cluster # 5130

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Schistosoma mansoni
cluster # 5130 cluster # 5130 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5130#0 length = 532 sequences # 1

consensus_5130#1 length = 361 sequences # 2

consensusID : consensus_5130#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 532
fasta sequence

                              [GTTGAAGAAACCTAGACAAGAAAAGTTGTCTAAACAAGCTCTCGTCGAAACGTCGTTGGTCAATAACCTCTTTCATTCACCACAACATCTCTGTTGCAGAGGCGTGGGGTAGATCGATGTCATTGAGGAGGTAATCTAACCTTCGTCGATCGATTAGATCTCGGTGTTTAAGAATAGACCTTTACAGTGTTTCACAAGGTTCTGAGCGTCATAAGTGAACATACTATGTGCGATGTANCTGTTGGATTTGCGCGGTGGCGCGTTCGTCACTGTGAGGACTCGTGCACGTGTATAGGTCACGCCGTGCTCGTAGAAGTCAGCTTCTCTGTAGTAGAACCAGGCTTCTGTGTTGTCATTCGGGAATGGCATTAGCTCAAATGTAGATGGTTTCACAGTCTTGATCTTAAATAATTTGGGAGTCTGTTCGGTCCTGATGAAATAAAAGCCTAACAATGAACGAGAAAGAAATATCAAAAATATTTTTGAAAATGTCGCCCTATGTGAAAATTTAAGCCAAAAAGGTATATATAAA]

[+] EMBL CD115663             [GTTGAAGAAACCTAGACAAGAAAAGTTGTCTAAACAAGCTCTCGTCGAAACGTCGTTGGTCAATAACCTCTTTCATTCACCACAACATCTCTGTTGCAGAGGCGTGGGGTAGATCGATGTCATTGAGGAGGTAATCTAACCTTCGTCGATCGATTAGATCTCGGTGTTTAAGAATAGACCTTTACAGTGTTTCACAAGGTTCTGAGCGTCATAAGTGAACATACTATGTGCGATGTANCTGTTGGATTTGCGCGGTGGCGCGTTCGTCACTGTGAGGACTCGTGCACGTGTATAGGTCACGCCGTGCTCGTAGAAGTCAGCTTCTCTGTAGTAGAACCAGGCTTCTGTGTTGTCATTCGGGAATGGCATTAGCTCAAATGTAGATGGTTTCACAGTCTTGATCTTAAATAATTTGGGAGTCTGTTCGGTCCTGATGAAATAAAAGCCTAACAATGAACGAGAAAGAAATATCAAAAATATTTTTGAAAATGTCGCCCTATGTGAAAATTTAAGCCAAAAAGGTATATATAAA]




>consensus_5130#0
GTTGAAGAAACCTAGACAAGAAAAGTTGTCTAAACAAGCTCTCGTCGAAACGTCGTTGGT
CAATAACCTCTTTCATTCACCACAACATCTCTGTTGCAGAGGCGTGGGGTAGATCGATGT
CATTGAGGAGGTAATCTAACCTTCGTCGATCGATTAGATCTCGGTGTTTAAGAATAGACC
TTTACAGTGTTTCACAAGGTTCTGAGCGTCATAAGTGAACATACTATGTGCGATGTANCT
GTTGGATTTGCGCGGTGGCGCGTTCGTCACTGTGAGGACTCGTGCACGTGTATAGGTCAC
GCCGTGCTCGTAGAAGTCAGCTTCTCTGTAGTAGAACCAGGCTTCTGTGTTGTCATTCGG
GAATGGCATTAGCTCAAATGTAGATGGTTTCACAGTCTTGATCTTAAATAATTTGGGAGT
CTGTTCGGTCCTGATGAAATAAAAGCCTAACAATGAACGAGAAAGAAATATCAAAAATAT
TTTTGAAAATGTCGCCCTATGTGAAAATTTAAGCCAAAAAGGTATATATAAA

consensusID : consensus_5130#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 361
fasta sequence

                              [GCGCGGTGGCGCGTTCGTCACTGTGAGGACTCGTGCACGTGTATAGGTCACGCCGTGCTCGTAGAAGTCAGCTTCTCTGTAGTAGAACCAGGCTTCTGTGTTGTCATTCAGGAATGGCATTAGCTCAAATGTAGATGGTTTCACAGTCTTGATCTTAAATAATTTGGGAGTCTGTTCGGTCTTGATGAAATAAAAGCATAACAATGAACGAGAAAGAAATATCCAAAAATATTTTTGAAAATGTCGCAAGTTTACTGTTTAGTGTACTAGGTGACGGCGGATTCACCACTGGAGTCTCCGAGCACATGCATTTGGATCCTGCGGTATAATTCGTACCAGCAGTCATCGACCTACTATTGCT]

