cluster # 5115

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Schistosoma mansoni
cluster # 5115 cluster # 5115 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5115#0 length = 375 sequences # 2

consensus_5115#1 length = 344 sequences # 1

consensusID : consensus_5115#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 375
fasta sequence

                              [AGACAGCCATTGATCTGTGTGTTTGATGTCCTACTGTGCCTGCTCCAGTGTAGGTTATAAGACATCGTCCGGTGGCTAATTCCCATAGTTTGACTGCACTATCTTTACCAGAACTAAGGATATACTTTCCATTACGTGAAAAAACTACAGAACACACAGGTGCACCATCGTGTGCAGCTTCAAATGTGTTAACACATCTACATGAAACTCCATCCCAAATCTTGAAGCTGCCATCCATCCCAGCAGTAACAAAAGCAGTTCCATTCGGTGACCACCTCACCATATTAACTGCACTAAGATGTTGGTCTTCTGGAACGGCTGATACATAGCAACGACCGGTTTGTACGTCATATAAACGAAGTGTTTTATGCTGAG]

[+] EMBL CD186705             [AGACAGCCATTGATCTGTGTGTTTGATGTCCTACTGTGCCTGCTCCAGTGTAGGTTATAAGACATCGTCCGGTGGCTAATTCCCATAGTTTGACTGCACTATCTTTACCAGAACTAAGGATATACTTTCCATTACGTGAAAAAACTACAGAACACACAGGTGCACCATCGTGTGCAGCTTCAAATGTGTTAACACATCTACATGAAACTCCATCCCAAATCTTGAAGCTGCCATCCATCCCAGCAGTAACAAAAGCAGTTCCATTCGGTGACCACCTCACCATATTAACTGCACTAAGATGTTGGTCTTCTGGAACGGCTGATACATAGCAACGACCGGTTTGTACGTCATATAAACGAAGTGTTTTATGCTGAG]
[-] EMBL CD192576             [                                                                            TAATTCCCATAGTTTGACTGCACTATCTTTACCAGAACTAAGGATATACTTTCCATTACGTGAAAAAACTACAGAACACACAGGTGCACCATCGTGTGCAGCTTCAAATGTGTTAACACATCTACATGAAACTCCATCCCAAATCTTGAAGCTGCCATCCATCCCAGCAGg                                                                                                                                ]




>consensus_5115#0
AGACAGCCATTGATCTGTGTGTTTGATGTCCTACTGTGCCTGCTCCAGTGTAGGTTATAA
GACATCGTCCGGTGGCTAATTCCCATAGTTTGACTGCACTATCTTTACCAGAACTAAGGA
TATACTTTCCATTACGTGAAAAAACTACAGAACACACAGGTGCACCATCGTGTGCAGCTT
CAAATGTGTTAACACATCTACATGAAACTCCATCCCAAATCTTGAAGCTGCCATCCATCC
CAGCAGTAACAAAAGCAGTTCCATTCGGTGACCACCTCACCATATTAACTGCACTAAGAT
GTTGGTCTTCTGGAACGGCTGATACATAGCAACGACCGGTTTGTACGTCATATAAACGAA
GTGTTTTATGCTGAG

consensusID : consensus_5115#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 344
fasta sequence

                              [TATAAAATAGATTGGATTATTGGTTCGCATCAATGGAATCTATTTGACAAGAATCGTATGTGGTGACCAATGGATCGACCACTCAACAAATTAGGGAATACTGATGATATTATTCACTACAATCTGTTAATGCTTATGCACAAGATATTTCTGCGAAATAAACTGAAATATTGCCCCAAAATGATATTCAAATTTAGATATAAAGGGAAGCATATTCAAACTTTTTAACATACCTTTCCATTACGTGAAAAAACTACAGAACACACAGGTGCACCATCGTGTGCAGCTTCCAAATGTGTTAACACATCTACATGAAACTCCATCCCAAATCTTTGAAGCTGCCA]

