cluster # 5145

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Schistosoma mansoni
cluster # 5145 cluster # 5145 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5145#0 length = 423 sequences # 2

consensus_5145#1 length = 301 sequences # 1

consensusID : consensus_5145#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 423
fasta sequence

                              [TGTGGAAATGATGAACCACCACCGATGGAGACAGTATCATGATAAATGCTAGTTGAATGCTCACCAATATGTTCCTGAAAGTCCGGGAAATTATATTTGTGAGTAATAAGGTACTTTGAGAGGGTGATTTATGGAATGAAATAGCTCAATAATTGCAGCTAATAAATAGGCAAATGGGAAATTAGGGCATCAAGGGGAAAGAAACAACGCAAGACCTAATGTAAACATGTACCGACCAAAGCTCCAACGCTCGACACTATTACAGTGAAGAGAAATTAGCACAGAAGCTAAATATCTATTTCGTTTTACCAGGCTGCTTTAAATGCGCCGTTCAAGTTGACTTATTTCTGGTGATCGATACAACGTATAAACTGGAATGATTAACGACTAGTGCCAGAAATGATTAAAGTGCTAAGCTGAACA]

[+] EMBL CD169261             [TGTGGAAATGATGAACCACCACCGATGGAGACAGTATCATGATAAATGCTAGTTGAATGCTCACCAATATGTTCCTGAAAGTCCGGGAAATTATATTTGTGAGTAATAAGGTACTTTGAGAGGGTGATTTATGGAATGAAATAGCTCAATAATTGCAGCTAATAAATAGGCAAATGGGAAATTAGGGCATCAAGGGGAAAGAAACAACGCAAGACCTAATGTAAACATGTACCGACCAAAGCTCCAACGCTCGACACTATTACAGTGAAGAGAAATTAGCACAGAAGCTAAATATCTATTTCGTTTTACCAGGCTGCTTTAAATGCGCCGTTCAAGTTGACTTATTTCTGGTGATCGATACAACGTATAAACTGGAATGATTAACGACTAGTGCCAGAAATGATTAAAGTGCTAAGCTGAACA]
[+] EMBL CD169328             [TGTGGAAATGATGAACCACCACCGATGGAGACAGTATCATGATAAATGCTAGTTGAATGCTCACCAATATGTTCCTGAAAGTCCGGGAAATTATATTTGTGAGTAATAAGGTACTTTGAGAGGGTGATTTATGGAATGAAATAGCTCAATAATTGCAGCTAATAAATAGGCAAATGGGAAATTAGGGCATCAAGGGGAAAGAAACAACGCAAGACCTAATGTAAACATGTACCGACCAAAGCTCCAACGCTCGACACTATTACAGTGAAGAGAAATTAGCACAGAAGCTAAATATCTATTTCGTTTTACCAGGCTGCTTTAAATGCGCCGTTCAAGTTGACTTATTTCTGGTGATCGATACAACGTATAAACTGGAATGATTAACGACTAGTGCCAGAAATGATTAAAGTGCTAAGCTGAACA]




>consensus_5145#0
TGTGGAAATGATGAACCACCACCGATGGAGACAGTATCATGATAAATGCTAGTTGAATGC
TCACCAATATGTTCCTGAAAGTCCGGGAAATTATATTTGTGAGTAATAAGGTACTTTGAG
AGGGTGATTTATGGAATGAAATAGCTCAATAATTGCAGCTAATAAATAGGCAAATGGGAA
ATTAGGGCATCAAGGGGAAAGAAACAACGCAAGACCTAATGTAAACATGTACCGACCAAA
GCTCCAACGCTCGACACTATTACAGTGAAGAGAAATTAGCACAGAAGCTAAATATCTATT
TCGTTTTACCAGGCTGCTTTAAATGCGCCGTTCAAGTTGACTTATTTCTGGTGATCGATA
CAACGTATAAACTGGAATGATTAACGACTAGTGCCAGAAATGATTAAAGTGCTAAGCTGA
ACA

consensusID : consensus_5145#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 301
fasta sequence

