These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5140#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 678 fasta sequence [GGATCGAAACTGTTCAGCCCGCCTCATTTCATAAAATAGGAGATCAGACTCTTGTGTTTCATGAATGCAATCAGAAGTGCATAGAAGAAATATGTGAATCTTCTTTGTCAAATAGACATAATTACTGGGATAAACACTTTAATTCCTCTCGAGTTGTAATTTTCGAGAACTCAATTCTTTGGGATTGCGAGTCTGAGTGCAAATATCGCTGCATGTGGGATACTGTTTCTGCACTTGAAAAAGATGGTTGGCCTGTCCCTCAATTTAATGGAAAGTGGCCGTTCATTCGTCTCTGTGGTATACAAGAACCAGCATCTGCCATATTTTCCTTCCTAAACTTTATGTTTAATTGTCACATGTTCAATCAGTTCTACAGATATGTTCCATACTATACTCCTATGTATAAAACTTGGGTTATGCAAATTATCTTTTCTATGAACGCATGGGTTTGGTCAACAATATTTCACACAAGGGACACATCGTTTACTGAAAAAATGGATTATTTTAGTGCACTTGCATTCGTTATTGCATCTGTTATGGTTCTACATCGGAGAATTTTCAATCCAAATCGACTNTTTACTATCCTGTNTTCCGCTCTTTTATTAGCCTTTTTTGTGAACCACGTAAATTACATGACTTTCGTTAATTTTGATTATGGCTACAACTTAACTGTCAACA] [+] EMBL AW017333 [GGATCGAAACTGTTCAGCCCGCCTCATTTCATAAAATAGGAGATCAGACTCTTGTGTTTCATGAATGCAATCAGAAGTGCATAGAAGAAATATGTGAATCTTCTTTGTCAAATAGACATAATTACTGGGATAAACACTTTAATTCCTCTCGAGTTGTAATTTTCGAGAACTCAATTCTTTGGGATTGCGAGTCTGAGTGCAAATATCGCTGCATGTGGGATACTGTTTCTGCACTTGAAAAAGATGGTTGGCCTGTCCCTCAATTTAATGGAAAGTGGCCGTTCATTCGTCTCTGTGGTATACAAGAACCAGCATCTGCCATATTTTCCTTCCTAAACTTTATGTTTAATTGTCACATGTTCAATCAGTTCTACAGATATGTTCCATACTATACTCCTATGTATAAAACTTGGGTTATGCAAATTATCTTTTCTATGAACGCATGGGTTTGGTCAACAATATTTCACACAAGGGACACATCGTTTACTGAAAAAATGGATTATTTTAGTGCACTTGCATTCGTTATTGCATCTGTTATGGTTCTACATCGGAGAATTTTCAATCCAAATCGACTNTTTACTATCCTGTNTTCCGCTCTTTTATTAGCCTTTTTTGTGAACCACGTAAATTACATGACTTTCGTTAATTTTGATTATGGCTACAACTTAACTGTCAACA] [+] EMBL AI977531 [GGATCGAAACTGTTCAGCCCGCCTCATTTCATAAAATAGGAGATCAGACTCTTGTGTTTCATGAATGCAATCAGAAGTGCATAGAAGAAATATGTGAATCTTCTTTGTCAAATAGACATAATTACTGGGATAAACACTTTAATTCCTCTCGAGTTGTAATTTTCGAGAACTCAATTCTTTGGGATTGCGAGTCTGAGTGCAAATATCGCTGCATGTGGGATACTGTTTCTGCACTTGAAAAAGATGGTTGGCCTGTCCCTCAATTTAATGGAAAGTGGCCGTTCATTCGTCTCTGTGGTATACAAGAACCAGCATCTGCCATATTTTCCTTCCTAAACTTTATGTTTAATTGTCACATGTTCAATCAGTTCTACAGATATGTTCCATACTATACTCCTATGTATAAAACTTGGGTTATGCAAATTATCTTTTCTATGAACGCATGGGTTTGGTCAACAATATTTCACACAAGGGACACA ] consensusID : consensus_5140#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 615 fasta sequence [ATCGAAACTGTTCAGCCCGCCTCATTTCATAAAATAGTTTAGGTATCACATTTTAGTGAGCATTTCAGACTCGTCCTGATTGGTCACATTGCTGCTAATTGTCTCTCAATTTTTCCTATTACTGTTCCTCAAAAACGGTTTGGTGCTTCGTCATGTAGTTTGATTGAATTTGTACACAACTGTTATGTATTTTGATCTGATTCAAGCATTTCTTTATGGTCTGTTAGTTGTCATACCTCCTGTACTTTCATCTGTAGGAGATCAGACTCTTGTGTTTCATGAATGCAATCAGAAGTGCATAGAAGAAATATGTGAATCTTCTTTGTCAAATAGACATAATTACTGGGATAAACACTTTAATTCCTCTCGAGTTGTAATTTTCGAGAACTCAATTCTTTGGGATTGCGAGTCTGAGTGCAAATATCGCTGCATGTGGGATACTGTTTCTGCACTTGAAAAAGATGGTTGGCCTGTCCCTCAATTTAATGGAAAGTGGCCGTTCATTCGTCTCTGTGGTATACAAGAACCAGCATCTGCCATATTTTCCTTCCTAAACTNTATGTTTAATTGTCACATGTTCAATCAGTTCTACAGATATGTTCCATACTATACTCC] [+] EMBL AI976471 [ATCGAAACTGTTCAGCCCGCCTCATTTCATAAAATAGTTTAGGTATCACATTTTAGTGAGCATTTCAGACTCGTCCTGATTGGTCACATTGCTGCTAATTGTCTCTCAATTTTTCCTATTACTGTTCCTCAAAAACGGTTTGGTGCTTCGTCATGTAGTTTGATTGAATTTGTACACAACTGTTATGTATTTTGATCTGATTCAAGCATTTCTTTATGGTCTGTTAGTTGTCATACCTCCTGTACTTTCATCTGTAGGAGATCAGACTCTTGTGTTTCATGAATGCAATCAGAAGTGCATAGAAGAAATATGTGAATCTTCTTTGTCAAATAGACATAATTACTGGGATAAACACTTTAATTCCTCTCGAGTTGTAATTTTCGAGAACTCAATTCTTTGGGATTGCGAGTCTGAGTGCAAATATCGCTGCATGTGGGATACTGTTTCTGCACTTGAAAAAGATGGTTGGCCTGTCCCTCAATTTAATGGAAAGTGGCCGTTCATTCGTCTCTGTGGTATACAAGAACCAGCATCTGCCATATTTTCCTTCCTAAACTNTATGTTTAATTGTCACATGTTCAATCAGTTCTACAGATATGTTCCATACTATACTCC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5140#0 ------------------------------------------------------------ consensus_5140#1 ATCGAAACTGTTCAGCCCGCCTCATTTCATAAAATAGTTTAGGTATCACATTTTAGTGAG 60 consensus_5140#0 ------------------------------------------------------------ consensus_5140#1 CATTTCAGACTCGTCCTGATTGGTCACATTGCTGCTAATTGTCTCTCAATTTTTCCTATT 120 consensus_5140#0 ------------------------------------------------------------ consensus_5140#1 ACTGTTCCTCAAAAACGGTTTGGTGCTTCGTCATGTAGTTTGATTGAATTTGTACACAAC 180 consensus_5140#0 -------------------------------------GGATCGAAACTGTTCAGCCCGCC 23 consensus_5140#1 TGTTATGTATTTTGATCTGATTCAAGCATTTCTTTATGGTCTGTTAGTTGTCATACCTCC 240 ** * * * *** ** ** consensus_5140#0 T-CATTTCATAAAATAGGAGATCAGACTCTTGTGTTTCATGAATGCAATCAGAAGTGCAT 82 consensus_5140#1 TGTACTTTCATCTGTAGGAGATCAGACTCTTGTGTTTCATGAATGCAATCAGAAGTGCAT 300 * * ** ********************************************** consensus_5140#0 AGAAGAAATATGTGAATCTTCTTTGTCAAATAGACATAATTACTGGGATAAACACTTTAA 142 consensus_5140#1 AGAAGAAATATGTGAATCTTCTTTGTCAAATAGACATAATTACTGGGATAAACACTTTAA 360 ************************************************************ consensus_5140#0 TTCCTCTCGAGTTGTAATTTTCGAGAACTCAATTCTTTGGGATTGCGAGTCTGAGTGCAA 202 consensus_5140#1 TTCCTCTCGAGTTGTAATTTTCGAGAACTCAATTCTTTGGGATTGCGAGTCTGAGTGCAA 420 ************************************************************ consensus_5140#0 ATATCGCTGCATGTGGGATACTGTTTCTGCACTTGAAAAAGATGGTTGGCCTGTCCCTCA 262 consensus_5140#1 ATATCGCTGCATGTGGGATACTGTTTCTGCACTTGAAAAAGATGGTTGGCCTGTCCCTCA 480 ************************************************************ consensus_5140#0 ATTTAATGGAAAGTGGCCGTTCATTCGTCTCTGTGGTATACAAGAACCAGCATCTGCCAT 322 consensus_5140#1 ATTTAATGGAAAGTGGCCGTTCATTCGTCTCTGTGGTATACAAGAACCAGCATCTGCCAT 540 ************************************************************ consensus_5140#0 ATTTTCCTTCCTAAACTTTATGTTTAATTGTCACATGTTCAATCAGTTCTACAGATATGT 382 consensus_5140#1 ATTTTCCTTCCTAAACTNTATGTTTAATTGTCACATGTTCAATCAGTTCTACAGATATGT 600 ***************** ****************************************** consensus_5140#0 TCCATACTATACTCCTATGTATAAAACTTGGGTTATGCAAATTATCTTTTCTATGAACGC 442 consensus_5140#1 TCCATACTATACTCC--------------------------------------------- 615 *************** consensus_5140#0 ATGGGTTTGGTCAACAATATTTCACACAAGGGACACATCGTTTACTGAAAAAATGGATTA 502 consensus_5140#1 ------------------------------------------------------------ consensus_5140#0 TTTTAGTGCACTTGCATTCGTTATTGCATCTGTTATGGTTCTACATCGGAGAATTTTCAA 562 consensus_5140#1 ------------------------------------------------------------ consensus_5140#0 TCCAAATCGACTNTTTACTATCCTGTNTTCCGCTCTTTTATTAGCCTTTTTTGTGAACCA 622 consensus_5140#1 ------------------------------------------------------------ consensus_5140#0 CGTAAATTACATGACTTTCGTTAATTTTGATTATGGCTACAACTTAACTGTCAACA 678 consensus_5140#1 -------------------------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||