cluster # 511

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Schistosoma mansoni
cluster # 511 cluster # 511 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_511#0 length = 547 sequences # 1

consensus_511#1 length = 518 sequences # 1

consensusID : consensus_511#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 547
fasta sequence

                              [TGTCATCTGACTACTGACTTTCCATCGAATAATCACGAGTGGAATTCATTACCTCAGCACGTGGTGAGGCTCCATCCGTCGACTCCTTCAAAAGAAAGTTGGATCAGCTGAGAGACCATCATTGCCAGGACTAGCACAGGCCATCAAGCCTCCCTTTTCTTTTCCAAACTGATACTGAATCCATAACAATATAAATGAATCAAAGTTGAAAGAGAATCTATTGCATAGTTACTAATTAAGTTACCTTTATWGATTTTTCTTTTCCTTTTTCTTTTTTTGTGGATTCCTTAGATATCTGCTTTATTTCATATATATGGAGTGATATTATACTTATTAATTAAAAATATGGTAAATTGATATATCATCTATTAATGATACATATTAACATCGGAACAATGAACTTATGGCACATCCAATTTCTTCAACATTAAAAGGAAATTATTTCTGTCCCMAAAGGGGTTTTGTGAGTTTTAGTAWTTTAWATAGTAAGATCATAGTCGTCGYTCTAAAAAGCAAGGCTACGACCYCGNATTCGTAATCATGGTCA]

[+] EMBL SM1247321            [TGTCATCTGACTACTGACTTTCCATCGAATAATCACGAGTGGAATTCATTACCTCAGCACGTGGTGAGGCTCCATCCGTCGACTCCTTCAAAAGAAAGTTGGATCAGCTGAGAGACCATCATTGCCAGGACTAGCACAGGCCATCAAGCCTCCCTTTTCTTTTCCAAACTGATACTGAATCCATAACAATATAAATGAATCAAAGTTGAAAGAGAATCTATTGCATAGTTACTAATTAAGTTACCTTTATWGATTTTTCTTTTCCTTTTTCTTTTTTTGTGGATTCCTTAGATATCTGCTTTATTTCATATATATGGAGTGATATTATACTTATTAATTAAAAATATGGTAAATTGATATATCATCTATTAATGATACATATTAACATCGGAACAATGAACTTATGGCACATCCAATTTCTTCAACATTAAAAGGAAATTATTTCTGTCCCMAAAGGGGTTTTGTGAGTTTTAGTAWTTTAWATAGTAAGATCATAGTCGTCGYTCTAAAAAGCAAGGCTACGACCYCGNATTCGTAATCATGGTCA]




>consensus_511#0
TGTCATCTGACTACTGACTTTCCATCGAATAATCACGAGTGGAATTCATTACCTCAGCAC
GTGGTGAGGCTCCATCCGTCGACTCCTTCAAAAGAAAGTTGGATCAGCTGAGAGACCATC
ATTGCCAGGACTAGCACAGGCCATCAAGCCTCCCTTTTCTTTTCCAAACTGATACTGAAT
CCATAACAATATAAATGAATCAAAGTTGAAAGAGAATCTATTGCATAGTTACTAATTAAG
TTACCTTTATWGATTTTTCTTTTCCTTTTTCTTTTTTTGTGGATTCCTTAGATATCTGCT
TTATTTCATATATATGGAGTGATATTATACTTATTAATTAAAAATATGGTAAATTGATAT
ATCATCTATTAATGATACATATTAACATCGGAACAATGAACTTATGGCACATCCAATTTC
TTCAACATTAAAAGGAAATTATTTCTGTCCCMAAAGGGGTTTTGTGAGTTTTAGTAWTTT
AWATAGTAAGATCATAGTCGTCGYTCTAAAAAGCAAGGCTACGACCYCGNATTCGTAATC
ATGGTCA

consensusID : consensus_511#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 518
fasta sequence

                              [TTTTTATTATTAATAAATAATAATCAATAAAAAACTAAATGAATAAAAGGAAGGGGCAACAACCATAACATTTACGAAAAAACCAATATTAATAATAGTAAATTGGAGAAGCTCAATTAAACTGAATTTTTAAGCATCATTCATTAAACATCTTATATTGGTTGGTGACCAGTGTTTCAATTGATAAAAGATACAACAGAATCTAAGGCAATTGACCTCGTAAAAAACAACCTTATATATATATATATATATATATATATGGTTATAAATACATAATATGGAATACAAGTAACTAAATAGAAAATTTAAATTATCTACTCCGCCTGTAGCTCCTCCGGGGGCTACTGCCGGTCCAAAGCCCGGGTAAAGGAGGAGGGTTAGGCATGGGGTTAGCGAACCCATCCCGTAGAAAACCAACTCGCTAAAAAAAACGCTGACCAGGAAAAATTATTCAAGTAACTGAAAATTGTGATATGTTGGTCACGATGAGAAAAAGATTAAACAAAAAAAAGTTAATA]

