cluster # 5094

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Schistosoma mansoni
cluster # 5094 cluster # 5094 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5094#0 length = 626 sequences # 1

consensus_5094#1 length = 376 sequences # 2

consensusID : consensus_5094#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 626
fasta sequence

                              [TGGATAAATAATAATACTACTAGACTGGCTCAGGAACCGATATGTGGCCAATGACCTTGAGCAGAGGAATAACTCATCAAAATTATATTGCCTAAATTTGTAATTTACAATTACTTTGTATCCGCTTCTCAACAACACATGATCTATTTGATTTCCTGGGATATCATCTCTCATTTTTTTTTTGTCTTCATATGTGCTTTAGTGTGTATGGATATCAGTCTCTTTTTTCTATGTTTTCCAGTCTCTGTATTACACTGTGCATGTGATTAGTTTAAAATTTTCCATTATTGTTTTATAGGTGTCTAAATTCATCGGATCACACCGGGTTATGTTGGTCATGAAGAAGGTGGTCAGCTTACACGAGCTTTAGCTGCTTGTCCGAATGCAGTTGTTTTGTTTGATGAGACGGAGAAAGCTCATCCAGATGTTTTGACAGCTTTGNTACAGTTATTCGATGAAGTAGGTCACATTTATTCTATACAACTTTGTAGTGTATGCTTTTTTGATAAACTCAGATTAAAAATATACTTATAAGTATTCCGTAAATTAAATGGTGAACTAATAGACTTTGCTAGTGTTATAATGGACGGAAGTGAAAGTTCATTAGTAACTTTAGTATCCCTATC]

[+] EMBL CD115989             [TGGATAAATAATAATACTACTAGACTGGCTCAGGAACCGATATGTGGCCAATGACCTTGAGCAGAGGAATAACTCATCAAAATTATATTGCCTAAATTTGTAATTTACAATTACTTTGTATCCGCTTCTCAACAACACATGATCTATTTGATTTCCTGGGATATCATCTCTCATTTTTTTTTTGTCTTCATATGTGCTTTAGTGTGTATGGATATCAGTCTCTTTTTTCTATGTTTTCCAGTCTCTGTATTACACTGTGCATGTGATTAGTTTAAAATTTTCCATTATTGTTTTATAGGTGTCTAAATTCATCGGATCACACCGGGTTATGTTGGTCATGAAGAAGGTGGTCAGCTTACACGAGCTTTAGCTGCTTGTCCGAATGCAGTTGTTTTGTTTGATGAGACGGAGAAAGCTCATCCAGATGTTTTGACAGCTTTGNTACAGTTATTCGATGAAGTAGGTCACATTTATTCTATACAACTTTGTAGTGTATGCTTTTTTGATAAACTCAGATTAAAAATATACTTATAAGTATTCCGTAAATTAAATGGTGAACTAATAGACTTTGCTAGTGTTATAATGGACGGAAGTGAAAGTTCATTAGTAACTTTAGTATCCCTATC]




>consensus_5094#0
TGGATAAATAATAATACTACTAGACTGGCTCAGGAACCGATATGTGGCCAATGACCTTGA
GCAGAGGAATAACTCATCAAAATTATATTGCCTAAATTTGTAATTTACAATTACTTTGTA
TCCGCTTCTCAACAACACATGATCTATTTGATTTCCTGGGATATCATCTCTCATTTTTTT
TTTGTCTTCATATGTGCTTTAGTGTGTATGGATATCAGTCTCTTTTTTCTATGTTTTCCA
GTCTCTGTATTACACTGTGCATGTGATTAGTTTAAAATTTTCCATTATTGTTTTATAGGT
GTCTAAATTCATCGGATCACACCGGGTTATGTTGGTCATGAAGAAGGTGGTCAGCTTACA
CGAGCTTTAGCTGCTTGTCCGAATGCAGTTGTTTTGTTTGATGAGACGGAGAAAGCTCAT
CCAGATGTTTTGACAGCTTTGNTACAGTTATTCGATGAAGTAGGTCACATTTATTCTATA
CAACTTTGTAGTGTATGCTTTTTTGATAAACTCAGATTAAAAATATACTTATAAGTATTC
CGTAAATTAAATGGTGAACTAATAGACTTTGCTAGTGTTATAATGGACGGAAGTGAAAGT
TCATTAGTAACTTTAGTATCCCTATC

consensusID : consensus_5094#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 376
fasta sequence

                              [CATGACCAACATAACCCGGTGGTGATCCGATGAATTTAGACACTTCATGTTTTTCTTGGTATTCTGACATATCAATACGTATAAAGCCCTTTTTAATGTCTTTATGTAAGTATGCTGCTACTTGTTTAGCCAACTCTGTTTTGCCTATACCGGAGGAACCAAGAAACAGAAATACAAGTGGATGATCTTCATCATACCAACCATTTTCTTTACGTCTTATAGCTGCACTAACAGTGCGAATAGCAGCTTCTTGACCAACAATTACTTTACGTAAACGATTTTCTAGTGGTTGAAGGCGTCTTTCCTCTCGCTCTTTGGCAGCCACTCCTTCTGCCTTCGAATTCCAGCAATAAATGAACCAATTTGGAGTCATTTA]

