cluster # 5120

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Schistosoma mansoni
cluster # 5120 cluster # 5120 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5120#0 length = 249 sequences # 2

consensus_5120#1 length = 119 sequences # 1

consensusID : consensus_5120#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 249
fasta sequence

                              [ACGTTACAAGCACATCGAGCGAATTTGGAGCAGATAAGCTAATATATGCGAGCGAGCGAATACAGAGGCAAATTTATAGTCAGATCGAGTCAATATGCAGCGAGGCAAGGCAAAGGCTATTAAATAGGATTCGTGTACATATACACATGGAAAAGTGGATAATTCACCGAGCAATATTTAAGTGATTAACATTTAAGCTAGAGAGATATGTGTGTAGGCTATCACATGTGATCAAGCGTACATCGTCGG]

[+] EMBL CD192248             [ACGTTACAAGCACATCGAGCGAATTTGGAGCAGATAAGCTAATATATGCGAGCGAGCGAATACAGAGGCAAATTTATAGTCAGATCGAGTCAATATGCAGCGAGGCAAGGCAAAGGCTATTAAATAGGATTCGTGTACATATACACATGGAAAAGTGGATAATTCACCGAGCAATATTTAAGTGATTAACATTTAAGCTAGAGAGATATGTGTGTAGGCTATCACATGTGATCAAGCGTACATCGTCGG]
[-] EMBL CD192505             [                          GGAGCAGATAAGCTAATATATGCGAGCGAGCGAATACAGAGGCAAATTTATAGTCAGATCGAGTCAATATGCAGCGAGGCAAGGCAAAGGCTATTAAATAGGATTCGTGTACATATATACCTGGAAAAGTGGATAATTCACCGAGCAATATTTAAGTGATTAACATTTA                                                      ]




>consensus_5120#0
ACGTTACAAGCACATCGAGCGAATTTGGAGCAGATAAGCTAATATATGCGAGCGAGCGAA
TACAGAGGCAAATTTATAGTCAGATCGAGTCAATATGCAGCGAGGCAAGGCAAAGGCTAT
TAAATAGGATTCGTGTACATATACACATGGAAAAGTGGATAATTCACCGAGCAATATTTA
AGTGATTAACATTTAAGCTAGAGAGATATGTGTGTAGGCTATCACATGTGATCAAGCGTA
CATCGTCGG

consensusID : consensus_5120#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 119
fasta sequence

                              [TCCGTCGTGGGGATAATTCACCGAGCAATATTTAAGTGATTAACATTTAAGCTAGAGAGATATGTGTGTAGGCTATCACATGTGATCAAGCGTACATCGTCGGTCAGTCAGTCAGTCAG]

[+] EMBL CD090228             [TCCGTCGTGGGGATAATTCACCGAGCAATATTTAAGTGATTAACATTTAAGCTAGAGAGATATGTGTGTAGGCTATCACATGTGATCAAGCGTACATCGTCGGTCAGTCAGTCAGTCAG]




>consensus_5120#1
TCCGTCGTGGGGATAATTCACCGAGCAATATTTAAGTGATTAACATTTAAGCTAGAGAGA
TATGTGTGTAGGCTATCACATGTGATCAAGCGTACATCGTCGGTCAGTCAGTCAGTCAG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5120#0      ACGTTACAAGCACATCGAGCGAATTTGGAGCAGATAAGCTAATATATGCGAGCGAGCGAA 60
consensus_5120#1      ------------------------------------------------------------
                                                                                  

consensus_5120#0      TACAGAGGCAAATTTATAGTCAGATCGAGTCAATATGCAGCGAGGCAAGGCAAAGGCTAT 120
consensus_5120#1      ------------------------------------------------------------
                                                                                  

consensus_5120#0      TAAATAGGATTCGTGTACATATACACATGGAAAAGTGGATAATTCACCGAGCAATATTTA 180
consensus_5120#1      --------------------------TCCGTCGTGGGGATAATTCACCGAGCAATATTTA 34
                                                   *    * ************************

consensus_5120#0      AGTGATTAACATTTAAGCTAGAGAGATATGTGTGTAGGCTATCACATGTGATCAAGCGTA 240
consensus_5120#1      AGTGATTAACATTTAAGCTAGAGAGATATGTGTGTAGGCTATCACATGTGATCAAGCGTA 94
                      ************************************************************

consensus_5120#0      CATCGTCGG---------------- 249
consensus_5120#1      CATCGTCGGTCAGTCAGTCAGTCAG 119
                      *********