These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5143#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 455 fasta sequence [CAACGTAGTAATTTTGCAGCCATTTCAACACTTAAAGATAAAAAAGTTCGAGCTGAATTGCATTTTATTTCTGCTCTACTAGATCGAGGAAATCGAGTTTACATGATTGATGGAGGTTTTGAAGCATTTAGAAGTCTTCCAGATGCTCGTGACTTCATTGATCGAAATATACCACTTTTTATTAATTATATAAATACTGATGATAGTTCTTGTTCTGATGCTGCATCACCTTCATTAAGTGATCATTCGGAAGCTTCATCAATTGTATCACGTGTATTCAATGATAAAGTAATTTCTATGAATGATGATATTTCTTGTTATAAATTAGATAATTTTGAATCCAACGATACAGAAAAACTTATTTCTTGTTTAAAGGATTGTTCCCGTGATGAAACATTAGTTGTACGAATTAAACAAACACCATTAAGAGTAAATGAAATACAACAAAATAATGA] [+] EMBL CD112122 [CAACGTAGTAATTTTGCAGCCATTTCAACACTTAAAGATAAAAAAGTTCGAGCTGAATTGCATTTTATTTCTGCTCTACTAGATCGAGGAAATCGAGTTTACATGATTGATGGAGGTTTTGAAGCATTTAGAAGTCTTCCAGATGCTCGTGACTTCATTGATCGAAATATACCACTTTTTATTAATTATATAAATACTGATGATAGTTCTTGTTCTGATGCTGCATCACCTTCATTAAGTGATCATTCGGAAGCTTCATCAATTGTATCACGTGTATTCAATGATAAAGTAATTTCTATGAATGATGATATTTCTTGTTATAAATTAGATAATTTTGAATCCAACGATACAGAAAAACTTATTTCTTGTTTAAAGGATTGTTCCCGTGATGAAACATTAGTTGTACGAATTAAACAAACACCATTAAGAGTAAATGAAATACAACAAAATAATGA] consensusID : consensus_5143#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 375 fasta sequence [GTAATTTTGCAGCCATTTCAACACTTAAAGATAAAAAAAGTTCGAGCTGAATTGCATTTTATTTCTGCTCTACTAGATCGAGGAAATCGAGTTTACATGATTGATGGAGGTTTTGAAGCATTTAGAAGTCTTCCAGATGCTCGTGACTTCATTGATCGAAATATACCACTTTTTATTAATTATATAAATACTGATGATAGTTCTTGTTCTGATGCTGCATCACCTTCATTAAGTGATCATTCGGAAGCTTCATCAATTGTATCACGTGTATTCAATGATAAAGTAATTTCTATGAATGTTACTTTTAGATGATATTTCTTGTTATAAATTAGATAATTTTGAATCCAACGATACAGAAAAACTTATTTCTTGTTT] [-] EMBL CD137828 [GTAATTTTGCAGCCATTTCAACACTTAAAGATAAAAAAAGTTCGAGCTGAATTGCATTTTATTTCTGCTCTACTAGATCGAGGAAATCGAGTTTACATGATTGATGGAGGTTTTGAAGCATTTAGAAGTCTTCCAGATGCTCGTGACTTCATTGATCGAAATATACCACTTTTTATTAATTATATAAATACTGATGATAGTTCTTGTTCTGATGCTGCATCACCTTCATTAAGTGATCATTCGGAAGCTTCATCAATTGTATCACGTGTATTCAATGATAAAGTAATTTCTATGAATGTTACTTTTAGATGATATTTCTTGTTATAAATTAGATAATTTTGAATCCAACGATACAGAAAAACTTATTTCTTGTTT] consensusID : consensus_5143#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 310 fasta sequence [TAGGTTCGCAGGTATATGCACATATTGTATCCGATTTAATTTTCTGTTTGTCATAGGCAATGTATCTGTCACATTAATGGTATGTGTTACATTTAATTGTCTAATCAAATCAACATCTTGCGAGTCACGTGCATTACCTAAATATAAAAATGGGAAAATTTGTGATATACTCGCGCTTAATACATCATCATTATTTTGTTGTGTTTCATTTACTCTTAATGGGGTGTGTTTAATTCGCACAACTAATGTTTCATCACGGGAACACTCCTTTAAACACGAAATAAGTTTTTCCCTGCGAACCTATGAGGGT] [+] EMBL CD060799 [TAGGTTCGCAGGTATATGCACATATTGTATCCGATTTAATTTTCTGTTTGTCATAGGCAATGTATCTGTCACATTAATGGTATGTGTTACATTTAATTGTCTAATCAAATCAACATCTTGCGAGTCACGTGCATTACCTAAATATAAAAATGGGAAAATTTGTGATATACTCGCGCTTAATACATCATCATTATTTTGTTGTGTTTCATTTACTCTTAATGGGGTGTGTTTAATTCGCACAACTAATGTTTCATCACGGGAACACTCCTTTAAACACGAAATAAGTTTTTCCCTGCGAACCTATGAGGGT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5143#0 CAACGTAGTAATTTTGCAGCCATTTCAACACTTAAAGATAAAAAA-GTTCGAGCTGAATT 59 consensus_5143#1 -------GTAATTTTGCAGCCATTTCAACACTTAAAGATAAAAAAAGTTCGAGCTGAATT 53 consensus_5143#2 --------------------------TAGGTTCGCAGGTATAT---GCACATATTGTATC 31 * * ** ** * * * ** ** consensus_5143#0 GCATTTTATTTCTGCTCTACTAGATCGAGGAAATCGAGTTTACATGATTGATGGAGGTTT 119 consensus_5143#1 GCATTTTATTTCTGCTCTACTAGATCGAGGAAATCGAGTTTACATGATTGATGGAGGTTT 113 consensus_5143#2 CGATTTAATTT----TCTGTTTGTCATAGGCAAT-GTATCTGTCACATTAATGGTA--TG 84 **** **** *** * * *** *** * * * *** **** * consensus_5143#0 TGAAGCATTTAGAAGTCTTCCAGATGCTCGTGACTTCATTGATCGAAATATACCACTTTT 179 consensus_5143#1 TGAAGCATTTAGAAGTCTTCCAGATGCTCGTGACTTCATTGATCGAAATATACCACTTTT 173 consensus_5143#2 TGTTACATTTAATTGTCTAATCAAA--TCAACATCTTGCGAGTC-ACGTGCATTACCTAA 141 ** ****** **** * ** * * ** * * * ** * consensus_5143#0 TATTAATTATATAAATACTGATGATAGTTCTTGTTCTGATGCTGCATCACCTTCATTAAG 239 consensus_5143#1 TATTAATTATATAAATACTGATGATAGTTCTTGTTCTGATGCTGCATCACCTTCATTAAG 233 consensus_5143#2 ATATAAAAATGGGAAAATTTGTGATA-TACTCGCGCT--TAATACATCATCATTATTTTG 198 *** ** ** * * ***** * ** * ** * * ***** * * *** * consensus_5143#0 TGATCATTCGGAAGCTTCATCAATTGTATCACGTGTATTCAATGATAAAGTAATTTCTAT 299 consensus_5143#1 TGATCATTCGGAAGCTTCATCAATTGTATCACGTGTATTCAATGATAAAGTAATTTCTAT 293 consensus_5143#2 TTGTGTTTCA-----TTTACTCTTAATGGGGTGTGTTTAATTCGCACAACTAATGTTTCA 253 * * *** ** * * * **** * * ** **** * * consensus_5143#0 GAATG----------ATGATATTTCTTGTTATAAATTAGATAATTTTGAATCCAACGATA 349 consensus_5143#1 GAATGTTACTTTTAGATGATATTTCTTGTTATAAATTAGATAATTTTGAATCCAACGATA 353 consensus_5143#2 TCACG----------GGAACACTCCTT--TAAACACGAAATAAGTTTTTCCCTGCGAACC 301 * * * * * *** ** * * * **** *** * * consensus_5143#0 CAGAAAAACTTATTTCTTGTTTAAAGGATTGTTCCCGTGATGAAACATTAGTTGTACGAA 409 consensus_5143#1 CAGAAAAACTTATTTCTTGTTT-------------------------------------- 375 consensus_5143#2 TATGAGGGT--------------------------------------------------- 310 * * consensus_5143#0 TTAAACAAACACCATTAAGAGTAAATGAAATACAACAAAATAATGA 455 consensus_5143#1 ---------------------------------------------- consensus_5143#2 ---------------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||