cluster # 5143

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Schistosoma mansoni
cluster # 5143 cluster # 5143 Sequences # 3 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5143#0 length = 455 sequences # 1

consensus_5143#1 length = 375 sequences # 1
consensus_5143#2 length = 310 sequences # 1

consensusID : consensus_5143#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 455
fasta sequence

                              [CAACGTAGTAATTTTGCAGCCATTTCAACACTTAAAGATAAAAAAGTTCGAGCTGAATTGCATTTTATTTCTGCTCTACTAGATCGAGGAAATCGAGTTTACATGATTGATGGAGGTTTTGAAGCATTTAGAAGTCTTCCAGATGCTCGTGACTTCATTGATCGAAATATACCACTTTTTATTAATTATATAAATACTGATGATAGTTCTTGTTCTGATGCTGCATCACCTTCATTAAGTGATCATTCGGAAGCTTCATCAATTGTATCACGTGTATTCAATGATAAAGTAATTTCTATGAATGATGATATTTCTTGTTATAAATTAGATAATTTTGAATCCAACGATACAGAAAAACTTATTTCTTGTTTAAAGGATTGTTCCCGTGATGAAACATTAGTTGTACGAATTAAACAAACACCATTAAGAGTAAATGAAATACAACAAAATAATGA]

[+] EMBL CD112122             [CAACGTAGTAATTTTGCAGCCATTTCAACACTTAAAGATAAAAAAGTTCGAGCTGAATTGCATTTTATTTCTGCTCTACTAGATCGAGGAAATCGAGTTTACATGATTGATGGAGGTTTTGAAGCATTTAGAAGTCTTCCAGATGCTCGTGACTTCATTGATCGAAATATACCACTTTTTATTAATTATATAAATACTGATGATAGTTCTTGTTCTGATGCTGCATCACCTTCATTAAGTGATCATTCGGAAGCTTCATCAATTGTATCACGTGTATTCAATGATAAAGTAATTTCTATGAATGATGATATTTCTTGTTATAAATTAGATAATTTTGAATCCAACGATACAGAAAAACTTATTTCTTGTTTAAAGGATTGTTCCCGTGATGAAACATTAGTTGTACGAATTAAACAAACACCATTAAGAGTAAATGAAATACAACAAAATAATGA]




>consensus_5143#0
CAACGTAGTAATTTTGCAGCCATTTCAACACTTAAAGATAAAAAAGTTCGAGCTGAATTG
CATTTTATTTCTGCTCTACTAGATCGAGGAAATCGAGTTTACATGATTGATGGAGGTTTT
GAAGCATTTAGAAGTCTTCCAGATGCTCGTGACTTCATTGATCGAAATATACCACTTTTT
ATTAATTATATAAATACTGATGATAGTTCTTGTTCTGATGCTGCATCACCTTCATTAAGT
GATCATTCGGAAGCTTCATCAATTGTATCACGTGTATTCAATGATAAAGTAATTTCTATG
AATGATGATATTTCTTGTTATAAATTAGATAATTTTGAATCCAACGATACAGAAAAACTT
ATTTCTTGTTTAAAGGATTGTTCCCGTGATGAAACATTAGTTGTACGAATTAAACAAACA
CCATTAAGAGTAAATGAAATACAACAAAATAATGA

consensusID : consensus_5143#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 375
fasta sequence

                              [GTAATTTTGCAGCCATTTCAACACTTAAAGATAAAAAAAGTTCGAGCTGAATTGCATTTTATTTCTGCTCTACTAGATCGAGGAAATCGAGTTTACATGATTGATGGAGGTTTTGAAGCATTTAGAAGTCTTCCAGATGCTCGTGACTTCATTGATCGAAATATACCACTTTTTATTAATTATATAAATACTGATGATAGTTCTTGTTCTGATGCTGCATCACCTTCATTAAGTGATCATTCGGAAGCTTCATCAATTGTATCACGTGTATTCAATGATAAAGTAATTTCTATGAATGTTACTTTTAGATGATATTTCTTGTTATAAATTAGATAATTTTGAATCCAACGATACAGAAAAACTTATTTCTTGTTT]

