cluster # 513

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Schistosoma mansoni
cluster # 513 cluster # 513 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_513#0 length = 608 sequences # 1

consensus_513#1 length = 500 sequences # 1

consensusID : consensus_513#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 608
fasta sequence

                              [ACGAGGACCTTTTATATCCAGTTAAAATCGACTCAACGAAGTCAAATTCTTTAGAAAGCTGATAGTTAGCAGCGCTTATCGAAAACAGGCTTGATATATTAACTTCAGTGCGTCANNNNNNNNNNNNNNNNNNNNNNNNTTTACCACCCCAGTTCTCAGAAACCGGGATACTACAACCCATCTGAAATGCAATTCAGTCAGTTTTCATATGAAAATGCAAATCTAATACCGTCACAACCTATCAATCTTCCTTTCTCACAATATGAAGAAAAAGAAGAGGATTATGAAAATGAACCACCTCTGTTAGAAGAACTTGGTATCAACTTTAGTCACATTGTACAAAAGACATCATCTGTCCTCCTTCCTTTTAAGGAAAGTTCTCAAGAAGNNNNNNNNNNNNNNNNNNNNNNTGGACCTTTGGTTTTCTGCCTGCTATTTGGTTGTACTTTAATGCTTGCTGGAAAAATTCACTTCAATTATATCTATGGATTAGGCGTATTTGGTTGCTTAGGTATTTACCTCCTGTTATCAGTTATGACGCCTAGATTAGGATATTGCCTACTTCCAATGTGTCTTCTATCTTCATTTGGGATTATATTTTCTCTTAA]

[+] EMBL CD081022             [ACGAGGACCTTTTATATCCAGTTAAAATCGACTCAACGAAGTCAAATTCTTTAGAAAGCTGATAGTTAGCAGCGCTTATCGAAAACAGGCTTGATATATTAACTTCAGTGCGTCANNNNNNNNNNNNNNNNNNNNNNNNTTTACCACCCCAGTTCTCAGAAACCGGGATACTACAACCCATCTGAAATGCAATTCAGTCAGTTTTCATATGAAAATGCAAATCTAATACCGTCACAACCTATCAATCTTCCTTTCTCACAATATGAAGAAAAAGAAGAGGATTATGAAAATGAACCACCTCTGTTAGAAGAACTTGGTATCAACTTTAGTCACATTGTACAAAAGACATCATCTGTCCTCCTTCCTTTTAAGGAAAGTTCTCAAGAAGNNNNNNNNNNNNNNNNNNNNNNTGGACCTTTGGTTTTCTGCCTGCTATTTGGTTGTACTTTAATGCTTGCTGGAAAAATTCACTTCAATTATATCTATGGATTAGGCGTATTTGGTTGCTTAGGTATTTACCTCCTGTTATCAGTTATGACGCCTAGATTAGGATATTGCCTACTTCCAATGTGTCTTCTATCTTCATTTGGGATTATATTTTCTCTTAA]




>consensus_513#0
ACGAGGACCTTTTATATCCAGTTAAAATCGACTCAACGAAGTCAAATTCTTTAGAAAGCT
GATAGTTAGCAGCGCTTATCGAAAACAGGCTTGATATATTAACTTCAGTGCGTCANNNNN
NNNNNNNNNNNNNNNNNNNTTTACCACCCCAGTTCTCAGAAACCGGGATACTACAACCCA
TCTGAAATGCAATTCAGTCAGTTTTCATATGAAAATGCAAATCTAATACCGTCACAACCT
ATCAATCTTCCTTTCTCACAATATGAAGAAAAAGAAGAGGATTATGAAAATGAACCACCT
CTGTTAGAAGAACTTGGTATCAACTTTAGTCACATTGTACAAAAGACATCATCTGTCCTC
CTTCCTTTTAAGGAAAGTTCTCAAGAAGNNNNNNNNNNNNNNNNNNNNNNTGGACCTTTG
GTTTTCTGCCTGCTATTTGGTTGTACTTTAATGCTTGCTGGAAAAATTCACTTCAATTAT
ATCTATGGATTAGGCGTATTTGGTTGCTTAGGTATTTACCTCCTGTTATCAGTTATGACG
CCTAGATTAGGATATTGCCTACTTCCAATGTGTCTTCTATCTTCATTTGGGATTATATTT
TCTCTTAA

consensusID : consensus_513#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 500
fasta sequence

                              [GTTTTCTGCCTGCTATTTGGTTGGACTTTAATGCTTGCTGGAAAAATTCCCTTCAATTATATTTATGGATTAGGCGTATTTGGTTGCTTAGGTATTTACCTCCTGTTATCAGTTATGACGCCTAGAGGAGTTACCCCAACTTGTGTCATTTCAACATTAGGATATTGCCTACTTCCAATGTGTTTTCTATTTTCATTTGGGATTATATTTTTTTTTAAAAGTATACTAGGTGTCGTATTAACGGCGACTGTTGTTTCGTGGGGCCCAATCGCTTTTAGTAAATTGTTTGTTCGCAGTTTGGATATGCAACACCAACGCATTTTTGTGGGGGATCCATGCGCTTTAGTGTATTGGGTATTTGCCCTTTTAGTTGTGTTTTAATTCGCTTTATGTTATTTAAACCCTTGGATACATAGCTGTCAGATTTGCTGATGAAAAAACTTATGATCTGTAATATTTATCATGTGAGAAAGATACCCTTTTCCCATTAAAATATTCAT]

