cluster # 51

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Schistosoma mansoni
cluster # 51 cluster # 51 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_51#0 length = 461 sequences # 1

consensus_51#1 length = 361 sequences # 1

consensusID : consensus_51#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 461
fasta sequence

                              [ATTTATTTCAAACGATGTAAACAAAGCCACGAATTGACTGCAGTGTGGAATTTTTGGTGGTGCCCTTTATAATAAGGGATGTGCCAACCAGTTTCTAAATTACCGTGTTTGCACAAGTCACACTTTGAGGGTTTTTGATAAATCGGACCACGATGTTGTAGTACAATTTGTCTGAAAGACTGCCACCTAGAAATTTGTTCTCCAAGTTCTGGACCTGATGAAAAACGGTATTTTTTGAATTCATCATTAGATACTATATAGCATTGTGGTCCAGACTTCATCGCCATATAGAGGAGGAATACATCGTCTTCTGACGAAGAATTTGTACAGAATTTCTGAACAGAGATTCCCAACTGATTTCCTAACACTTTAATGGGATCCCAAAACCATGATTTACGTAAGGTTGTAGACTCTTTACTGACAAAACAAAAGCCCCGGGAATTGAAATCTTTGTTGATCTG]

[+] EMBL AI974981             [ATTTATTTCAAACGATGTAAACAAAGCCACGAATTGACTGCAGTGTGGAATTTTTGGTGGTGCCCTTTATAATAAGGGATGTGCCAACCAGTTTCTAAATTACCGTGTTTGCACAAGTCACACTTTGAGGGTTTTTGATAAATCGGACCACGATGTTGTAGTACAATTTGTCTGAAAGACTGCCACCTAGAAATTTGTTCTCCAAGTTCTGGACCTGATGAAAAACGGTATTTTTTGAATTCATCATTAGATACTATATAGCATTGTGGTCCAGACTTCATCGCCATATAGAGGAGGAATACATCGTCTTCTGACGAAGAATTTGTACAGAATTTCTGAACAGAGATTCCCAACTGATTTCCTAACACTTTAATGGGATCCCAAAACCATGATTTACGTAAGGTTGTAGACTCTTTACTGACAAAACAAAAGCCCCGGGAATTGAAATCTTTGTTGATCTG]




>consensus_51#0
ATTTATTTCAAACGATGTAAACAAAGCCACGAATTGACTGCAGTGTGGAATTTTTGGTGG
TGCCCTTTATAATAAGGGATGTGCCAACCAGTTTCTAAATTACCGTGTTTGCACAAGTCA
CACTTTGAGGGTTTTTGATAAATCGGACCACGATGTTGTAGTACAATTTGTCTGAAAGAC
TGCCACCTAGAAATTTGTTCTCCAAGTTCTGGACCTGATGAAAAACGGTATTTTTTGAAT
TCATCATTAGATACTATATAGCATTGTGGTCCAGACTTCATCGCCATATAGAGGAGGAAT
ACATCGTCTTCTGACGAAGAATTTGTACAGAATTTCTGAACAGAGATTCCCAACTGATTT
CCTAACACTTTAATGGGATCCCAAAACCATGATTTACGTAAGGTTGTAGACTCTTTACTG
ACAAAACAAAAGCCCCGGGAATTGAAATCTTTGTTGATCTG

consensusID : consensus_51#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 361
fasta sequence

                              [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGCTGCAAAAAGTTGCTTCAAACGATGTAAACAAAGCCACGAATTGACTGCAGTGTGGAATTTTTGGTGGTGCCCTTTATAATAAGGGATGTGCCAACCAGTTTCTAAATTACCGTGTATGCACAAGTCACACTTTGAGGGTTTCTGAAAGATAAAATGTAAACAAAATAAGAATTAGATATATATTTAGAGAATTTATCCAGATAAAGATGAACACGTACTGAAATTCGTGAAGTCAGCTAAAACTGCAGGACGGCTGGCTGTTTATTTGAACACAACCTTGGTACAGAGCAACCGGATATGTATGCTCCACACTTTGGCAGTCCAATTT]