[-] EMBL CD137828             [GTAATTTTGCAGCCATTTCAACACTTAAAGATAAAAAAAGTTCGAGCTGAATTGCATTTTATTTCTGCTCTACTAGATCGAGGAAATCGAGTTTACATGATTGATGGAGGTTTTGAAGCATTTAGAAGTCTTCCAGATGCTCGTGACTTCATTGATCGAAATATACCACTTTTTATTAATTATATAAATACTGATGATAGTTCTTGTTCTGATGCTGCATCACCTTCATTAAGTGATCATTCGGAAGCTTCATCAATTGTATCACGTGTATTCAATGATAAAGTAATTTCTATGAATGTTACTTTTAGATGATATTTCTTGTTATAAATTAGATAATTTTGAATCCAACGATACAGAAAAACTTATTTCTTGTTT]




>consensus_5143#1
GTAATTTTGCAGCCATTTCAACACTTAAAGATAAAAAAAGTTCGAGCTGAATTGCATTTT
ATTTCTGCTCTACTAGATCGAGGAAATCGAGTTTACATGATTGATGGAGGTTTTGAAGCA
TTTAGAAGTCTTCCAGATGCTCGTGACTTCATTGATCGAAATATACCACTTTTTATTAAT
TATATAAATACTGATGATAGTTCTTGTTCTGATGCTGCATCACCTTCATTAAGTGATCAT
TCGGAAGCTTCATCAATTGTATCACGTGTATTCAATGATAAAGTAATTTCTATGAATGTT
ACTTTTAGATGATATTTCTTGTTATAAATTAGATAATTTTGAATCCAACGATACAGAAAA
ACTTATTTCTTGTTT

consensusID : consensus_5143#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 310
fasta sequence

                              [TAGGTTCGCAGGTATATGCACATATTGTATCCGATTTAATTTTCTGTTTGTCATAGGCAATGTATCTGTCACATTAATGGTATGTGTTACATTTAATTGTCTAATCAAATCAACATCTTGCGAGTCACGTGCATTACCTAAATATAAAAATGGGAAAATTTGTGATATACTCGCGCTTAATACATCATCATTATTTTGTTGTGTTTCATTTACTCTTAATGGGGTGTGTTTAATTCGCACAACTAATGTTTCATCACGGGAACACTCCTTTAAACACGAAATAAGTTTTTCCCTGCGAACCTATGAGGGT]

[+] EMBL CD060799             [TAGGTTCGCAGGTATATGCACATATTGTATCCGATTTAATTTTCTGTTTGTCATAGGCAATGTATCTGTCACATTAATGGTATGTGTTACATTTAATTGTCTAATCAAATCAACATCTTGCGAGTCACGTGCATTACCTAAATATAAAAATGGGAAAATTTGTGATATACTCGCGCTTAATACATCATCATTATTTTGTTGTGTTTCATTTACTCTTAATGGGGTGTGTTTAATTCGCACAACTAATGTTTCATCACGGGAACACTCCTTTAAACACGAAATAAGTTTTTCCCTGCGAACCTATGAGGGT]




