These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_513#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 608 fasta sequence [ACGAGGACCTTTTATATCCAGTTAAAATCGACTCAACGAAGTCAAATTCTTTAGAAAGCTGATAGTTAGCAGCGCTTATCGAAAACAGGCTTGATATATTAACTTCAGTGCGTCANNNNNNNNNNNNNNNNNNNNNNNNTTTACCACCCCAGTTCTCAGAAACCGGGATACTACAACCCATCTGAAATGCAATTCAGTCAGTTTTCATATGAAAATGCAAATCTAATACCGTCACAACCTATCAATCTTCCTTTCTCACAATATGAAGAAAAAGAAGAGGATTATGAAAATGAACCACCTCTGTTAGAAGAACTTGGTATCAACTTTAGTCACATTGTACAAAAGACATCATCTGTCCTCCTTCCTTTTAAGGAAAGTTCTCAAGAAGNNNNNNNNNNNNNNNNNNNNNNTGGACCTTTGGTTTTCTGCCTGCTATTTGGTTGTACTTTAATGCTTGCTGGAAAAATTCACTTCAATTATATCTATGGATTAGGCGTATTTGGTTGCTTAGGTATTTACCTCCTGTTATCAGTTATGACGCCTAGATTAGGATATTGCCTACTTCCAATGTGTCTTCTATCTTCATTTGGGATTATATTTTCTCTTAA] [+] EMBL CD081022 [ACGAGGACCTTTTATATCCAGTTAAAATCGACTCAACGAAGTCAAATTCTTTAGAAAGCTGATAGTTAGCAGCGCTTATCGAAAACAGGCTTGATATATTAACTTCAGTGCGTCANNNNNNNNNNNNNNNNNNNNNNNNTTTACCACCCCAGTTCTCAGAAACCGGGATACTACAACCCATCTGAAATGCAATTCAGTCAGTTTTCATATGAAAATGCAAATCTAATACCGTCACAACCTATCAATCTTCCTTTCTCACAATATGAAGAAAAAGAAGAGGATTATGAAAATGAACCACCTCTGTTAGAAGAACTTGGTATCAACTTTAGTCACATTGTACAAAAGACATCATCTGTCCTCCTTCCTTTTAAGGAAAGTTCTCAAGAAGNNNNNNNNNNNNNNNNNNNNNNTGGACCTTTGGTTTTCTGCCTGCTATTTGGTTGTACTTTAATGCTTGCTGGAAAAATTCACTTCAATTATATCTATGGATTAGGCGTATTTGGTTGCTTAGGTATTTACCTCCTGTTATCAGTTATGACGCCTAGATTAGGATATTGCCTACTTCCAATGTGTCTTCTATCTTCATTTGGGATTATATTTTCTCTTAA] consensusID : consensus_513#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 500 fasta sequence [GTTTTCTGCCTGCTATTTGGTTGGACTTTAATGCTTGCTGGAAAAATTCCCTTCAATTATATTTATGGATTAGGCGTATTTGGTTGCTTAGGTATTTACCTCCTGTTATCAGTTATGACGCCTAGAGGAGTTACCCCAACTTGTGTCATTTCAACATTAGGATATTGCCTACTTCCAATGTGTTTTCTATTTTCATTTGGGATTATATTTTTTTTTAAAAGTATACTAGGTGTCGTATTAACGGCGACTGTTGTTTCGTGGGGCCCAATCGCTTTTAGTAAATTGTTTGTTCGCAGTTTGGATATGCAACACCAACGCATTTTTGTGGGGGATCCATGCGCTTTAGTGTATTGGGTATTTGCCCTTTTAGTTGTGTTTTAATTCGCTTTATGTTATTTAAACCCTTGGATACATAGCTGTCAGATTTGCTGATGAAAAAACTTATGATCTGTAATATTTATCATGTGAGAAAGATACCCTTTTCCCATTAAAATATTCAT] [-] EMBL CD074848 [GTTTTCTGCCTGCTATTTGGTTGGACTTTAATGCTTGCTGGAAAAATTCCCTTCAATTATATTTATGGATTAGGCGTATTTGGTTGCTTAGGTATTTACCTCCTGTTATCAGTTATGACGCCTAGAGGAGTTACCCCAACTTGTGTCATTTCAACATTAGGATATTGCCTACTTCCAATGTGTTTTCTATTTTCATTTGGGATTATATTTTTTTTTAAAAGTATACTAGGTGTCGTATTAACGGCGACTGTTGTTTCGTGGGGCCCAATCGCTTTTAGTAAATTGTTTGTTCGCAGTTTGGATATGCAACACCAACGCATTTTTGTGGGGGATCCATGCGCTTTAGTGTATTGGGTATTTGCCCTTTTAGTTGTGTTTTAATTCGCTTTATGTTATTTAAACCCTTGGATACATAGCTGTCAGATTTGCTGATGAAAAAACTTATGATCTGTAATATTTATCATGTGAGAAAGATACCCTTTTCCCATTAAAATATTCAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_513#0 