cluster # 5136

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Schistosoma mansoni
cluster # 5136 cluster # 5136 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5136#0 length = 744 sequences # 1

consensus_5136#1 length = 582 sequences # 2

consensusID : consensus_5136#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 744
fasta sequence

                              [GAGGGCCAGNAATTCGGCACGAGGGTTTTTTTTTATTGAAAATATTTTAGAGACTTGGGAGTTACAGATTTAAGAGTTGATTTAGATCAGTTTTATCAAATTCACGTTGATACAGAACTAATGCGATCTCATGAAGTTTTATTTCAGCCAAGTTTTATGGGTAGTTCAGAAGCTGGTCTCTCCGACTGTTTAGAGTTTGTACTGCGAGATACATCTCGTCTACTTGATAGTTCATCTGAGCCAAACTTTCCTCAAGAATATATCTAACCGGTGGTGTTGCTGCTCTACCTGGTCTTGTCGACCGAATTCGATGCGATATCAGGCCTTTATTACCTGGTGGACCAAAATGGGATAATATTGAAGTTATTGGAGCCGGTAATCCTCATTTGGATGCATGGCATGGAGCTTGTCATTCCGCGAACTCATCATATGCTGAACAGTACTACACAACTAAACACATGTTGAGAGATTCCGGCCATATTATTTAAAGATCATTCTTTAAGGGATACGGTATTGGGTCAATACCACCTGAAATATTTTACACTGAAAAACGCATTGTTCCCTGTAGATTATAATAGGGTGCCACCTAACGGGTCTTTTGGGGGTTCTATTTTAAAAGGATTAATTTTCAAAAGCCCCCCTTTCCCTTTGAAAATTTTTGGGTTTTTAAATAAAAAGTTCATAAAATAAATCCCACCGCATTTTTCTTCCCGGGGTTTTTCCACCCCCTTTAATTAAAAAAAA]

[+] EMBL CD081508             [GAGGGCCAGNAATTCGGCACGAGGGTTTTTTTTTATTGAAAATATTTTAGAGACTTGGGAGTTACAGATTTAAGAGTTGATTTAGATCAGTTTTATCAAATTCACGTTGATACAGAACTAATGCGATCTCATGAAGTTTTATTTCAGCCAAGTTTTATGGGTAGTTCAGAAGCTGGTCTCTCCGACTGTTTAGAGTTTGTACTGCGAGATACATCTCGTCTACTTGATAGTTCATCTGAGCCAAACTTTCCTCAAGAATATATCTAACCGGTGGTGTTGCTGCTCTACCTGGTCTTGTCGACCGAATTCGATGCGATATCAGGCCTTTATTACCTGGTGGACCAAAATGGGATAATATTGAAGTTATTGGAGCCGGTAATCCTCATTTGGATGCATGGCATGGAGCTTGTCATTCCGCGAACTCATCATATGCTGAACAGTACTACACAACTAAACACATGTTGAGAGATTCCGGCCATATTATTTAAAGATCATTCTTTAAGGGATACGGTATTGGGTCAATACCACCTGAAATATTTTACACTGAAAAACGCATTGTTCCCTGTAGATTATAATAGGGTGCCACCTAACGGGTCTTTTGGGGGTTCTATTTTAAAAGGATTAATTTTCAAAAGCCCCCCTTTCCCTTTGAAAATTTTTGGGTTTTTAAATAAAAAGTTCATAAAATAAATCCCACCGCATTTTTCTTCCCGGGGTTTTTCCACCCCCTTTAATTAAAAAAAA]




>consensus_5136#0
GAGGGCCAGNAATTCGGCACGAGGGTTTTTTTTTATTGAAAATATTTTAGAGACTTGGGA
GTTACAGATTTAAGAGTTGATTTAGATCAGTTTTATCAAATTCACGTTGATACAGAACTA
ATGCGATCTCATGAAGTTTTATTTCAGCCAAGTTTTATGGGTAGTTCAGAAGCTGGTCTC
TCCGACTGTTTAGAGTTTGTACTGCGAGATACATCTCGTCTACTTGATAGTTCATCTGAG
CCAAACTTTCCTCAAGAATATATCTAACCGGTGGTGTTGCTGCTCTACCTGGTCTTGTCG
ACCGAATTCGATGCGATATCAGGCCTTTATTACCTGGTGGACCAAAATGGGATAATATTG
AAGTTATTGGAGCCGGTAATCCTCATTTGGATGCATGGCATGGAGCTTGTCATTCCGCGA
ACTCATCATATGCTGAACAGTACTACACAACTAAACACATGTTGAGAGATTCCGGCCATA
TTATTTAAAGATCATTCTTTAAGGGATACGGTATTGGGTCAATACCACCTGAAATATTTT
ACACTGAAAAACGCATTGTTCCCTGTAGATTATAATAGGGTGCCACCTAACGGGTCTTTT
GGGGGTTCTATTTTAAAAGGATTAATTTTCAAAAGCCCCCCTTTCCCTTTGAAAATTTTT
GGGTTTTTAAATAAAAAGTTCATAAAATAAATCCCACCGCATTTTTCTTCCCGGGGTTTT
TCCACCCCCTTTAATTAAAAAAAA

consensusID : consensus_5136#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 582
fasta sequence

