cluster # 5093

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Schistosoma mansoni
cluster # 5093 cluster # 5093 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5093#0 length = 557 sequences # 2

consensus_5093#1 length = 338 sequences # 1

consensusID : consensus_5093#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 557
fasta sequence

                              [ACGGTATGAAAAGTCATTACATGCCGATGTTACTAATGCGAGTTTATTTTTCTTATTGCAGGGCAACAAAAAATCCCATTAAGCTATACATTGATAGATAATGGAGTTCAAGTCTCCTGCAGTCGCAAAACATAAACTTATCCGCCTTCAGTTTTATAATTGTCCACCAAGTGATATTATCGAACTAAATGAACTAGAAGATTATGCCGTTCATCGTATTCGAGTGCTAAAATGTGTCGAGGCTGTAGGGCAAGATTATATTCGAGGCACCAAGGATTATGACGATAAAATGATAACGGAATTAACAAAGATAAGCGGCTTCGGGAAGATATTTACTTCTCCTTCTTCCTCCTTAAAGAATGCAAAGGAAGACATTCACAAGGACATTGCTTCTCATTTTATTCTACAGGTTGCTTACTGCCGTAGCGAAGATCTACGTCGATGGTTTGTTCAGCAAGAAGTAGATTTATTTCGATTTCGATTTCTCAATGAACGCAACAATTCTACTTTTGGTTCAGAAGTTATTTCAAGATTTCTCTATGANNATCATCTCCATT]

[+] EMBL CD116304             [ACGGTATGAAAAGTCATTACATGCCGATGTTACTAATGCGAGTTTATTTTTCTTATTGCAGGGCAACAAAAAATCCCATTAAGCTATACATTGATAGATAATGGAGTTCAAGTCTCCTGCAGTCGCAAAACATAAACTTATCCGCCTTCAGTTTTATAATTGTCCACCAAGTGATATTATCGAACTAAATGAACTAGAAGATTATGCCGTTCATCGTATTCGAGTGCTAAAATGTGTCGAGGCTGTAGGGCAAGATTATATTCGAGGCACCAAGGATTATGACGATAAAATGATAACGGAATTAACAAAGATAAGCGGCTTCGGGAAGATATTTACTTCTCCTTCTTCCTCCTTAAAGAATGCAAAGGAAGACATTCACAAGGACATTGCTTCTCATTTTATTCTACAGGTTGCTTACTGCCGTAGCGAAGATCTACGTCGATGGTTTGTTCAGCAAGAAGTAGATTTATTTCGATTTCGATTTCTCAATGAACGCAACAATTCTACTTTTGGTTCAGAAGTTATTTCAAGATTTCTCTATGANNATCATCTCCATT]
[+] EMBL CD116003             [ACGGTATGAAAAGTCATTACATGCCGATGTTACTAATGCGAGTTTATTTTTCTTATTGCAGGGCAACAAAAAATCCCATTAAGCTATACATTGATAGATAATGGAGTTCAAGTCTCCTGCAGTCGCAAAACATAAACTTATCCGCCTTCAGTTTTATAATTGTCCACCAAGTGATATTATCGAACTAAATGAACTAGAAGATTATGCCGTTCATCGTATTCGAGTGCTCAAATGTGTCGAGGCTGTAGGGCAAGATTATATTCGAGGCACCAAGGATTATGACGATAAAATGATAACGGAATTAACAAAGATAAGCGGCTTCGGGAAGATATTTACTTCTCCTTCTTCCTCCTTAAAGAATGCAAAGGAAGACATTCACAAGGACATTGTTTCTCATTTTATTCTACAGGTTGCTTACTGCCGTAGCGAAGATCTACGTCGATGGTTTGTTCAGCAAGAAGTAGATTTATTTCGATTTCGATTTCTCAATGAACGNCACAATTCTACTTTTGGTTCAGAAGTTATTTCAAGATTTCTCTATGAAAATCATCTCCA  ]




>consensus_5093#0
ACGGTATGAAAAGTCATTACATGCCGATGTTACTAATGCGAGTTTATTTTTCTTATTGCA
GGGCAACAAAAAATCCCATTAAGCTATACATTGATAGATAATGGAGTTCAAGTCTCCTGC
AGTCGCAAAACATAAACTTATCCGCCTTCAGTTTTATAATTGTCCACCAAGTGATATTAT
CGAACTAAATGAACTAGAAGATTATGCCGTTCATCGTATTCGAGTGCTAAAATGTGTCGA
GGCTGTAGGGCAAGATTATATTCGAGGCACCAAGGATTATGACGATAAAATGATAACGGA
ATTAACAAAGATAAGCGGCTTCGGGAAGATATTTACTTCTCCTTCTTCCTCCTTAAAGAA
TGCAAAGGAAGACATTCACAAGGACATTGCTTCTCATTTTATTCTACAGGTTGCTTACTG
CCGTAGCGAAGATCTACGTCGATGGTTTGTTCAGCAAGAAGTAGATTTATTTCGATTTCG
ATTTCTCAATGAACGCAACAATTCTACTTTTGGTTCAGAAGTTATTTCAAGATTTCTCTA
TGANNATCATCTCCATT

consensusID : consensus_5093#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 338
fasta sequence

