These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5093#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 557 fasta sequence [ACGGTATGAAAAGTCATTACATGCCGATGTTACTAATGCGAGTTTATTTTTCTTATTGCAGGGCAACAAAAAATCCCATTAAGCTATACATTGATAGATAATGGAGTTCAAGTCTCCTGCAGTCGCAAAACATAAACTTATCCGCCTTCAGTTTTATAATTGTCCACCAAGTGATATTATCGAACTAAATGAACTAGAAGATTATGCCGTTCATCGTATTCGAGTGCTAAAATGTGTCGAGGCTGTAGGGCAAGATTATATTCGAGGCACCAAGGATTATGACGATAAAATGATAACGGAATTAACAAAGATAAGCGGCTTCGGGAAGATATTTACTTCTCCTTCTTCCTCCTTAAAGAATGCAAAGGAAGACATTCACAAGGACATTGCTTCTCATTTTATTCTACAGGTTGCTTACTGCCGTAGCGAAGATCTACGTCGATGGTTTGTTCAGCAAGAAGTAGATTTATTTCGATTTCGATTTCTCAATGAACGCAACAATTCTACTTTTGGTTCAGAAGTTATTTCAAGATTTCTCTATGANNATCATCTCCATT] [+] EMBL CD116304 [ACGGTATGAAAAGTCATTACATGCCGATGTTACTAATGCGAGTTTATTTTTCTTATTGCAGGGCAACAAAAAATCCCATTAAGCTATACATTGATAGATAATGGAGTTCAAGTCTCCTGCAGTCGCAAAACATAAACTTATCCGCCTTCAGTTTTATAATTGTCCACCAAGTGATATTATCGAACTAAATGAACTAGAAGATTATGCCGTTCATCGTATTCGAGTGCTAAAATGTGTCGAGGCTGTAGGGCAAGATTATATTCGAGGCACCAAGGATTATGACGATAAAATGATAACGGAATTAACAAAGATAAGCGGCTTCGGGAAGATATTTACTTCTCCTTCTTCCTCCTTAAAGAATGCAAAGGAAGACATTCACAAGGACATTGCTTCTCATTTTATTCTACAGGTTGCTTACTGCCGTAGCGAAGATCTACGTCGATGGTTTGTTCAGCAAGAAGTAGATTTATTTCGATTTCGATTTCTCAATGAACGCAACAATTCTACTTTTGGTTCAGAAGTTATTTCAAGATTTCTCTATGANNATCATCTCCATT] [+] EMBL CD116003 [ACGGTATGAAAAGTCATTACATGCCGATGTTACTAATGCGAGTTTATTTTTCTTATTGCAGGGCAACAAAAAATCCCATTAAGCTATACATTGATAGATAATGGAGTTCAAGTCTCCTGCAGTCGCAAAACATAAACTTATCCGCCTTCAGTTTTATAATTGTCCACCAAGTGATATTATCGAACTAAATGAACTAGAAGATTATGCCGTTCATCGTATTCGAGTGCTCAAATGTGTCGAGGCTGTAGGGCAAGATTATATTCGAGGCACCAAGGATTATGACGATAAAATGATAACGGAATTAACAAAGATAAGCGGCTTCGGGAAGATATTTACTTCTCCTTCTTCCTCCTTAAAGAATGCAAAGGAAGACATTCACAAGGACATTGTTTCTCATTTTATTCTACAGGTTGCTTACTGCCGTAGCGAAGATCTACGTCGATGGTTTGTTCAGCAAGAAGTAGATTTATTTCGATTTCGATTTCTCAATGAACGNCACAATTCTACTTTTGGTTCAGAAGTTATTTCAAGATTTCTCTATGAAAATCATCTCCA ] consensusID : consensus_5093#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 338 fasta sequence [TCAATGTATAGCTTAATGGGATTGTGTAGCACGTGATGTATTGACGTTTACTTGGTAGCAGGAGCGATCTGAAACAACACAACAACAGTCAGGACCGGTAAGTGCCTCTGAATTAAGAACGCGGTTTACTGACGCAACAGATATATTTTTAAAATTGAAAGACGAGGTTCGAGTACAAAAGGGGAAATTTATTACAAAATAGTTTTTCTCGTTGTTCTGAAGGTTCAGATCGCGTAGGGCTTGTTCCTCTTCCTTCAGTGCGCTCACTTTTTGTTGCCCTGCAATAAGAAAAACAAACTCGCATTAGTAACATCGGCATGTAATGACTTTTCATACCG] [+] EMBL