[-] EMBL CD181208             [CATGACCAACATAACCCGGTGGTGATCCGATGAATTTAGACACTTCATGTTTTTCTTGGTATTCTGACATATCAATACGTATAAAGCCCTTTTTAATGTCTTTATGTAAGTATGCTGCTACTTGTTTAGCCAACTCTGTTTTGCCTATACCGGAGGAACCAAGAAACAGAAATACAAGTGGATGATCTTCATCATACCAACCATTTTCTTTACGTCTTATAGCTGCACTAACAGTGCGAATAGCAGCTTCTTGACCAACAATTACTTTACGTAAACGATTTTCTAGTGGTTGAAGGCGTCTTTCCTCTCGCTCTTTGGCAGCCACTCCTTCTGCC                                         ]
[+] EMBL CD130631             [                                                                                                                                                                                                                                                                     TTACTTTACGTAAACGATTTTCTAGTGGTTGAAGGCGTCTTTCCTCTCGCTCTTTGGCAGCCACTTCTTCTGCCTTCGAATTCCAGCAATAAATGAACCAATTTGGAGTCATTTA]




>consensus_5094#1
CATGACCAACATAACCCGGTGGTGATCCGATGAATTTAGACACTTCATGTTTTTCTTGGT
ATTCTGACATATCAATACGTATAAAGCCCTTTTTAATGTCTTTATGTAAGTATGCTGCTA
CTTGTTTAGCCAACTCTGTTTTGCCTATACCGGAGGAACCAAGAAACAGAAATACAAGTG
GATGATCTTCATCATACCAACCATTTTCTTTACGTCTTATAGCTGCACTAACAGTGCGAA
TAGCAGCTTCTTGACCAACAATTACTTTACGTAAACGATTTTCTAGTGGTTGAAGGCGTC
TTTCCTCTCGCTCTTTGGCAGCCACTCCTTCTGCCTTCGAATTCCAGCAATAAATGAACC
AATTTGGAGTCATTTA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5094#0      TGGATAAATAATAATACTACTAGACTGGCTCAGGAACCGATATGTGGCCAATGACCTTGA 60
consensus_5094#1      ------------------------------------------------------------
                                                                                  

consensus_5094#0      GCAGAGGAATAACTCATCAAAATTATATTGCCTAAATTTGTAATTTACAATTACTTTGTA 120
consensus_5094#1      ------------------------------------------------------------
                                                                                  

consensus_5094#0      TCCGCTTCTCAACAACACATGATCTATTTGATTTCCTGGGATATCATCTCTCATTTTTTT 180
consensus_5094#1      -----------------CATGACCAACATAACCCGGTGGTGA------TCCGATGAATTT 37
                                       ***** * *  * *     ***         **  **   ***

consensus_5094#0      TTTGTCTTCATATGTGCTTTAGTGTGTATGGATATCAGTCTCTTTTTTCTATGTTTTCCA 240
consensus_5094#1      AGACACTTCATGTTTTTCTTGGTATTCTGACATATCAATACGTATAA--AGCCCTTTTTA 95
                           ****** * *   ** ** *      ****** *   * *         ***  *

consensus_5094#0      GTCTCTGTATTACACTGTGCATGTGATTAGTTTAAAATTTTCCATTATTGTTTTATAGGT 300
consensus_5094#1      ATGTCTTTATGTAAGTATGC-TGCTACTTGTTTAG------CCAACTCTGTTTT------ 142
                       * *** ***   * * *** **  * * *****       ***    ******      

consensus_5094#0      GTCTAAATTCATCGGATCACACCGGGTTATGTTGGT-CATGAAGAAGGTGGTCAGCTTAC 359
consensus_5094#1      GCCTA----TACCGGAGGA-ACCAAGAAACAGAAATACAAGTGGATGATCTTCATCATAC 197
                      * ***     * ****  * ***  *  *      * ** *  ** * *  *** * ***

consensus_5094#0      ACGAGCTTTAGCTGCTTGTCCGAATGCAGTTGTTTTGTTTGATGAGACGGAGAAAGCTCA 419
consensus_5094#1      -CAACCATTTTCTTTACGTCT---TATAGCTGCACTAACAGTGCGAATAGCAGCTTCTTG 253
                       * * * **  **    ***    *  ** **   *    *     *  *      **  

consensus_5094#0      TCCAGATGTTTTGACAGCTTTGNTACAGTTATTCGATGAAGTAGGTCACATTTATTCTAT 479
consensus_5094#1      ACCAACAATTACTTTACGT---AAACGATTTTCTAGTGGTTGAAGGCGTCTTTCCTCT-C 309
                       ***    **     *  *     **  ** *    **    * * *   ***  ***  

consensus_5094#0      ACAACTTTGTAGTGTATGCTTTTTTGAT-AAACTCAGATTAAAAATATACTTATAAGTAT 538
consensus_5094#1      GCTCTTTGGCAGCCACTCCTTCTGCCTTCGAATTCCAGCAATAAATGAACCAATTTGGAG 369
                       *   ** * **    * *** *    *  ** **     * ****  **  **  * * 

consensus_5094#0      TCCGTAAATTAAATGGTGAACTAATAGACTTTGCTAGTGTTATAATGGACGGAAGTGAAA 598
consensus_5094#1      TCATTTA----------------------------------------------------- 376
                      **  * *                                                     

consensus_5094#0      GTTCATTAGTAACTTTAGTATCCCTATC 626
consensus_5094#1      ----------------------------