                              [AGTTCATCTGAGCCAAACTTTCCTCAAAGAATATATCTAACCGGTGGTGTTGCTGCTCTACCTGGTCTTGTCGACCGAATTCGATGCGATATCAGGCCTTTATTACCTGTTGGACCAAAATGGGATAATATTGAAGTTATTGTAGCCGCTAATCCTCATTTGGATGCATGGCATGGAGCTCGTCATTTCGCGAACTCATCATATGCTGAACAGTACTACACAACTAAACAAATGTATGAAGAATACGGTCCATATTATTTTAAAGATCATCCTTTAGGTAATCGTTATTGGATCAATACAAACTGAAGTATTTAACATTGAAAACCGATTGATTCCTTGTAGAT--AATATCAGTGTACCACTAACTGTATTCTTTGTTGCTTCCATATATTAAATGTAATTAATTTTCAATAAGCACCACTATCCCATTTGAATAATTTATGTATTCTATCATATAAATAAGTTTCATAGATATAATTCCGATCGCATTTTTTCCATTCCATGGTATTTTCACAATCTCATTTAATTAAAAATAAAATCTTTGTTTNTATACTGTTTANGTGGAAGAAAAAAAAAAAAAAAAA]

[-] EMBL CD075332             [AGTTCATCTGAGCCAAACTTTCCTCAAAGAATATATCTAACCGGTGGTGTTGCTGCTCTACCTGGTCTTGTCGACCGAATTCGATGCGATATCAGGCCTTTATTACCTGTTGGACCAAAATGGGATAATATTGAAGTTATTGTAGCCGCTAATCCTCATTTGGATGCATGGCATGGAGCTCGTCATTTCGCGAACTCATCATATGCTGAACAGTACTACACAACTAAACAAATGTATGAAGAATACGGTCCATATTATTTTAAAGATCATCCTTTAGGTAATCGTTATTGGATCAATACAAACTGAAGTATTTAACATTGAAAACCGATTGATTCCTTGTAGAT  AATATCAGTGTACCACTAACTGTATTCTTTGTTGCTTCCATATATTAAATGTAATTAATTTTCAATAAGCACCACTATCCCATTTGAATAATTTATGTATTCTATCATATAAATAAGTTTCATAGATATAATTCCGATCGCATTTTTTCCATTCCATGGTATTTTCACAATCTCATTTAATTAAAAATAAAATC                                            ]
[-] EMBL AI395651             [                                                                                                                                             tTACCCGCTAATCCTCATTTGGATGCATGGCATGGAGCTCGTCATTTCGCGAACTCATCATATGCTGAACAGTACTACACAACTAAACAAATGTATGAAGAATACGGTCCATATTATTTTAAAGATCATCCTTTAGGTAATCGTTATTGGATCAATACAAACTGAAGTATTTAACATTGAAAACCGATTGATTCCTTGTAGATAAAATATCAGTGTACCACTAACTGTATTCTTTGTTGCTTCCATATATTAAATGTAATTAATTTTCAATAAGCACCACTATCCCATTTGAATAATTTATGTATTCTATCATATAAATAAGTTTCATAGATATAATTCCGATCGCATTTTTTCCATTCCATGGTATTTTCACAATCTCATTTAATTAAAAATAAAATCTTTGTTTNTATACTGTTTANGTGGAAGAAAAAAAAAAAAAAAAA]




>consensus_5136#1
AGTTCATCTGAGCCAAACTTTCCTCAAAGAATATATCTAACCGGTGGTGTTGCTGCTCTA
CCTGGTCTTGTCGACCGAATTCGATGCGATATCAGGCCTTTATTACCTGTTGGACCAAAA
TGGGATAATATTGAAGTTATTGTAGCCGCTAATCCTCATTTGGATGCATGGCATGGAGCT
CGTCATTTCGCGAACTCATCATATGCTGAACAGTACTACACAACTAAACAAATGTATGAA
GAATACGGTCCATATTATTTTAAAGATCATCCTTTAGGTAATCGTTATTGGATCAATACA
AACTGAAGTATTTAACATTGAAAACCGATTGATTCCTTGTAGATAATATCAGTGTACCAC
TAACTGTATTCTTTGTTGCTTCCATATATTAAATGTAATTAATTTTCAATAAGCACCACT
ATCCCATTTGAATAATTTATGTATTCTATCATATAAATAAGTTTCATAGATATAATTCCG
ATCGCATTTTTTCCATTCCATGGTATTTTCACAATCTCATTTAATTAAAAATAAAATCTT
TGTTTNTATACTGTTTANGTGGAAGAAAAAAAAAAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5136#0      GAGGGCCAGNAATTCGGCACGAGGGTTTTTTTTTATTGAAAATATTTTAGAGACTTGGGA 60
consensus_5136#1      ------------------------------------------------------------
                                                                                  