[-] EMBL CD074848             [GTTTTCTGCCTGCTATTTGGTTGGACTTTAATGCTTGCTGGAAAAATTCCCTTCAATTATATTTATGGATTAGGCGTATTTGGTTGCTTAGGTATTTACCTCCTGTTATCAGTTATGACGCCTAGAGGAGTTACCCCAACTTGTGTCATTTCAACATTAGGATATTGCCTACTTCCAATGTGTTTTCTATTTTCATTTGGGATTATATTTTTTTTTAAAAGTATACTAGGTGTCGTATTAACGGCGACTGTTGTTTCGTGGGGCCCAATCGCTTTTAGTAAATTGTTTGTTCGCAGTTTGGATATGCAACACCAACGCATTTTTGTGGGGGATCCATGCGCTTTAGTGTATTGGGTATTTGCCCTTTTAGTTGTGTTTTAATTCGCTTTATGTTATTTAAACCCTTGGATACATAGCTGTCAGATTTGCTGATGAAAAAACTTATGATCTGTAATATTTATCATGTGAGAAAGATACCCTTTTCCCATTAAAATATTCAT]




>consensus_513#1
GTTTTCTGCCTGCTATTTGGTTGGACTTTAATGCTTGCTGGAAAAATTCCCTTCAATTAT
ATTTATGGATTAGGCGTATTTGGTTGCTTAGGTATTTACCTCCTGTTATCAGTTATGACG
CCTAGAGGAGTTACCCCAACTTGTGTCATTTCAACATTAGGATATTGCCTACTTCCAATG
TGTTTTCTATTTTCATTTGGGATTATATTTTTTTTTAAAAGTATACTAGGTGTCGTATTA
ACGGCGACTGTTGTTTCGTGGGGCCCAATCGCTTTTAGTAAATTGTTTGTTCGCAGTTTG
GATATGCAACACCAACGCATTTTTGTGGGGGATCCATGCGCTTTAGTGTATTGGGTATTT
GCCCTTTTAGTTGTGTTTTAATTCGCTTTATGTTATTTAAACCCTTGGATACATAGCTGT
CAGATTTGCTGATGAAAAAACTTATGATCTGTAATATTTATCATGTGAGAAAGATACCCT
TTTCCCATTAAAATATTCAT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_513#0      ACGAGGACCTTTTATATCCAGTTAAAATCGACTCAACGAAGTCAAATTCTTTAGAAAGCT 60
consensus_513#1      ---------------------------------------------GTTTTCTG----CCT 11
                                                                   ** * *      **

consensus_513#0      GATAGTTAGCAGCGCTTATCGAAAACAGGCTTGATATATTAACTTCAGTGCGTCANNNNN 120
consensus_513#1      GCTATTTGGTTGGACTT---TAATGCTTGCTGGAAAAATTCCCTTCAAT-TATATTTATG 67
                     * ** ** *  *  ***    **  *  *** ** * ***  ***** *   *       

consensus_513#0      NNNNNNNNNNNNNNNNNNNTTTACCACCCCAGTTCTCAGAAACCGGGATACTACAACCCA 180
consensus_513#1      GATTAGGCGTATTTGGTTGCTTAGGTATTTACCTCCTGTTATCAG-----TTATGACGCC 122
                                         ***       *  **     * * *      **  ** * 

consensus_513#0      TCTGAAATGCAATTCAGTCAGTTTTCATATGAAAATGCAAATCTAATACCGTCACAACCT 240
consensus_513#1      TAGAGGAGTTACCCCAACTTGTGT-CATTTCAACATTAGGA--TATTGCC--TACTTCCA 177
                     *     *   *   **    ** * *** * ** **    *  ** * **   **  ** 

consensus_513#0      ATCAATCTTCCTTTCTCACAATATGAAGAAAAAGAAGAGGATTATGAAAATGAACCACCT 300
consensus_513#1      ATGTGTTTTCTATTTTCATT------TGGGATTATATTTTTTTTTAAAAGTATACTAGGT 231
                     **   * ***  ** ***         *  *    *     ** * *** *  ** *  *

consensus_513#0      CT---GTTAGAAGAACTTGGTATCAACTTTAGTCACATTGTACAAAAGACATCATCTGTC 357
consensus_513#1      GTCGTATTAACGGCGACTGTTGTTTCGTGGGGCCCAATCGCTTTTAGTAAATTGTTTGTT 291
                      *    ***   *    ** * *    *   * *  ** *     *  * **  * *** 

consensus_513#0      CTCCTTCCTTTTAAGGAAAGTTCTCAAGAAGNNNNNNNNNNNNNNNNNNNNNNTGGACCT 417
consensus_513#1      CGCAGTTTGGATATGCAACACCAACGC-ATTTTTGTGGGGGATCCATGCGCTTTAGTGTA 350
                     * *  *     ** * **      *   *                        * *    

consensus_513#0      TTGGTTTTCTGCCTGCTATTTGGTTGTACTTTAATGCTTGCTGGAAAAATTCACTTCAAT 477
consensus_513#1      TTGGGTATTTGCCCT---TTTAGTTGTGTTTTAATTCGCTTTATGTTATTTAAACCC--T 405
                     **** * * ****     *** *****  ****** *    *     * ** *   *  *

consensus_513#0      TATATCTATGGATTAGGCGTATTTGGTTGCTTAGGTATTTACCTCCTGTTATCAGTTATG 537
consensus_513#1      TGGATACATAGCT--GTCAGATTTGCTGATGAAAAAACTTATGATCTGTAAT-ATTTATC 462
                     *  **  ** * *  * *  ***** *     *   * ***    **** ** * **** 

consensus_513#0      ACGCCTAGATTAGGATATTGCCTACTTCCAATGTGTCTTCTATCTTCATTTGGGATTATA 597
consensus_513#1      ATGT---GAGAAAGATAC--CCTTTTCCCATTAAAATATTCAT----------------- 500
                     * *    **  * ****   ***  * *** *      *  **                 

consensus_513#0      TTTTCTCTTAA 608
consensus_513#1      -----------