[+] EMBL AI394909             [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGCTGCAAAAAGTTGCTTCAAACGATGTAAACAAAGCCACGAATTGACTGCAGTGTGGAATTTTTGGTGGTGCCCTTTATAATAAGGGATGTGCCAACCAGTTTCTAAATTACCGTGTATGCACAAGTCACACTTTGAGGGTTTCTGAAAGATAAAATGTAAACAAAATAAGAATTAGATATATATTTAGAGAATTTATCCAGATAAAGATGAACACGTACTGAAATTCGTGAAGTCAGCTAAAACTGCAGGACGGCTGGCTGTTTATTTGAACACAACCTTGGTACAGAGCAACCGGATATGTATGCTCCACACTTTGGCAGTCCAATTT]




>consensus_51#1
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGCTGCAAAAAGTTGCTTCAAACGATGTAA
ACAAAGCCACGAATTGACTGCAGTGTGGAATTTTTGGTGGTGCCCTTTATAATAAGGGAT
GTGCCAACCAGTTTCTAAATTACCGTGTATGCACAAGTCACACTTTGAGGGTTTCTGAAA
GATAAAATGTAAACAAAATAAGAATTAGATATATATTTAGAGAATTTATCCAGATAAAGA
TGAACACGTACTGAAATTCGTGAAGTCAGCTAAAACTGCAGGACGGCTGGCTGTTTATTT
GAACACAACCTTGGTACAGAGCAACCGGATATGTATGCTCCACACTTTGGCAGTCCAATT
T

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_51#0      ----------------------------------------ATTTATTTCAAACGATGTAA 20
consensus_51#1      TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGCTGCAAAAAGTTGCTTCAAACGATGTAA 60
                                                            * **  **************

consensus_51#0      ACAAAGCCACGAATTGACTGCAGTGTGGAATTTTTGGTGGTGCCCTTTATAATAAGGGAT 80
consensus_51#1      ACAAAGCCACGAATTGACTGCAGTGTGGAATTTTTGGTGGTGCCCTTTATAATAAGGGAT 120
                    ************************************************************

consensus_51#0      GTGCCAACCAGTTTCTAAATTACCGTGTTTGCACAAGTCACACTTTGAGGGTTTTTGATA 140
consensus_51#1      GTGCCAACCAGTTTCTAAATTACCGTGTATGCACAAGTCACACTTTGAGGGTTTCTGAAA 180
                    **************************** ************************* *** *

consensus_51#0      AATCGGACCACGATGTTGTAGTACAATTTGTCTGAAAGACTGCCACCTAGAAATTTGTTC 200
consensus_51#1      GATAAAA---------TGTAA-ACAAAATAAGAATTAGATATATATTTAGAGAAT--TTA 228
                     **   *         ****  ****  *       ***     *  **** * *  ** 

consensus_51#0      TCCAAGTTCTGGACCTGATGAAAAACGGTATTTTTTGAATTCATCATTAGATACTATATA 260
consensus_51#1      TCCAGAT---AAAGATGAACACGTACTGAAATTCGTGAAGTCAGCTAAAACTGCAGGACG 285
                    ****  *     *  ***  *   ** * * **  **** *** *   *  * *   *  

consensus_51#0      GC--ATTGTG-GTCCAGACTTCATCGCCATATAGAGGAGGAATACATCGTCTTCTGACGA 317
consensus_51#1      GCTGGCTGTTTATTTGAACACAACCTTGGTACAGAGCAACCGGATAT-GTATGCT--CCA 342
                    **    ***   *    **   * *    ** **** *     * ** ** * **  * *

consensus_51#0      AGAATTTGTA-CAGAATTTCTGAACAGAGATTCCCAACTGATTTCCTAACACTTTAATGG 376
consensus_51#1      CACTTTGGCAGTCCAATTT----------------------------------------- 361
                        ** * *    *****                                         

consensus_51#0      GATCCCAAAACCATGATTTACGTAAGGTTGTAGACTCTTTACTGACAAAACAAAAGCCCC 436
consensus_51#1      ------------------------------------------------------------
                                                                                

consensus_51#0      GGGAATTGAAATCTTTGTTGATCTG 461
consensus_51#1      -------------------------