consensus_5136#0      GTTACAGATTTAAGAGTTGATTTAGATCAGTTTTATCAAATTCACGTTGATACAGAACTA 120
consensus_5136#1      ------------------------------------------------------------
                                                                                  

consensus_5136#0      ATGCGATCTCATGAAGTTTTATTTCAGCCAAGTTTTATGGGTAGTTCAGAAGCTGGTCTC 180
consensus_5136#1      ------------------------------------------------------------
                                                                                  

consensus_5136#0      TCCGACTGTTTAGAGTTTGTACTGCGAGATACATCTCGTCTACTTGATAGTTCATCTGAG 240
consensus_5136#1      ------------------------------------------------AGTTCATCTGAG 12
                                                                      ************

consensus_5136#0      CCAAACTTTCCTCAA-GAATATATCTAACCGGTGGTGTTGCTGCTCTACCTGGTCTTGTC 299
consensus_5136#1      CCAAACTTTCCTCAAAGAATATATCTAACCGGTGGTGTTGCTGCTCTACCTGGTCTTGTC 72
                      *************** ********************************************

consensus_5136#0      GACCGAATTCGATGCGATATCAGGCCTTTATTACCTGGTGGACCAAAATGGGATAATATT 359
consensus_5136#1      GACCGAATTCGATGCGATATCAGGCCTTTATTACCTGTTGGACCAAAATGGGATAATATT 132
                      ************************************* **********************

consensus_5136#0      GAAGTTATTGGAGCCGGTAATCCTCATTTGGATGCATGGCATGGAGCTTGTCATTCCGCG 419
consensus_5136#1      GAAGTTATTGTAGCCGCTAATCCTCATTTGGATGCATGGCATGGAGCTCGTCATTTCGCG 192
                      ********** ***** ******************************* ****** ****

consensus_5136#0      AACTCATCATATGCTGAACAGTACTACACAACTAAACACATGT-TGAGAGATTCCGGCCA 478
consensus_5136#1      AACTCATCATATGCTGAACAGTACTACACAACTAAACAAATGTATGAAGAATACGGTCCA 252
                      ************************************** **** ***   ** * * ***

consensus_5136#0      TATTATTT-AAAGATCATTCTTTAAGGGATACGGTATTGGGTCAATACCACCTGAAATAT 537
consensus_5136#1      TATTATTTTAAAGATCATCCTTTAGGTAAT-CGTTATTGGATCAATACAAACTGAAGTAT 311
                      ******** ********* ***** *  ** ** ****** ******* * ***** ***

consensus_5136#0      TTTACACTGAAAAACGCATTGTTCCCTGTAGATTATAATAGGGTGCCACCTAACGGGTCT 597
consensus_5136#1      TTAACATTGAAAACCGATTGATTCCTTGTAGATAATATCAGTGTACCACTAACTGTATTC 371
                      ** *** ****** **  *  **** ******* ***  ** ** ****  *  *  *  

consensus_5136#0      TTTGGGGGTTC--TATTTTAAAAG-GATTAATTTTCAA-AAGCCCCCCTTTCCC-TTTGA 652
consensus_5136#1      TTTGTTGCTTCCATATATTAAATGTAATTAATTTTCAATAAGCACCACTATCCCATTTGA 431
                      ****  * ***  *** ***** *  ************ **** ** ** **** *****

consensus_5136#0      A-AATTTTTGGGTTTT----TAAATAAAAAGTTCATAAA-ATAAATCCCACCGCATTTTT 706
consensus_5136#1      ATAATTTATGTATTCTATCATATAAATAAGTTTCATAGATATAATTCCGATCGCATTTTT 491
                      * ***** **  ** *    ** * * **  ****** * **** *** * *********

consensus_5136#0      CT--TCCCGGGGTTTTTCCAC---CCCCTTTAATTAAAAAAAA----------------- 744
consensus_5136#1      TCCATTCCATGGTATTTTCACAATCTCATTTAATTAAAAATAAAATCTTTGTTTNTATAC 551
                          * **  *** *** ***   * * ************ **                 

consensus_5136#0      -------------------------------
consensus_5136#1      TGTTTANGTGGAAGAAAAAAAAAAAAAAAAA 582