cluster # 5140

These datas are free for academic use only, please contact me for any other use.

Schistosoma mansoni
cluster # 5140 cluster # 5140 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5140#0 length = 678 sequences # 2

consensus_5140#1 length = 615 sequences # 1

consensusID : consensus_5140#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 678
fasta sequence

                              [GGATCGAAACTGTTCAGCCCGCCTCATTTCATAAAATAGGAGATCAGACTCTTGTGTTTCATGAATGCAATCAGAAGTGCATAGAAGAAATATGTGAATCTTCTTTGTCAAATAGACATAATTACTGGGATAAACACTTTAATTCCTCTCGAGTTGTAATTTTCGAGAACTCAATTCTTTGGGATTGCGAGTCTGAGTGCAAATATCGCTGCATGTGGGATACTGTTTCTGCACTTGAAAAAGATGGTTGGCCTGTCCCTCAATTTAATGGAAAGTGGCCGTTCATTCGTCTCTGTGGTATACAAGAACCAGCATCTGCCATATTTTCCTTCCTAAACTTTATGTTTAATTGTCACATGTTCAATCAGTTCTACAGATATGTTCCATACTATACTCCTATGTATAAAACTTGGGTTATGCAAATTATCTTTTCTATGAACGCATGGGTTTGGTCAACAATATTTCACACAAGGGACACATCGTTTACTGAAAAAATGGATTATTTTAGTGCACTTGCATTCGTTATTGCATCTGTTATGGTTCTACATCGGAGAATTTTCAATCCAAATCGACTNTTTACTATCCTGTNTTCCGCTCTTTTATTAGCCTTTTTTGTGAACCACGTAAATTACATGACTTTCGTTAATTTTGATTATGGCTACAACTTAACTGTCAACA]

[+] EMBL AW017333             [GGATCGAAACTGTTCAGCCCGCCTCATTTCATAAAATAGGAGATCAGACTCTTGTGTTTCATGAATGCAATCAGAAGTGCATAGAAGAAATATGTGAATCTTCTTTGTCAAATAGACATAATTACTGGGATAAACACTTTAATTCCTCTCGAGTTGTAATTTTCGAGAACTCAATTCTTTGGGATTGCGAGTCTGAGTGCAAATATCGCTGCATGTGGGATACTGTTTCTGCACTTGAAAAAGATGGTTGGCCTGTCCCTCAATTTAATGGAAAGTGGCCGTTCATTCGTCTCTGTGGTATACAAGAACCAGCATCTGCCATATTTTCCTTCCTAAACTTTATGTTTAATTGTCACATGTTCAATCAGTTCTACAGATATGTTCCATACTATACTCCTATGTATAAAACTTGGGTTATGCAAATTATCTTTTCTATGAACGCATGGGTTTGGTCAACAATATTTCACACAAGGGACACATCGTTTACTGAAAAAATGGATTATTTTAGTGCACTTGCATTCGTTATTGCATCTGTTATGGTTCTACATCGGAGAATTTTCAATCCAAATCGACTNTTTACTATCCTGTNTTCCGCTCTTTTATTAGCCTTTTTTGTGAACCACGTAAATTACATGACTTTCGTTAATTTTGATTATGGCTACAACTTAACTGTCAACA]
[+] EMBL AI977531             [GGATCGAAACTGTTCAGCCCGCCTCATTTCATAAAATAGGAGATCAGACTCTTGTGTTTCATGAATGCAATCAGAAGTGCATAGAAGAAATATGTGAATCTTCTTTGTCAAATAGACATAATTACTGGGATAAACACTTTAATTCCTCTCGAGTTGTAATTTTCGAGAACTCAATTCTTTGGGATTGCGAGTCTGAGTGCAAATATCGCTGCATGTGGGATACTGTTTCTGCACTTGAAAAAGATGGTTGGCCTGTCCCTCAATTTAATGGAAAGTGGCCGTTCATTCGTCTCTGTGGTATACAAGAACCAGCATCTGCCATATTTTCCTTCCTAAACTTTATGTTTAATTGTCACATGTTCAATCAGTTCTACAGATATGTTCCATACTATACTCCTATGTATAAAACTTGGGTTATGCAAATTATCTTTTCTATGAACGCATGGGTTTGGTCAACAATATTTCACACAAGGGACACA                                                                                                                                                                                                       ]




