cluster # 5106

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Schistosoma mansoni
cluster # 5106 cluster # 5106 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5106#0 length = 472 sequences # 2

consensus_5106#1 length = 376 sequences # 1

consensusID : consensus_5106#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 472
fasta sequence

                              [TTACCGTACCATAACAACCGCTTATTACCGTGGTGCAATGGGTTTCATATTAATGTATGATATTACCAACGAAGAATCTTTCAATGCTGTTCAGGATTGGGTAACTCAAATTAAAACCTATTCATGGGATAATGCGCAAGTGGTTCTTGTTGGTAATAAATGTGATCTCGTAGATGATAGAGCTGTATCTGTCGATCGAGGCAGACATTTAGCTCATCAGTTGGGCTTGGAATTTTTTGAAGCGTCAGCCAAAGAAAATGTTAACGTAAAGAATGTATTTGATCGTTTAGTTGATATTATATGCGATAAAATGTCTGATAACATAGATAGTAACCCAGGTGTGGTTGGTGGGACATCGAAAGGTAATCGATTGACCGATAAACCTCAACAGCAACAACAAAATCAACAAGGCCAATGTCAGTGTTAAACTCTTGCATAAGCATAGAAGAAAAAGGATAAAAGCTAGTCGCGC]

[+] EMBL AI977097             [TTACCGTACCATAACAACCGCTTATTACCGTGGTGCAATGGGTTTCATATTAATGTATGATATTACCAACGAAGAATCTTTCAATGCTGTTCAGGATTGGGTAACTCAAATTAAAACCTATTCATGGGATAATGCGCAAGTGGTTCTTGTTGGTAATAAATGTGATCTCGTAGATGATAGAGCTGTATCTGTCGATCGAGGCAGACATTTAGCTCATCAGTTGGGCTTGGAATTTTTTGAAGCGTCAGCCAAAGAAAATGTTAACGTAAAGAATGTATTTGATCGTTTAGTTGATATTATATGCGATAAAATGTCTGATAACATAGATAGTAACCCAGGTGTGGTTGGTGGGACATCGAAAGGTAATCGATTGACCGATAAACCTCAACAGCAACAACAAAATCAACAAGGCCAATGTCAGTGTTAAACTCTTGCATA                                  ]
[-] EMBL CD158981             [                                                          GATATTACCACCGAAGAATCTTTCAATGCTGTTCAGGATTGGGTACCTCAAATTAAAACCTATTCATGGGATAATGCGCAAGTGGTTCTTGTTGGTAATAAATGTGATCTCGTAGATGATAGAGCTGTATCTGTCGATCGAGTCAGACATTTAGCTCATCAGTTGGGCTTGGAATTTTTTGAAGCGTCAGCCAAAGAAAATGTTAACGTAAAGAATGTATATGATCGTTTAGTTGATATTATATGCGATAAAATGTCTGATAACATAGATAGTAACCCAGGTGTGGTTGGTGGGACATCGAAAGGTAATCGATTGACCGATAAACCTCAGCAGCAGCAACAAAATCAACAAGGCCAATGTCAGTGTTAAACTCTTGCATAAGCATAGAAGAAAAAGGATAAAAGCTAGTCGCGC]




>consensus_5106#0
TTACCGTACCATAACAACCGCTTATTACCGTGGTGCAATGGGTTTCATATTAATGTATGA
TATTACCAACGAAGAATCTTTCAATGCTGTTCAGGATTGGGTAACTCAAATTAAAACCTA
TTCATGGGATAATGCGCAAGTGGTTCTTGTTGGTAATAAATGTGATCTCGTAGATGATAG
AGCTGTATCTGTCGATCGAGGCAGACATTTAGCTCATCAGTTGGGCTTGGAATTTTTTGA
AGCGTCAGCCAAAGAAAATGTTAACGTAAAGAATGTATTTGATCGTTTAGTTGATATTAT
ATGCGATAAAATGTCTGATAACATAGATAGTAACCCAGGTGTGGTTGGTGGGACATCGAA
AGGTAATCGATTGACCGATAAACCTCAACAGCAACAACAAAATCAACAAGGCCAATGTCA
GTGTTAAACTCTTGCATAAGCATAGAAGAAAAAGGATAAAAGCTAGTCGCGC

consensusID : consensus_5106#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 376
fasta sequence

                              [TTCGGTTGCCATCCAGTGAAAAGCAAGCGACGCAATGAGGTCATTCTAGAGATGCAACTGACCAAAACTTCGATTACATGTTCAAACTGCTTATTATCGGCAATTCATCTGTTGGAAAAACGTCGTTCCTTTTTCGATACGCTGACGATAGCTTCACATCAGCTTTCGTTTCGACTGTCGGTATTGACTTCAAAGTAAAGACAATATTCAGACAAGACAAAAGGGTGAAACTGCAAATATGGGACACAGCTGGTCAGGAACGTTACCGTACCATAACAACCGCTTATTACCGGTGGTGGCAATGGGTTTCAAATAAATGTATGATATTACCAACGGAGAATCTTTCAATTGCTGTTCAGGAGTGGGGAACCCAAAT]