[+] EMBL CD076640             [TTTTTATTATTAATAAATAATAATCAATAAAAAACTAAATGAATAAAAGGAAGGGGCAACAACCATAACATTTACGAAAAAACCAATATTAATAATAGTAAATTGGAGAAGCTCAATTAAACTGAATTTTTAAGCATCATTCATTAAACATCTTATATTGGTTGGTGACCAGTGTTTCAATTGATAAAAGATACAACAGAATCTAAGGCAATTGACCTCGTAAAAAACAACCTTATATATATATATATATATATATATATGGTTATAAATACATAATATGGAATACAAGTAACTAAATAGAAAATTTAAATTATCTACTCCGCCTGTAGCTCCTCCGGGGGCTACTGCCGGTCCAAAGCCCGGGTAAAGGAGGAGGGTTAGGCATGGGGTTAGCGAACCCATCCCGTAGAAAACCAACTCGCTAAAAAAAACGCTGACCAGGAAAAATTATTCAAGTAACTGAAAATTGTGATATGTTGGTCACGATGAGAAAAAGATTAAACAAAAAAAAGTTAATA]




>consensus_511#1
TTTTTATTATTAATAAATAATAATCAATAAAAAACTAAATGAATAAAAGGAAGGGGCAAC
AACCATAACATTTACGAAAAAACCAATATTAATAATAGTAAATTGGAGAAGCTCAATTAA
ACTGAATTTTTAAGCATCATTCATTAAACATCTTATATTGGTTGGTGACCAGTGTTTCAA
TTGATAAAAGATACAACAGAATCTAAGGCAATTGACCTCGTAAAAAACAACCTTATATAT
ATATATATATATATATATATGGTTATAAATACATAATATGGAATACAAGTAACTAAATAG
AAAATTTAAATTATCTACTCCGCCTGTAGCTCCTCCGGGGGCTACTGCCGGTCCAAAGCC
CGGGTAAAGGAGGAGGGTTAGGCATGGGGTTAGCGAACCCATCCCGTAGAAAACCAACTC
GCTAAAAAAAACGCTGACCAGGAAAAATTATTCAAGTAACTGAAAATTGTGATATGTTGG
TCACGATGAGAAAAAGATTAAACAAAAAAAAGTTAATA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_511#0      TGTCATCTGACTACTGACTTTCCATCGAATAATCACGAGTGGAATTCATTACCTCAGCAC 60
consensus_511#1      -----------TTTTTATTATTAAT-AAATAATAATCAATAAAA--AACTAAATGAATAA 46
                                *  * * * *  **  ****** *  * *  **   * **  * *  * 

consensus_511#0      GTGGT-GAGGCTCCATCCGTCGACTCCTTCAAAAGAAAGTTGGATCAGCTG-AGAGACCA 118
consensus_511#1      AAGGAAGGGGCAACAACCAT-AACATTTACGAAA-AAACCAATATTAATAATAGTAAATT 104
                       **  * ***  ** ** *  **   * * *** ***     ** *     **  *   

consensus_511#0      TCATTGCCAGGACTAGCACAGGCCATCAAGCCTCCCTTTTCTTTTCCAAACTGATACTGA 178
consensus_511#1      GGAGAAGCTCAATTAAACTGAATTTTTAAGCATCA---TTCATTAAACATCTTATATTGG 161
                       *    *   * **          * **** **    *** **    * ** *** ** 

consensus_511#0      ATCCATAACAATATA--AATGAATCAAAGTTGAAAGAGAATCTATTGCA-TAGTTACTAA 235
consensus_511#1      TTGGTGACCAGTGTTTCAATTGATAAAAGATACAACAGAATCTAAGGCAATTGACCTCGT 221
                      *    * ** * *   ***  ** **** *  ** ********  *** * *       

consensus_511#0      TTAAGTTACCTTTATWGATTTTTCTTTTCCTTTTTCTTTTTTTGTGGATTCCTTAGATAT 295
consensus_511#1      AAAAAACAACCTTATATATATATATATATATATATATATGGTTATAAATACAT--AATAT 279
                       **   * * ****  ** * * * *   * * * * *  ** *  ** * *   ****

consensus_511#0      CTGCTTTATTTCATATATATGGAGTGATATTATACTTATTAATTAAAAATATGGTAAATT 355
consensus_511#1      GGAATACAAGTAAC-TAAATAGA---AAATTTAAATTATCTACTCCGCCTGTAGCTCCTC 335
                         *  *  * *  ** ** **   * ***  * ****  * *     * * *    * 

consensus_511#0      ---GATATATCATCTATTAATGATACATATTAACATCGGAACAATGAACTTATGGCACAT 412
consensus_511#1      CGGGGGCTACTGCCGGTCCAAAGCCCGGGT-AAAGGAGGAGGGTTAGGCATGGGGT-TAG 393
                        *   **    *  *  *     *   * **    ***    *   * *  **   * 

consensus_511#0      CCAATTTCTTCAACATTAAAAGGAAATTATTTCTGTCCCMAAAGGGGTTTTGTGAGTTTT 472
consensus_511#1      CGAACCCATCCCGTA------GAAAACCAACTCG--CTAAAAAAAACGCTGACCAGGAAA 445
                     * **    * *   *      * ***  *  **   *   ***      *    **    

consensus_511#0      AGTAWTTTAWATAGT--AAGATCATAGT-CGTCGYTC-TAAAAAGCAAGGCTACGACCYC 528
consensus_511#1      AATTATTCAAGTAACTGAAAATTGTGATATGTTGGTCACGATGAGAAAAAGATTAAACAA 505
                     * *  ** *  **    ** **  *  *  ** * **   *  ** **       * *  

consensus_511#0      GNATTCGTAATCATGGTCA 547
consensus_511#1      AAAAAAGTTAATA------ 518
                       *   ** *  *