                              [TCAATGTATAGCTTAATGGGATTGTGTAGCACGTGATGTATTGACGTTTACTTGGTAGCAGGAGCGATCTGAAACAACACAACAACAGTCAGGACCGGTAAGTGCCTCTGAATTAAGAACGCGGTTTACTGACGCAACAGATATATTTTTAAAATTGAAAGACGAGGTTCGAGTACAAAAGGGGAAATTTATTACAAAATAGTTTTTCTCGTTGTTCTGAAGGTTCAGATCGCGTAGGGCTTGTTCCTCTTCCTTCAGTGCGCTCACTTTTTGTTGCCCTGCAATAAGAAAAACAAACTCGCATTAGTAACATCGGCATGTAATGACTTTTCATACCG]

[+] EMBL CD131189             [TCAATGTATAGCTTAATGGGATTGTGTAGCACGTGATGTATTGACGTTTACTTGGTAGCAGGAGCGATCTGAAACAACACAACAACAGTCAGGACCGGTAAGTGCCTCTGAATTAAGAACGCGGTTTACTGACGCAACAGATATATTTTTAAAATTGAAAGACGAGGTTCGAGTACAAAAGGGGAAATTTATTACAAAATAGTTTTTCTCGTTGTTCTGAAGGTTCAGATCGCGTAGGGCTTGTTCCTCTTCCTTCAGTGCGCTCACTTTTTGTTGCCCTGCAATAAGAAAAACAAACTCGCATTAGTAACATCGGCATGTAATGACTTTTCATACCG]




>consensus_5093#1
TCAATGTATAGCTTAATGGGATTGTGTAGCACGTGATGTATTGACGTTTACTTGGTAGCA
GGAGCGATCTGAAACAACACAACAACAGTCAGGACCGGTAAGTGCCTCTGAATTAAGAAC
GCGGTTTACTGACGCAACAGATATATTTTTAAAATTGAAAGACGAGGTTCGAGTACAAAA
GGGGAAATTTATTACAAAATAGTTTTTCTCGTTGTTCTGAAGGTTCAGATCGCGTAGGGC
TTGTTCCTCTTCCTTCAGTGCGCTCACTTTTTGTTGCCCTGCAATAAGAAAAACAAACTC
GCATTAGTAACATCGGCATGTAATGACTTTTCATACCG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5093#0      ACGGTATGAAAAGTCATTACATGCCGATGTTACTAATGCGAGTTTATTTTTCTTATTGCA 60
consensus_5093#1      ------------------------------------------------------------
                                                                                  

consensus_5093#0      GGGCAACAAAAAATCCCATTAAGCTATACATTGATAGATAATGGAGTTCAAGTCTCCTGC 120
consensus_5093#1      ------------------------------------------------------------
                                                                                  

consensus_5093#0      AGTCGCAAAACATAAACTTATCCGCCTTCAGTTTTATAATTGTCCACCAAGTGATATTAT 180
consensus_5093#1      -----------------------------------------------------TCAATGT 7
                                                                             * * *

consensus_5093#0      CGAACTAAATGAACTAGAAGATTATGCCGTTCATCG-TATTCGAGTGCTAAAATGTGTCG 239
consensus_5093#1      ATAGCTTAATGGGATTGTGTAGCACGTGATGTATTGACGTTTACTTGGTAGCAGGAG-CG 66
                        * ** ****   * *   *  * *   *  ** *   **    ** **  * * * **

consensus_5093#0      AGGCTGTAGGGCAAGATTATATTCGAGGCACCAAGGATTATGACGATAAAATGATAACGG 299
consensus_5093#1      ATCTGAAACAACACAACAACAGTCAGG--ACCGGTAA--GTGCCTCTGAATTAAGAACGC 122
                      *      *   **  *  * * **  *  ***    *   ** *  * ** * * **** 

consensus_5093#0      AATTAACAAAGATAAGCGGCTTCGGGAAGATATTTACTTCTCCTTCTTCCTCCTTAAAGA 359
consensus_5093#1      GGTTTACTGACGCAA-------CAGATATATTTTTAAAATTGAAAGACGAGGTTC---GA 172
                        ** **  *   **       * *  * ** ****    *            *    **

consensus_5093#0      ATGCAAAGGAAGACATTCACAAGGACATTGCTTCTCATTTTATTCTACAGGTTGCTTACT 419
consensus_5093#1      GTACAAAAGGGGAAATTTATTACAAAATAGTTTTTCTCGTTGTTCTGAAGGTT-----CA 227
                       * **** *  ** *** *  *  * ** * ** **   ** ****  *****     * 

consensus_5093#0      GCCGTAGCGAAGATCTACGTCGATGGTTTGTTCAGCAAGAAGTAGATTTATTTCGATTTC 479
consensus_5093#1      G--ATCGCGTAGGGCTTGTTCCTC--TTCCTTCA-------GTGCGCTCACTTT--TTGT 274
                      *   * *** **  **   **     **  ****       **    * * **   **  

consensus_5093#0      GATTTCTCAATGAACGCAACAATTCTACTTTTGGTTCAGAAGTTATTTCAAGATTTCTCT 539
consensus_5093#1      TGCCCTGCAATAAGAAAAACAAACTCGCATTAGTAACATCGGC-ATGTAATGACTTTTC- 332
                             **** *    *****     * ** *   **   *  ** * * ** ** ** 

consensus_5093#0      ATGANNATCATCTCCATT 557
consensus_5093#1      ATACCG------------ 338
                      **