[+] EMBL CD128161             [GCGCGGTGGCGCGTTCGTCACTGTGAGGACTCGTGCACGTGTATAGGTCACGCCGTGCTCGTAGAAGTCAGCTTCTCTGTAGTAGAACCAGGCTTCTGTGTTGTCATTCAGGAATGGCATTAGCTCAAATGTAGATGGTTTCACAGTCTTGATCTTAAATAATTTGGGAGTCTGTTCGGTCTTGATGAAATAAAAGCATAACAATGAACGAGAAAGAAATATCCAAAAATATTTTTGAAAATGTCGCAAGTTTACTGTTTAGTGTACTAGGTGACGGCGGATTCACCACTGGAGTCTCCGAGCACATGCATTTGGATCCTGCGGTATAATTCGTACCA                       ]
[-] EMBL CD127962             [ CGCGGTGGCGCGTTCGTCACTGTGAGGACTCGTGCACGTGTATAGGTCACGCCGTGCTCGTAGAAGTCAGCTTCTCTGTAGTAGAACCAGGCTTCTGTGTTGTCATTCAGGAATGGCATTAGCTCAAATGTAGATGGTTTAACAGTCTTGATCTTAAATAATTTGGGAGTCTGTTCGGTCATGATGAAATAAAAGCATAACAATGAACGAGAAAGAAATATCCAAAAATATTTTTGAAAATGTCGCAAGTTTACTGTTTAGTGTACTAGGTGACGGCGGGTTCACCACTGGAGTCTCCGAGCACA GCATTTGGATCCTGCGGTATAATTCGTAACAGCAGTCATCGACCTACTATTGCT]




>consensus_5130#1
GCGCGGTGGCGCGTTCGTCACTGTGAGGACTCGTGCACGTGTATAGGTCACGCCGTGCTC
GTAGAAGTCAGCTTCTCTGTAGTAGAACCAGGCTTCTGTGTTGTCATTCAGGAATGGCAT
TAGCTCAAATGTAGATGGTTTCACAGTCTTGATCTTAAATAATTTGGGAGTCTGTTCGGT
CTTGATGAAATAAAAGCATAACAATGAACGAGAAAGAAATATCCAAAAATATTTTTGAAA
ATGTCGCAAGTTTACTGTTTAGTGTACTAGGTGACGGCGGATTCACCACTGGAGTCTCCG
AGCACATGCATTTGGATCCTGCGGTATAATTCGTACCAGCAGTCATCGACCTACTATTGC
T

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5130#0      GTTGAAGAAACCTAGACAAGAAAAGTTGTCTAAACAAGCTCTCGTCGAAACGTCGTTGGT 60
consensus_5130#1      ------------------------------------------------------------
                                                                                  

consensus_5130#0      CAATAACCTCTTTCATTCACCACAACATCTCTGTTGCAGAGGCGTGGGGTAGATCGATGT 120
consensus_5130#1      ------------------------------------------------------------
                                                                                  

consensus_5130#0      CATTGAGGAGGTAATCTAACCTTCGTCGATCGATTAGATCTCGGTGTTTAAGAATAGACC 180
consensus_5130#1      ------------------------------------------------------------
                                                                                  

consensus_5130#0      TTTACAGTGTTTCACAAGGTTCTGAGCGTCATAAGTGAACATACTATGTGCGATGTANCT 240
consensus_5130#1      ------------------------------------------------------------
                                                                                  

consensus_5130#0      GTTGGATTTGCGCGGTGGCGCGTTCGTCACTGTGAGGACTCGTGCACGTGTATAGGTCAC 300
consensus_5130#1      ---------GCGCGGTGGCGCGTTCGTCACTGTGAGGACTCGTGCACGTGTATAGGTCAC 51
                               ***************************************************

consensus_5130#0      GCCGTGCTCGTAGAAGTCAGCTTCTCTGTAGTAGAACCAGGCTTCTGTGTTGTCATTCGG 360
consensus_5130#1      GCCGTGCTCGTAGAAGTCAGCTTCTCTGTAGTAGAACCAGGCTTCTGTGTTGTCATTCAG 111
                      ********************************************************** *

consensus_5130#0      GAATGGCATTAGCTCAAATGTAGATGGTTTCACAGTCTTGATCTTAAATAATTTGGGAGT 420
consensus_5130#1      GAATGGCATTAGCTCAAATGTAGATGGTTTCACAGTCTTGATCTTAAATAATTTGGGAGT 171
                      ************************************************************

consensus_5130#0      CTGTTCGGTCCTGATGAAATAAAAGCCTAACAATGAACGAGAAAGAAATATC-AAAAATA 479
consensus_5130#1      CTGTTCGGTCTTGATGAAATAAAAGCATAACAATGAACGAGAAAGAAATATCCAAAAATA 231
                      ********** *************** ************************* *******

consensus_5130#0      TTTTTGAAAATGTCGCCCTATGTGAAAATTTAAGCCAAAAAGGTATATATAAA------- 532
consensus_5130#1      TTTTTGAAAATGTCGC---AAGTTTACTGTTTAGTGTACTAGGTGACGGCGGATTCACCA 288
                      ****************   * **  *   ** **   *  ****        *       

consensus_5130#0      ------------------------------------------------------------
consensus_5130#1      CTGGAGTCTCCGAGCACATGCATTTGGATCCTGCGGTATAATTCGTACCAGCAGTCATCG 348
                                                                                  

consensus_5130#0      -------------
consensus_5130#1      ACCTACTATTGCT 361