CD131189 [TCAATGTATAGCTTAATGGGATTGTGTAGCACGTGATGTATTGACGTTTACTTGGTAGCAGGAGCGATCTGAAACAACACAACAACAGTCAGGACCGGTAAGTGCCTCTGAATTAAGAACGCGGTTTACTGACGCAACAGATATATTTTTAAAATTGAAAGACGAGGTTCGAGTACAAAAGGGGAAATTTATTACAAAATAGTTTTTCTCGTTGTTCTGAAGGTTCAGATCGCGTAGGGCTTGTTCCTCTTCCTTCAGTGCGCTCACTTTTTGTTGCCCTGCAATAAGAAAAACAAACTCGCATTAGTAACATCGGCATGTAATGACTTTTCATACCG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5093#0 ACGGTATGAAAAGTCATTACATGCCGATGTTACTAATGCGAGTTTATTTTTCTTATTGCA 60 consensus_5093#1 ------------------------------------------------------------ consensus_5093#0 GGGCAACAAAAAATCCCATTAAGCTATACATTGATAGATAATGGAGTTCAAGTCTCCTGC 120 consensus_5093#1 ------------------------------------------------------------ consensus_5093#0 AGTCGCAAAACATAAACTTATCCGCCTTCAGTTTTATAATTGTCCACCAAGTGATATTAT 180 consensus_5093#1 -----------------------------------------------------TCAATGT 7 * * * consensus_5093#0 CGAACTAAATGAACTAGAAGATTATGCCGTTCATCG-TATTCGAGTGCTAAAATGTGTCG 239 consensus_5093#1 ATAGCTTAATGGGATTGTGTAGCACGTGATGTATTGACGTTTACTTGGTAGCAGGAG-CG 66 * ** **** * * * * * * ** * ** ** ** * * * ** consensus_5093#0 AGGCTGTAGGGCAAGATTATATTCGAGGCACCAAGGATTATGACGATAAAATGATAACGG 299 consensus_5093#1 ATCTGAAACAACACAACAACAGTCAGG--ACCGGTAA--GTGCCTCTGAATTAAGAACGC 122 * * ** * * * ** * *** * ** * * ** * * **** consensus_5093#0 AATTAACAAAGATAAGCGGCTTCGGGAAGATATTTACTTCTCCTTCTTCCTCCTTAAAGA 359 consensus_5093#1 GGTTTACTGACGCAA-------CAGATATATTTTTAAAATTGAAAGACGAGGTTC---GA 172 ** ** * ** * * * ** **** * * ** consensus_5093#0 ATGCAAAGGAAGACATTCACAAGGACATTGCTTCTCATTTTATTCTACAGGTTGCTTACT 419 consensus_5093#1 GTACAAAAGGGGAAATTTATTACAAAATAGTTTTTCTCGTTGTTCTGAAGGTT-----CA 227 * **** * ** *** * * * ** * ** ** ** **** ***** * consensus_5093#0 GCCGTAGCGAAGATCTACGTCGATGGTTTGTTCAGCAAGAAGTAGATTTATTTCGATTTC 479 consensus_5093#1 G--ATCGCGTAGGGCTTGTTCCTC--TTCCTTCA-------GTGCGCTCACTTT--TTGT 274 * * *** ** ** ** ** **** ** * * ** ** consensus_5093#0 GATTTCTCAATGAACGCAACAATTCTACTTTTGGTTCAGAAGTTATTTCAAGATTTCTCT 539 consensus_5093#1 TGCCCTGCAATAAGAAAAACAAACTCGCATTAGTAACATCGGC-ATGTAATGACTTTTC- 332 **** * ***** * ** * ** * ** * * ** ** ** consensus_5093#0 ATGANNATCATCTCCATT 557 consensus_5093#1 ATACCG------------ 338 ** |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||