>consensus_5140#0
GGATCGAAACTGTTCAGCCCGCCTCATTTCATAAAATAGGAGATCAGACTCTTGTGTTTC
ATGAATGCAATCAGAAGTGCATAGAAGAAATATGTGAATCTTCTTTGTCAAATAGACATA
ATTACTGGGATAAACACTTTAATTCCTCTCGAGTTGTAATTTTCGAGAACTCAATTCTTT
GGGATTGCGAGTCTGAGTGCAAATATCGCTGCATGTGGGATACTGTTTCTGCACTTGAAA
AAGATGGTTGGCCTGTCCCTCAATTTAATGGAAAGTGGCCGTTCATTCGTCTCTGTGGTA
TACAAGAACCAGCATCTGCCATATTTTCCTTCCTAAACTTTATGTTTAATTGTCACATGT
TCAATCAGTTCTACAGATATGTTCCATACTATACTCCTATGTATAAAACTTGGGTTATGC
AAATTATCTTTTCTATGAACGCATGGGTTTGGTCAACAATATTTCACACAAGGGACACAT
CGTTTACTGAAAAAATGGATTATTTTAGTGCACTTGCATTCGTTATTGCATCTGTTATGG
TTCTACATCGGAGAATTTTCAATCCAAATCGACTNTTTACTATCCTGTNTTCCGCTCTTT
TATTAGCCTTTTTTGTGAACCACGTAAATTACATGACTTTCGTTAATTTTGATTATGGCT
ACAACTTAACTGTCAACA

consensusID : consensus_5140#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 615
fasta sequence

                              [ATCGAAACTGTTCAGCCCGCCTCATTTCATAAAATAGTTTAGGTATCACATTTTAGTGAGCATTTCAGACTCGTCCTGATTGGTCACATTGCTGCTAATTGTCTCTCAATTTTTCCTATTACTGTTCCTCAAAAACGGTTTGGTGCTTCGTCATGTAGTTTGATTGAATTTGTACACAACTGTTATGTATTTTGATCTGATTCAAGCATTTCTTTATGGTCTGTTAGTTGTCATACCTCCTGTACTTTCATCTGTAGGAGATCAGACTCTTGTGTTTCATGAATGCAATCAGAAGTGCATAGAAGAAATATGTGAATCTTCTTTGTCAAATAGACATAATTACTGGGATAAACACTTTAATTCCTCTCGAGTTGTAATTTTCGAGAACTCAATTCTTTGGGATTGCGAGTCTGAGTGCAAATATCGCTGCATGTGGGATACTGTTTCTGCACTTGAAAAAGATGGTTGGCCTGTCCCTCAATTTAATGGAAAGTGGCCGTTCATTCGTCTCTGTGGTATACAAGAACCAGCATCTGCCATATTTTCCTTCCTAAACTNTATGTTTAATTGTCACATGTTCAATCAGTTCTACAGATATGTTCCATACTATACTCC]

[+] EMBL AI976471             [ATCGAAACTGTTCAGCCCGCCTCATTTCATAAAATAGTTTAGGTATCACATTTTAGTGAGCATTTCAGACTCGTCCTGATTGGTCACATTGCTGCTAATTGTCTCTCAATTTTTCCTATTACTGTTCCTCAAAAACGGTTTGGTGCTTCGTCATGTAGTTTGATTGAATTTGTACACAACTGTTATGTATTTTGATCTGATTCAAGCATTTCTTTATGGTCTGTTAGTTGTCATACCTCCTGTACTTTCATCTGTAGGAGATCAGACTCTTGTGTTTCATGAATGCAATCAGAAGTGCATAGAAGAAATATGTGAATCTTCTTTGTCAAATAGACATAATTACTGGGATAAACACTTTAATTCCTCTCGAGTTGTAATTTTCGAGAACTCAATTCTTTGGGATTGCGAGTCTGAGTGCAAATATCGCTGCATGTGGGATACTGTTTCTGCACTTGAAAAAGATGGTTGGCCTGTCCCTCAATTTAATGGAAAGTGGCCGTTCATTCGTCTCTGTGGTATACAAGAACCAGCATCTGCCATATTTTCCTTCCTAAACTNTATGTTTAATTGTCACATGTTCAATCAGTTCTACAGATATGTTCCATACTATACTCC]




>consensus_5140#1
ATCGAAACTGTTCAGCCCGCCTCATTTCATAAAATAGTTTAGGTATCACATTTTAGTGAG
CATTTCAGACTCGTCCTGATTGGTCACATTGCTGCTAATTGTCTCTCAATTTTTCCTATT
ACTGTTCCTCAAAAACGGTTTGGTGCTTCGTCATGTAGTTTGATTGAATTTGTACACAAC
TGTTATGTATTTTGATCTGATTCAAGCATTTCTTTATGGTCTGTTAGTTGTCATACCTCC
TGTACTTTCATCTGTAGGAGATCAGACTCTTGTGTTTCATGAATGCAATCAGAAGTGCAT
AGAAGAAATATGTGAATCTTCTTTGTCAAATAGACATAATTACTGGGATAAACACTTTAA
TTCCTCTCGAGTTGTAATTTTCGAGAACTCAATTCTTTGGGATTGCGAGTCTGAGTGCAA
ATATCGCTGCATGTGGGATACTGTTTCTGCACTTGAAAAAGATGGTTGGCCTGTCCCTCA
ATTTAATGGAAAGTGGCCGTTCATTCGTCTCTGTGGTATACAAGAACCAGCATCTGCCAT
ATTTTCCTTCCTAAACTNTATGTTTAATTGTCACATGTTCAATCAGTTCTACAGATATGT
TCCATACTATACTCC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5140#0      ------------------------------------------------------------
consensus_5140#1      ATCGAAACTGTTCAGCCCGCCTCATTTCATAAAATAGTTTAGGTATCACATTTTAGTGAG 60
                                                                                  

