These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5101#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 335 fasta sequence [AAAAAGTTGAATGCAATAGCAGTCCGCGGTCCATCAGGTGAAACTTCATTCTCAGTGAGAAAATCTTGTCTTGTATTTTGCCAGCGGTTGCAAAGTAAGCAAAATGCAATCAACCATAGGAAGGACCAAATACCTGACAACACTACGTCGAATTTAGCGATTCGCAAACGTATATCAATGCTTGTAATATTGTCCACTATTAAATCCAACCAAAGATAGGCGAGGCAAAGGATTATTGTTGATGAAGAAAGAAATGAACTATATCCACAAGATGCCTGATCGTCATTAAACAAGCACTTCCCATAAATATAGCAGCCGATATACGTATTCGAGAC] [+] EMBL CD194075 [AAAAAGTTGAATGCAATAGCAGTCCGCGGTCCATCAGGTGAAACTTCATTCTCAGTGAGAAAATCTTGTCTTGTATTTTGCCAGCGGTTGCAAAGTAAGCAAAATGCAATCAACCATAGGAAGGACCAAATACCTGACAACACTACGTCGAATTTAGCGATTCGCAAACGTATATCAATGCTTGTAATATTGTCCACTATTAAATCCAACCAAAGATAGGCGAGGCAAAGGATTATTGTTGATGAAGAAAGAAATGAACTATATCCACAAGATGCCTGATCGTCATTAAACAAGCACTTCCCATAAATATAGCAGCCGATATACGTATTCGAGAC] consensusID : consensus_5101#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 236 fasta sequence [CGCAGCCAAAAATTCGGTCCGAGGGGACTGGTTGACCCTGAGAGTAGTCATGTTTCCCATTGATTGGGTGTGCACTACTGCTCGCTTGGAACCTATAAATTATGTTCGAAAGCCGCAGGTTATTCTACGTTTAGTTGTTGTGATATTAGCAGTTGTCAATATTGCAATTGTACATAACGGCTGCTATATGTATGGGAAGTGCTTGTTTAATGACGATCAGGCATCTTGGTGGATAT] [+] EMBL CD077944 [CGCAGCCAAAAATTCGGTCCGAGGGGACTGGTTGACCCTGAGAGTAGTCATGTTTCCCATTGATTGGGTGTGCACTACTGCTCGCTTGGAACCTATAAATTATGTTCGAAAGCCGCAGGTTATTCTACGTTTAGTTGTTGTGATATTAGCAGTTGTCAATATTGCAATTGTACATAACGGCTGCTATATGTATGGGAAGTGCTTGTTTAATGACGATCAGGCATCTTGGTGGATAT] [+] EMBL CD122561 [ GGACTGGTTGACCCTGAGAGT GTCATGTTTCCCATTGATTGGGTGTGCNCTACTGCTCGCTTGGAACCTATAAATTATGTTCGAAAGCCGCGGGTTATTCTACGTTGAGGGGTTG ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5101#0 AAAAAGTTGAATGCAATAGCAGTCCGCGGTCCATCAGGTGAAACTTCATTCTCAGTGAGA 60 consensus_5101#1 -----------------CGCAGCCAAAAATTCGGTCCGAGGGGACTGGTTGACCCTGAGA 43 **** * * * * * * ** * ***** consensus_5101#0 A-AATCTTGTCTTGTATTTTGCCAGCGGTTGCAAAGTAAGCAAAATGCAATCAACCATAG 119 consensus_5101#1 GTAGTCATGTTTCCCATT--GATTGGGTGTGCACTACTGCTCGCTTGGAACCTATAA-AT 100 * ** *** * *** * * * **** ** ** * * * * consensus_5101#0 GAAGGACCAAATAC-CTGACAACACTACGTCGAATT-TAGCGATTCGCAAACGTATATCA 177 consensus_5101#1 TATGTTCGAAAGCCGCAGGTTATTCTACGTTTAGTTGTTGTGAT--ATTAGCAGTTGTCA 158 * * * *** * * * * ****** * ** * * *** * * * *** consensus_5101#0 ATGCTTGTAATATTGTCCACTATTAAATCCAACCAAAGATAGGCGAGGCAAAGGATTATT 237 consensus_5101#1 ATA-TTGCAAT--TGTACA----TAACGGCTGCTATATGTATGGGAAGTGCTTGTTTAAT 211 ** *** *** *** ** *** * * * * ** * ** * * *** * consensus_5101#0 GTTGATGAAGAAAGAAATGAACTATATCCACAAGATGCCTGATCGTCATTAAACAAGCAC 297 consensus_5101#1 GACGATCAGGCATCTTGGTGGATAT----------------------------------- 236 * *** * * * *** consensus_5101#0 TTCCCATAAATATAGCAGCCGATATACGTATTCGAGAC 335 consensus_5101#1 -------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||