------------------------
consensus_5091#1      ------------------------------------------------------------
                                                                                  

consensus_5091#0      AGACCAAAAAGATGCTACAGGATCAGCTTGTGATACACCAAATTCACCAGTCATTCAGGC 478
consensus_5091#2      ------------------------------------------------------------
consensus_5091#1      ------------------------------------------------------------
                                                                                  

consensus_5091#0      AATCAAGTTGCTGAAGTCAAAATTTCCGGATTTAATAGTGATTTGTGATGTTTGTTTGTG 538
consensus_5091#2      ------------------------------------------------------------
consensus_5091#1      ------------------------------------------------------------
                                                                                  

consensus_5091#0      TGCATACACTGACAGTGGTCATTGTGGTATTTTACGTGATGACGGCTGCCTTGACGTACC 598
consensus_5091#2      ------------------------------------------------------------
consensus_5091#1      ------------------------------------------------------------
                                                                                  

consensus_5091#0      TAGAACTCTTGAACGTTTAGCGGAAATATCTAAACGATTTGCCCTAGAAGGAGCTGATGT 658
consensus_5091#2      ------------------------------------------------------------
consensus_5091#1      ------------------------------------------------------------
                                                                                  

consensus_5091#0      TATTGCCCCTTCTGACATGATGGATGGACGTGTGAAA 695
consensus_5091#2      -------------------------------------
consensus_5091#1      -------------------------------------