consensus_5140#0      ------------------------------------------------------------
consensus_5140#1      CATTTCAGACTCGTCCTGATTGGTCACATTGCTGCTAATTGTCTCTCAATTTTTCCTATT 120
                                                                                  

consensus_5140#0      ------------------------------------------------------------
consensus_5140#1      ACTGTTCCTCAAAAACGGTTTGGTGCTTCGTCATGTAGTTTGATTGAATTTGTACACAAC 180
                                                                                  

consensus_5140#0      -------------------------------------GGATCGAAACTGTTCAGCCCGCC 23
consensus_5140#1      TGTTATGTATTTTGATCTGATTCAAGCATTTCTTTATGGTCTGTTAGTTGTCATACCTCC 240
                                                           **   *  * *  ***  ** **

consensus_5140#0      T-CATTTCATAAAATAGGAGATCAGACTCTTGTGTTTCATGAATGCAATCAGAAGTGCAT 82
consensus_5140#1      TGTACTTTCATCTGTAGGAGATCAGACTCTTGTGTTTCATGAATGCAATCAGAAGTGCAT 300
                      *  * **       **********************************************

consensus_5140#0      AGAAGAAATATGTGAATCTTCTTTGTCAAATAGACATAATTACTGGGATAAACACTTTAA 142
consensus_5140#1      AGAAGAAATATGTGAATCTTCTTTGTCAAATAGACATAATTACTGGGATAAACACTTTAA 360
                      ************************************************************

consensus_5140#0      TTCCTCTCGAGTTGTAATTTTCGAGAACTCAATTCTTTGGGATTGCGAGTCTGAGTGCAA 202
consensus_5140#1      TTCCTCTCGAGTTGTAATTTTCGAGAACTCAATTCTTTGGGATTGCGAGTCTGAGTGCAA 420
                      ************************************************************

consensus_5140#0      ATATCGCTGCATGTGGGATACTGTTTCTGCACTTGAAAAAGATGGTTGGCCTGTCCCTCA 262
consensus_5140#1      ATATCGCTGCATGTGGGATACTGTTTCTGCACTTGAAAAAGATGGTTGGCCTGTCCCTCA 480
                      ************************************************************

consensus_5140#0      ATTTAATGGAAAGTGGCCGTTCATTCGTCTCTGTGGTATACAAGAACCAGCATCTGCCAT 322
consensus_5140#1      ATTTAATGGAAAGTGGCCGTTCATTCGTCTCTGTGGTATACAAGAACCAGCATCTGCCAT 540
                      ************************************************************

consensus_5140#0      ATTTTCCTTCCTAAACTTTATGTTTAATTGTCACATGTTCAATCAGTTCTACAGATATGT 382
consensus_5140#1      ATTTTCCTTCCTAAACTNTATGTTTAATTGTCACATGTTCAATCAGTTCTACAGATATGT 600
                      ***************** ******************************************

consensus_5140#0      TCCATACTATACTCCTATGTATAAAACTTGGGTTATGCAAATTATCTTTTCTATGAACGC 442
consensus_5140#1      TCCATACTATACTCC--------------------------------------------- 615
                      ***************                                             

consensus_5140#0      ATGGGTTTGGTCAACAATATTTCACACAAGGGACACATCGTTTACTGAAAAAATGGATTA 502
consensus_5140#1      ------------------------------------------------------------
                                                                                  

consensus_5140#0      TTTTAGTGCACTTGCATTCGTTATTGCATCTGTTATGGTTCTACATCGGAGAATTTTCAA 562
consensus_5140#1      ------------------------------------------------------------
                                                                                  

consensus_5140#0      TCCAAATCGACTNTTTACTATCCTGTNTTCCGCTCTTTTATTAGCCTTTTTTGTGAACCA 622
consensus_5140#1      ------------------------------------------------------------
                                                                                  

consensus_5140#0      CGTAAATTACATGACTTTCGTTAATTTTGATTATGGCTACAACTTAACTGTCAACA 678
consensus_5140#1      --------------------------------------------------------