[+] EMBL BE431250             [TTCGGTTGCCATCCAGTGAAAAGCAAGCGACGCAATGAGGTCATTCTAGAGATGCAACTGACCAAAACTTCGATTACATGTTCAAACTGCTTATTATCGGCAATTCATCTGTTGGAAAAACGTCGTTCCTTTTTCGATACGCTGACGATAGCTTCACATCAGCTTTCGTTTCGACTGTCGGTATTGACTTCAAAGTAAAGACAATATTCAGACAAGACAAAAGGGTGAAACTGCAAATATGGGACACAGCTGGTCAGGAACGTTACCGTACCATAACAACCGCTTATTACCGGTGGTGGCAATGGGTTTCAAATAAATGTATGATATTACCAACGGAGAATCTTTCAATTGCTGTTCAGGAGTGGGGAACCCAAAT]




>consensus_5106#1
TTCGGTTGCCATCCAGTGAAAAGCAAGCGACGCAATGAGGTCATTCTAGAGATGCAACTG
ACCAAAACTTCGATTACATGTTCAAACTGCTTATTATCGGCAATTCATCTGTTGGAAAAA
CGTCGTTCCTTTTTCGATACGCTGACGATAGCTTCACATCAGCTTTCGTTTCGACTGTCG
GTATTGACTTCAAAGTAAAGACAATATTCAGACAAGACAAAAGGGTGAAACTGCAAATAT
GGGACACAGCTGGTCAGGAACGTTACCGTACCATAACAACCGCTTATTACCGGTGGTGGC
AATGGGTTTCAAATAAATGTATGATATTACCAACGGAGAATCTTTCAATTGCTGTTCAGG
AGTGGGGAACCCAAAT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5106#0      TTACCGTACCATAACAACCGCTTATTACCGTGGTGCAATGGGTTTCATATTAATGTATGA 60
consensus_5106#1      ------------------------------------------------------------
                                                                                  

consensus_5106#0      TATTACCAACGAAGAATCTTTCAATGCTGTTCAGGATTGGGTAACTCAAATTA-AAACCT 119
consensus_5106#1      ------------------TTCGGTTGCCATCCAGTGAAAAGCAAGCGACGCAATGAGGTC 42
                                        **    ***  * ***      * **   *    *  *    

consensus_5106#0      ATTCATGGGATAATGCGCAAGTGGTTCTTGTTGGTAATAAATGTGATCTCGTAGATGATA 179
consensus_5106#1      ATTCTAGAGATGCAAC-TGACCAAAACTT--CGATTACATGTTCAAACTGCTTATTATCG 99
                      ****  * ***    *   *      ***   * * * *  *   * **  *   *    

consensus_5106#0      GAGCTGTATCTGTCGATCGAGGCAGACATTTAGCTCATCAGTTGGGCTTGGAATTTTTTG 239
consensus_5106#1      GCAATTCATCTGTTGG--AAAAACGTCGTTC--CTTTTTCGATACGCTGACGATAGCTTC 155
                      *   *  ****** *    *    * * **   **  *  * *  ***    **   ** 

consensus_5106#0      AAGCGTCAGCCAAAGAAAATGTTAACGTAAAGAATGTATTTGATCGTTTAGTTGATATT- 298
consensus_5106#1      A--CATCAGCTTTCG----TTTCGACTGTCGGTATTGACTTCAAAGTAAAGACAATATTC 209
                      *  * *****    *    * *  **     * **  * ** *  **  **   ***** 

consensus_5106#0      ATATGCGATAAAATGTCTGATAACATAGATA-GTAACCCAGGTGTGGTTGGTGGGACATC 357
consensus_5106#1      AGACAAGACAAAA-GGGTGAAACTGCAAATATGGGACACAGCTG-GTCAGGAACGTTACC 267
                      * *   ** **** *  *** *    * *** *  ** *** ** *   **   *  * *

consensus_5106#0      GAAAGGTAATCGATTGACCGATAAACCTCAACAGCAACAA---CAAAATCAACA-AGGCC 413
consensus_5106#1      GTACCATAA-CAACCG-CTTATTACCGGTGGTGGCAATGGGTTTCAAATAAATGTATGAT 325
                      * *   *** * *  * *  ** * *       ****        **** **   * *  

consensus_5106#0      AATGTCAGTGTTAAACTCTTGCATAAGCATAGAAGAAAAAGGATAAAAGCTAGTCGCGC 472
consensus_5106#1      ATTACCAACGGAGAATCTTTCAATTGCTGTTCAGGAGTGGGGAACCCAAAT-------- 376
                      * *  **  *   **   **  **     *  * **    ***    *  *