cluster # 5126

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Schistosoma mansoni
cluster # 5126 cluster # 5126 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5126#0 length = 539 sequences # 2

consensus_5126#1 length = 155 sequences # 1

consensusID : consensus_5126#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 539
fasta sequence

                              [TACGCAGTACGGTAATGCAGCTGCATGGCATGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAATCAATAAAGGAAGATAGTTTATTTGTTTAATCAAATCATAAGGGAATTTTAATCACAATATCTTTCGAAAATTCGTTTAAAGTAGTGCTTAGTATGTTTGTATTTCTGCTGGTATTTTTGCTTCATTGTATTATTTAATCAATTAAATAGAAGATTTTGGTTAGAAAACAAGTACATGTTTAATTAAAGCGTATCATGCCATTAAGTTAAGAAGTATCATAAAGTAACTTGATTAGATTCTGAAAAGATAAAATCAAGGAGATGTAGGAAATAACAGAAATCAATAATAACTTTAGTAGCTATGATTGTCAGTTGAGACAATAAAAATGATTTTAAGAGAATAACTGATACAATAAACACATGCAATTCAAGGATAAATATGTTCAACATAAATGAATTACAATAAAATAAATTTAAGAGTCAAAATCTTCAACTTAAATGAAAAATGTAATCCCACGAAATAACATTCAAGA]

[+] EMBL AI977402             [TACGCAGTACGGTAATGCAGCTGCATGGCATGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAATCAATAAAGGAAGATAGTTTATTTGTTTAATCAAATCATAAGGGAATTTTAATCACAATATCTTTCGAAAATTCGTTTAAAGTAGTGCTTAGTATGTTTGTATTTCTGCTGGTATTTTTGCTTCATTGTATTATTTAATCAATTAAATAGAAGATTTTGGTTAGAAAACAAGTACATGTTTAATTAAAGCGTATCATGCCATTAAGTTAAGAAGTATCATAAAGTAACTTGATTAGATTCTGAAAAGATAAAATCAAGGAGATGTAGGAAATAACAGAAATCAATAATAACTTTAGTAGCTATGATTGTCAGTTGAGACAATAAAAATGATTTTAAGAGAATAACTGATACAATAAACACATGCAATTCAAGGATAAATATGTTCAACATAAATGAATTACAATAAAATAAATTTAAGAGTCAAAATCTTCAACTTAAATGAAAAATGTAATCCCACGAAATAACATTCAAGA]
[+] EMBL AI976730             [                                                                        AAGGAAGATAGTTTATTTGTTTAATCAAATCATAAGGGAATTTTAATCACAATATCTTTCCAAAATTCCTTTAAAGTATTGCTTAATATGTTTGTATTTCTGCTGGTATTTTTGCTTCATTGTTTTATTTAATCAATTTAATTGA                                                                                                                                                                                                                                                                                                                                  ]




>consensus_5126#0
TACGCAGTACGGTAATGCAGCTGCATGGCATGTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TTTAAATCAATAAAGGAAGATAGTTTATTTGTTTAATCAAATCATAAGGGAATTTTAATC
ACAATATCTTTCGAAAATTCGTTTAAAGTAGTGCTTAGTATGTTTGTATTTCTGCTGGTA
TTTTTGCTTCATTGTATTATTTAATCAATTAAATAGAAGATTTTGGTTAGAAAACAAGTA
CATGTTTAATTAAAGCGTATCATGCCATTAAGTTAAGAAGTATCATAAAGTAACTTGATT
AGATTCTGAAAAGATAAAATCAAGGAGATGTAGGAAATAACAGAAATCAATAATAACTTT
AGTAGCTATGATTGTCAGTTGAGACAATAAAAATGATTTTAAGAGAATAACTGATACAAT
AAACACATGCAATTCAAGGATAAATATGTTCAACATAAATGAATTACAATAAAATAAATT
TAAGAGTCAAAATCTTCAACTTAAATGAAAAATGTAATCCCACGAAATAACATTCAAGA

consensusID : consensus_5126#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 155
fasta sequence

                              [AAGATAGTTTATTTGTTTAATCCAAATCATAAGGGAATTTTAATCACAATATCTTTCGAAAATTTCGTTTAAAGTAGTGCTTAGTATGTTTTGTATTTCCTGCTGGTANTTTTTGCCTTCATTTGTATTTANTTTAATTCAATTTAAATAAGAAG]

[-] EMBL SM742                [AAGATAGTTTATTTGTTTAATCCAAATCATAAGGGAATTTTAATCACAATATCTTTCGAAAATTTCGTTTAAAGTAGTGCTTAGTATGTTTTGTATTTCCTGCTGGTANTTTTTGCCTTCATTTGTATTTANTTTAATTCAATTTAAATAAGAAG]




>consensus_5126#1
AAGATAGTTTATTTGTTTAATCCAAATCATAAGGGAATTTTAATCACAATATCTTTCGAA
AATTTCGTTTAAAGTAGTGCTTAGTATGTTTTGTATTTCCTGCTGGTANTTTTTGCCTTC
ATTTGTATTTANTTTAATTCAATTTAAATAAGAAG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5126#0      TACGCAGTACGGTAATGCAGCTGCATGGCATGTTTTTTTTTTTTTTTTTTTTTTTTTTTT 60
consensus_5126#1      ------------------------------------------------------------
                                                                                  

consensus_5126#0      TTTAAATCAATAAAGGAAGATAGTTTATTTGTTTAATC-AAATCATAAGGGAATTTTAAT 119
consensus_5126#1      ----------------AAGATAGTTTATTTGTTTAATCCAAATCATAAGGGAATTTTAAT 44
                                      ********************** *********************

consensus_5126#0      CACAATATCTTTCGAAAATT-CGTTTAAAGTAGTGCTTAGTATGTTT-GTATTTC-TGCT 176
consensus_5126#1      CACAATATCTTTCGAAAATTTCGTTTAAAGTAGTGCTTAGTATGTTTTGTATTTCCTGCT 104
                      ******************** ************************** ******* ****

consensus_5126#0      GGTATTTTTGCTTCATTGTATTATTTAATCAATTAAATAGAAGATTTTGGTTAGAAAACA 236
consensus_5126#1      GGTANTTTT---TGCCTTCATT-TGTATTTANTTTAATTCAA--TTTAAATAAGAAG--- 155
                      **** ****   *   *  *** * ** * * ** ***  **  ***   * ****    

consensus_5126#0      AGTACATGTTTAATTAAAGCGTATCATGCCATTAAGTTAAGAAGTATCATAAAGTAACTT 296
consensus_5126#1      ------------------------------------------------------------
                                                                                  

consensus_5126#0      GATTAGATTCTGAAAAGATAAAATCAAGGAGATGTAGGAAATAACAGAAATCAATAATAA 356
consensus_5126#1      ------------------------------------------------------------
                                                                                  

consensus_5126#0      CTTTAGTAGCTATGATTGTCAGTTGAGACAATAAAAATGATTTTAAGAGAATAACTGATA 416
consensus_5126#1      ------------------------------------------------------------
                                                                                  

consensus_5126#0      CAATAAACACATGCAATTCAAGGATAAATATGTTCAACATAAATGAATTACAATAAAATA 476
consensus_5126#1      ------------------------------------------------------------
                                                                                  

consensus_5126#0      AATTTAAGAGTCAAAATCTTCAACTTAAATGAAAAATGTAATCCCACGAAATAACATTCA 536
consensus_5126#1      ------------------------------------------------------------
                                                                                  

consensus_5126#0      AGA 539
consensus_5126#1      ---