                              [GCCAGATTCGTCCGAGGGGACATATTGGTGAGCATTCAACTAGCATTTATCATGATACTGTCTCCATCGGTGGTGGTTCATCATTTCCACAGTTCCCTTCCCAAGTGCGAGGATGGTCAGATGTGACCGATCCTAGTTCCGAGTCATTAGCTGTTGAAATTTCTGGAGCGATGAGTGATAAAGACCGTGTCTTATTCAAAATTCATACAAAGACTACATTGCCTGATTTTAAACAAAGTGAATGTGATGTACAACGAATGCACGAAGAATTCGTCTGGCTTCTTGATCGTTTAGTTGAAAA]

[+] EMBL CD077887             [GCCAGATTCGTCCGAGGGGACATATTGGTGAGCATTCAACTAGCATTTATCATGATACTGTCTCCATCGGTGGTGGTTCATCATTTCCACAGTTCCCTTCCCAAGTGCGAGGATGGTCAGATGTGACCGATCCTAGTTCCGAGTCATTAGCTGTTGAAATTTCTGGAGCGATGAGTGATAAAGACCGTGTCTTATTCAAAATTCATACAAAGACTACATTGCCTGATTTTAAACAAAGTGAATGTGATGTACAACGAATGCACGAAGAATTCGTCTGGCTTCTTGATCGTTTAGTTGAAAA]




>consensus_5145#1
GCCAGATTCGTCCGAGGGGACATATTGGTGAGCATTCAACTAGCATTTATCATGATACTG
TCTCCATCGGTGGTGGTTCATCATTTCCACAGTTCCCTTCCCAAGTGCGAGGATGGTCAG
ATGTGACCGATCCTAGTTCCGAGTCATTAGCTGTTGAAATTTCTGGAGCGATGAGTGATA
AAGACCGTGTCTTATTCAAAATTCATACAAAGACTACATTGCCTGATTTTAAACAAAGTG
AATGTGATGTACAACGAATGCACGAAGAATTCGTCTGGCTTCTTGATCGTTTAGTTGAAA
A

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5145#0      TGTGGAAATGATGAACCACCACCGATGGAGACAGTATCATGATAAATGCTAGTTGAATGC 60
consensus_5145#1      --------------GCCAGATTCGTCCGAGGGGACATATTGGTGAGCATTCAACTAGCAT 46
                                     ***    **   ***     **  ** * *    *     *    

consensus_5145#0      TCACCAATATGTTCCTGAAAGTCCGGGAAATTATATTTGTGAGTAATAAGGTACTTTGAG 120
consensus_5145#1      TTATCATGATACTGTCTCCATCGGTGGTGGTTCATCATTTCCACAGTTCCCTTCCC-AAG 105
                      * * **  **  *      *     **   **     * *    * *    * *    **

consensus_5145#0      AGGGTGATTTATGGAATGAAATAGCTCAATAATTGCAGCTAATAAATAGGCAAATGGGAA 180
consensus_5145#1      TGCGAGGATGGTCAGATGTGACCGATCC-TAGTTCCGAGTCATTAGCTGTT------GAA 158
                       * * *  *  *   ***  *  * **  ** ** *   * ** *   *        ***

consensus_5145#0      ATTAGGGCATCAAGGGGAAAGAAACAACGCAAGACCTAATGTAAACATGTACCGACCAAA 240
consensus_5145#1      ATTTCTGGAGCGATGAGTGATAAAGACCGTG---TCTTATTCAAA---ATTCATACAAAG 212
                      ***   * * * * * *  * *** * **      ** **  ***    * *  ** ** 

consensus_5145#0      GCTCCAACGCTCGACACTAT-TACAGTGAAGAGAAATTAGCACAGAAGCTAAATATCTAT 299
consensus_5145#1      ACTACATTGCCTGATTTTAAACAAAGTGAATGTGATGTACAACGAATGCACGAAG---AA 269
                       ** **  **  **   **   * ******    *  **  **  * **   *     * 

consensus_5145#0      TTCGTTTTACCAGGCTGCTTTAAATGCGCCGTTCAAGTTGACTTATTTCTGGTGATCGAT 359
consensus_5145#1      TTCGTCT-----GGCTTCTT-GATCGTTTAGTTGAAAA---------------------- 301
                      ***** *     **** ***  *  *    *** **                        

consensus_5145#0      ACAACGTATAAACTGGAATGATTAACGACTAGTGCCAGAAATGATTAAAGTGCTAAGCTG 419
consensus_5145#1      ------------------------------------------------------------
                                                                                  

consensus_5145#0      AACA 423
consensus_5145#1      ----