[+] EMBL CD187333             [TATAAAATAGATTGGATTATTGGTTCGCATCAATGGAATCTATTTGACAAGAATCGTATGTGGTGACCAATGGATCGACCACTCAACAAATTAGGGAATACTGATGATATTATTCACTACAATCTGTTAATGCTTATGCACAAGATATTTCTGCGAAATAAACTGAAATATTGCCCCAAAATGATATTCAAATTTAGATATAAAGGGAAGCATATTCAAACTTTTTAACATACCTTTCCATTACGTGAAAAAACTACAGAACACACAGGTGCACCATCGTGTGCAGCTTCCAAATGTGTTAACACATCTACATGAAACTCCATCCCAAATCTTTGAAGCTGCCA]




>consensus_5115#1
TATAAAATAGATTGGATTATTGGTTCGCATCAATGGAATCTATTTGACAAGAATCGTATG
TGGTGACCAATGGATCGACCACTCAACAAATTAGGGAATACTGATGATATTATTCACTAC
AATCTGTTAATGCTTATGCACAAGATATTTCTGCGAAATAAACTGAAATATTGCCCCAAA
ATGATATTCAAATTTAGATATAAAGGGAAGCATATTCAAACTTTTTAACATACCTTTCCA
TTACGTGAAAAAACTACAGAACACACAGGTGCACCATCGTGTGCAGCTTCCAAATGTGTT
AACACATCTACATGAAACTCCATCCCAAATCTTTGAAGCTGCCA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5115#0      AGACAGCCATTGATCTGTGTGTTTGAT-GTCCTACTGTGCCTGCTCCAGTGTAGGTTATA 59
consensus_5115#1      ---------------TATAAAATAGATTGGATTATTG-GTTCGCATCAATGGAATCTATT 44
                                     * *    * *** *   ** ** *   **  ** ** *   *** 

consensus_5115#0      AGACATCGTCCGGTGGCTAATTCCCATAGTTTGACTGCACTATCTTTACCAGAACTAAGG 119
consensus_5115#1      TGACAAGAATCGTATGTGGTGACCAATGGATCGACCACTCAACAAATTAGGGAATACTGA 104
                       ****     **   *      ** ** * * ***  * * *    *    ***    * 

consensus_5115#0      ATATACTTTCCATTACGTGAAAAAACTACAGAACACACAGGTGCACCAT-CGTGTGCAGC 178
consensus_5115#1      TGATATTATTCACTAC------AATCTGTT-AATGCTTATGCACAAGATATTTCTGCGAA 157
                        *** * * ** ***      ** **    **  *  * *  **  **   * ***   

consensus_5115#0      TTCAAATGTGTTAACACATCTACATGAAACTCCATCCCAAATCTTGAAGCTGCCATCCAT 238
consensus_5115#1      ATAAACTGAAATATTGCCCCAAAATGATATTCAAATTTAGATATAAAGGGAAGCAT--AT 215
                       * ** **   **   *  * * **** * ** *    * ** *  * *    ***  **

consensus_5115#0      CCCAGCAGTAACAAAAGCAGTTCCATTCGGTGACCACCTCACCATATTAAC---TGCACT 295
consensus_5115#1      TCAAACTTTTTAACATACCTTTCCATTACGTGAAAAAACTACAGAACACACAGGTGCACC 275
                       * * *  *   * *  *  *******  ****  *    **   *   **   ***** 

consensus_5115#0      AAGATGTTGGTCTTCTGGAACGGCTGATACATAGCAACGACCGGTTTGTACGTCATATAA 355
consensus_5115#1      ATCGTGTGCAGCTTCCAAATGTGTTAACACATCTACATGA---AACTCCATCCCAAATCT 332
                      *   ***    ****   *   * * * ****    * **      *  *   ** **  

consensus_5115#0      ACGAAGTGTTTTATGCTGAG 375
consensus_5115#1      TTGAAGC-TGCCA------- 344
                        ****  *   *