These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5145#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 423 fasta sequence [TGTGGAAATGATGAACCACCACCGATGGAGACAGTATCATGATAAATGCTAGTTGAATGCTCACCAATATGTTCCTGAAAGTCCGGGAAATTATATTTGTGAGTAATAAGGTACTTTGAGAGGGTGATTTATGGAATGAAATAGCTCAATAATTGCAGCTAATAAATAGGCAAATGGGAAATTAGGGCATCAAGGGGAAAGAAACAACGCAAGACCTAATGTAAACATGTACCGACCAAAGCTCCAACGCTCGACACTATTACAGTGAAGAGAAATTAGCACAGAAGCTAAATATCTATTTCGTTTTACCAGGCTGCTTTAAATGCGCCGTTCAAGTTGACTTATTTCTGGTGATCGATACAACGTATAAACTGGAATGATTAACGACTAGTGCCAGAAATGATTAAAGTGCTAAGCTGAACA] [+] EMBL CD169261 [TGTGGAAATGATGAACCACCACCGATGGAGACAGTATCATGATAAATGCTAGTTGAATGCTCACCAATATGTTCCTGAAAGTCCGGGAAATTATATTTGTGAGTAATAAGGTACTTTGAGAGGGTGATTTATGGAATGAAATAGCTCAATAATTGCAGCTAATAAATAGGCAAATGGGAAATTAGGGCATCAAGGGGAAAGAAACAACGCAAGACCTAATGTAAACATGTACCGACCAAAGCTCCAACGCTCGACACTATTACAGTGAAGAGAAATTAGCACAGAAGCTAAATATCTATTTCGTTTTACCAGGCTGCTTTAAATGCGCCGTTCAAGTTGACTTATTTCTGGTGATCGATACAACGTATAAACTGGAATGATTAACGACTAGTGCCAGAAATGATTAAAGTGCTAAGCTGAACA] [+] EMBL CD169328 [TGTGGAAATGATGAACCACCACCGATGGAGACAGTATCATGATAAATGCTAGTTGAATGCTCACCAATATGTTCCTGAAAGTCCGGGAAATTATATTTGTGAGTAATAAGGTACTTTGAGAGGGTGATTTATGGAATGAAATAGCTCAATAATTGCAGCTAATAAATAGGCAAATGGGAAATTAGGGCATCAAGGGGAAAGAAACAACGCAAGACCTAATGTAAACATGTACCGACCAAAGCTCCAACGCTCGACACTATTACAGTGAAGAGAAATTAGCACAGAAGCTAAATATCTATTTCGTTTTACCAGGCTGCTTTAAATGCGCCGTTCAAGTTGACTTATTTCTGGTGATCGATACAACGTATAAACTGGAATGATTAACGACTAGTGCCAGAAATGATTAAAGTGCTAAGCTGAACA] consensusID : consensus_5145#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 301 fasta sequence [GCCAGATTCGTCCGAGGGGACATATTGGTGAGCATTCAACTAGCATTTATCATGATACTGTCTCCATCGGTGGTGGTTCATCATTTCCACAGTTCCCTTCCCAAGTGCGAGGATGGTCAGATGTGACCGATCCTAGTTCCGAGTCATTAGCTGTTGAAATTTCTGGAGCGATGAGTGATAAAGACCGTGTCTTATTCAAAATTCATACAAAGACTACATTGCCTGATTTTAAACAAAGTGAATGTGATGTACAACGAATGCACGAAGAATTCGTCTGGCTTCTTGATCGTTTAGTTGAAAA] [+] EMBL CD077887 [GCCAGATTCGTCCGAGGGGACATATTGGTGAGCATTCAACTAGCATTTATCATGATACTGTCTCCATCGGTGGTGGTTCATCATTTCCACAGTTCCCTTCCCAAGTGCGAGGATGGTCAGATGTGACCGATCCTAGTTCCGAGTCATTAGCTGTTGAAATTTCTGGAGCGATGAGTGATAAAGACCGTGTCTTATTCAAAATTCATACAAAGACTACATTGCCTGATTTTAAACAAAGTGAATGTGATGTACAACGAATGCACGAAGAATTCGTCTGGCTTCTTGATCGTTTAGTTGAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5145#0 TGTGGAAATGATGAACCACCACCGATGGAGACAGTATCATGATAAATGCTAGTTGAATGC 60 consensus_5145#1 --------------GCCAGATTCGTCCGAGGGGACATATTGGTGAGCATTCAACTAGCAT 46 *** ** *** ** ** * * * * consensus_5145#0 TCACCAATATGTTCCTGAAAGTCCGGGAAATTATATTTGTGAGTAATAAGGTACTTTGAG 120 consensus_5145#1 TTATCATGATACTGTCTCCATCGGTGGTGGTTCATCATTTCCACAGTTCCCTTCCC-AAG 105 * * ** ** * * ** ** * * * * * * ** consensus_5145#0 AGGGTGATTTATGGAATGAAATAGCTCAATAATTGCAGCTAATAAATAGGCAAATGGGAA 180 consensus_5145#1 TGCGAGGATGGTCAGATGTGACCGATCC-TAGTTCCGAGTCATTAGCTGTT------GAA 158 * * * * * *** * * ** ** ** * * ** * * *** consensus_5145#0 ATTAGGGCATCAAGGGGAAAGAAACAACGCAAGACCTAATGTAAACATGTACCGACCAAA 240 consensus_5145#1 ATTTCTGGAGCGATGAGTGATAAAGACCGTG---TCTTATTCAAA---ATTCATACAAAG 212 *** * * * * * * * *** * ** ** ** *** * * ** ** consensus_5145#0 GCTCCAACGCTCGACACTAT-TACAGTGAAGAGAAATTAGCACAGAAGCTAAATATCTAT 299 consensus_5145#1 ACTACATTGCCTGATTTTAAACAAAGTGAATGTGATGTACAACGAATGCACGAAG---AA 269 ** ** ** ** ** * ****** * ** ** * ** * * consensus_5145#0 TTCGTTTTACCAGGCTGCTTTAAATGCGCCGTTCAAGTTGACTTATTTCTGGTGATCGAT 359 consensus_5145#1 TTCGTCT-----GGCTTCTT-GATCGTTTAGTTGAAAA---------------------- 301 ***** * **** *** * * *** ** consensus_5145#0 ACAACGTATAAACTGGAATGATTAACGACTAGTGCCAGAAATGATTAAAGTGCTAAGCTG 419 consensus_5145#1 ------------------------------------------------------------ consensus_5145#0 AACA 423 consensus_5145#1 ---- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||