ACGAGGACCTTTTATATCCAGTTAAAATCGACTCAACGAAGTCAAATTCTTTAGAAAGCT 60 consensus_513#1 ---------------------------------------------GTTTTCTG----CCT 11 ** * * ** consensus_513#0 GATAGTTAGCAGCGCTTATCGAAAACAGGCTTGATATATTAACTTCAGTGCGTCANNNNN 120 consensus_513#1 GCTATTTGGTTGGACTT---TAATGCTTGCTGGAAAAATTCCCTTCAAT-TATATTTATG 67 * ** ** * * *** ** * *** ** * *** ***** * * consensus_513#0 NNNNNNNNNNNNNNNNNNNTTTACCACCCCAGTTCTCAGAAACCGGGATACTACAACCCA 180 consensus_513#1 GATTAGGCGTATTTGGTTGCTTAGGTATTTACCTCCTGTTATCAG-----TTATGACGCC 122 *** * ** * * * ** ** * consensus_513#0 TCTGAAATGCAATTCAGTCAGTTTTCATATGAAAATGCAAATCTAATACCGTCACAACCT 240 consensus_513#1 TAGAGGAGTTACCCCAACTTGTGT-CATTTCAACATTAGGA--TATTGCC--TACTTCCA 177 * * * ** ** * *** * ** ** * ** * ** ** ** consensus_513#0 ATCAATCTTCCTTTCTCACAATATGAAGAAAAAGAAGAGGATTATGAAAATGAACCACCT 300 consensus_513#1 ATGTGTTTTCTATTTTCATT------TGGGATTATATTTTTTTTTAAAAGTATACTAGGT 231 ** * *** ** *** * * * ** * *** * ** * * consensus_513#0 CT---GTTAGAAGAACTTGGTATCAACTTTAGTCACATTGTACAAAAGACATCATCTGTC 357 consensus_513#1 GTCGTATTAACGGCGACTGTTGTTTCGTGGGGCCCAATCGCTTTTAGTAAATTGTTTGTT 291 * *** * ** * * * * * ** * * * ** * *** consensus_513#0 CTCCTTCCTTTTAAGGAAAGTTCTCAAGAAGNNNNNNNNNNNNNNNNNNNNNNTGGACCT 417 consensus_513#1 CGCAGTTTGGATATGCAACACCAACGC-ATTTTTGTGGGGGATCCATGCGCTTTAGTGTA 350 * * * ** * ** * * * * consensus_513#0 TTGGTTTTCTGCCTGCTATTTGGTTGTACTTTAATGCTTGCTGGAAAAATTCACTTCAAT 477 consensus_513#1 TTGGGTATTTGCCCT---TTTAGTTGTGTTTTAATTCGCTTTATGTTATTTAAACCC--T 405 **** * * **** *** ***** ****** * * * ** * * * consensus_513#0 TATATCTATGGATTAGGCGTATTTGGTTGCTTAGGTATTTACCTCCTGTTATCAGTTATG 537 consensus_513#1 TGGATACATAGCT--GTCAGATTTGCTGATGAAAAAACTTATGATCTGTAAT-ATTTATC 462 * ** ** * * * * ***** * * * *** **** ** * **** consensus_513#0 ACGCCTAGATTAGGATATTGCCTACTTCCAATGTGTCTTCTATCTTCATTTGGGATTATA 597 consensus_513#1 ATGT---GAGAAAGATAC--CCTTTTCCCATTAAAATATTCAT----------------- 500 * * ** * **** *** * *** * * ** consensus_513#0 TTTTCTCTTAA 608 consensus_513#1 ----------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||