>consensus_5143#2
TAGGTTCGCAGGTATATGCACATATTGTATCCGATTTAATTTTCTGTTTGTCATAGGCAA
TGTATCTGTCACATTAATGGTATGTGTTACATTTAATTGTCTAATCAAATCAACATCTTG
CGAGTCACGTGCATTACCTAAATATAAAAATGGGAAAATTTGTGATATACTCGCGCTTAA
TACATCATCATTATTTTGTTGTGTTTCATTTACTCTTAATGGGGTGTGTTTAATTCGCAC
AACTAATGTTTCATCACGGGAACACTCCTTTAAACACGAAATAAGTTTTTCCCTGCGAAC
CTATGAGGGT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5143#0      CAACGTAGTAATTTTGCAGCCATTTCAACACTTAAAGATAAAAAA-GTTCGAGCTGAATT 59
consensus_5143#1      -------GTAATTTTGCAGCCATTTCAACACTTAAAGATAAAAAAAGTTCGAGCTGAATT 53
consensus_5143#2      --------------------------TAGGTTCGCAGGTATAT---GCACATATTGTATC 31
                                                 *   *   ** ** *    *  *    ** ** 

consensus_5143#0      GCATTTTATTTCTGCTCTACTAGATCGAGGAAATCGAGTTTACATGATTGATGGAGGTTT 119
consensus_5143#1      GCATTTTATTTCTGCTCTACTAGATCGAGGAAATCGAGTTTACATGATTGATGGAGGTTT 113
consensus_5143#2      CGATTTAATTT----TCTGTTTGTCATAGGCAAT-GTATCTGTCACATTAATGGTA--TG 84
                        **** ****    ***  * *    *** *** *  * *     *** ****    * 

consensus_5143#0      TGAAGCATTTAGAAGTCTTCCAGATGCTCGTGACTTCATTGATCGAAATATACCACTTTT 179
consensus_5143#1      TGAAGCATTTAGAAGTCTTCCAGATGCTCGTGACTTCATTGATCGAAATATACCACTTTT 173
consensus_5143#2      TGTTACATTTAATTGTCTAATCAAA--TCAACATCTTGCGAGTC-ACGTGCATTACCTAA 141
                      **   ******   ****     *   **   *  *      ** *  *  *  ** *  

consensus_5143#0      TATTAATTATATAAATACTGATGATAGTTCTTGTTCTGATGCTGCATCACCTTCATTAAG 239
consensus_5143#1      TATTAATTATATAAATACTGATGATAGTTCTTGTTCTGATGCTGCATCACCTTCATTAAG 233
consensus_5143#2      ATATAAAAATGGGAAAATTTGTGATA-TACTCGCGCT--TAATACATCATCATTATTTTG 198
                         ***  **   ** * *  ***** * ** *  **  *  * ***** * * ***  *

consensus_5143#0      TGATCATTCGGAAGCTTCATCAATTGTATCACGTGTATTCAATGATAAAGTAATTTCTAT 299
consensus_5143#1      TGATCATTCGGAAGCTTCATCAATTGTATCACGTGTATTCAATGATAAAGTAATTTCTAT 293
consensus_5143#2      TTGTGTTTCA-----TTTACTCTTAATGGGGTGTGTTTAATTCGCACAACTAATGTTTCA 253
                      *  *  ***      ** *    *  *     **** *     *   ** **** * *  

consensus_5143#0      GAATG----------ATGATATTTCTTGTTATAAATTAGATAATTTTGAATCCAACGATA 349
consensus_5143#1      GAATGTTACTTTTAGATGATATTTCTTGTTATAAATTAGATAATTTTGAATCCAACGATA 353
consensus_5143#2      TCACG----------GGAACACTCCTT--TAAACACGAAATAAGTTTTTCCCTGCGAACC 301
                        * *             * * * ***  ** * *  * **** ***    *     *  

consensus_5143#0      CAGAAAAACTTATTTCTTGTTTAAAGGATTGTTCCCGTGATGAAACATTAGTTGTACGAA 409
consensus_5143#1      CAGAAAAACTTATTTCTTGTTT-------------------------------------- 375
consensus_5143#2      TATGAGGGT--------------------------------------------------- 310
                       *  *                                                       

consensus_5143#0      TTAAACAAACACCATTAAGAGTAAATGAAATACAACAAAATAATGA 455
consensus_5143#1      ----------------------------------------------
consensus_5143#2      ----------------------------------------------