cluster # 515

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Schistosoma mansoni
cluster # 515 cluster # 515 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_515#0 length = 297 sequences # 1

consensus_515#1 length = 205 sequences # 1

consensusID : consensus_515#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 297
fasta sequence

                              [ATTAGAAGGCTAATAATATGACAACTTGAACATCAACATATACATTTTGTAGATTTAAACACCAGAATTCAGAAACGTTTTCGGCACTTTCAATCTCAGAAAATAGTGATTTATATCGAGCATCATTTAAGTTTTTTTTACACTATTCGTTTTCTGTTTCTTCTTTATGTTGCATCAGAAATGTTGCCAAAGCTTCGATCGGATTAGGCGGTCTTTCTTTGGCTATCATATTCAGACCTTTTAGAAGAACTGGAACCACAGTTTTATCTAAATAAGCCCTAGTATCTGTGCTTTTTG]

[+] EMBL CD074851             [ATTAGAAGGCTAATAATATGACAACTTGAACATCAACATATACATTTTGTAGATTTAAACACCAGAATTCAGAAACGTTTTCGGCACTTTCAATCTCAGAAAATAGTGATTTATATCGAGCATCATTTAAGTTTTTTTTACACTATTCGTTTTCTGTTTCTTCTTTATGTTGCATCAGAAATGTTGCCAAAGCTTCGATCGGATTAGGCGGTCTTTCTTTGGCTATCATATTCAGACCTTTTAGAAGAACTGGAACCACAGTTTTATCTAAATAAGCCCTAGTATCTGTGCTTTTTG]




>consensus_515#0
ATTAGAAGGCTAATAATATGACAACTTGAACATCAACATATACATTTTGTAGATTTAAAC
ACCAGAATTCAGAAACGTTTTCGGCACTTTCAATCTCAGAAAATAGTGATTTATATCGAG
CATCATTTAAGTTTTTTTTACACTATTCGTTTTCTGTTTCTTCTTTATGTTGCATCAGAA
ATGTTGCCAAAGCTTCGATCGGATTAGGCGGTCTTTCTTTGGCTATCATATTCAGACCTT
TTAGAAGAACTGGAACCACAGTTTTATCTAAATAAGCCCTAGTATCTGTGCTTTTTG

consensusID : consensus_515#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 205
fasta sequence

                              [TTAGAAGGCTAATAATATGACAACTTGAACATCAACATATACATTTTGTAGATTTAAACACCAGAATTCTCAGAAAATAGTGATTTATATCGAGCATCATTTAAGTTTTTTTTACACTATTCGTTTTCTGTTTCTTCTTTATGTTGCATCAGAAATGTTGCCAAAGCTTCGATCGGATTAGGCGGTCTTTCTTTGGACTGGAACC]

[-] EMBL CD081024             [TTAGAAGGCTAATAATATGACAACTTGAACATCAACATATACATTTTGTAGATTTAAACACCAGAATTCTCAGAAAATAGTGATTTATATCGAGCATCATTTAAGTTTTTTTTACACTATTCGTTTTCTGTTTCTTCTTTATGTTGCATCAGAAATGTTGCCAAAGCTTCGATCGGATTAGGCGGTCTTTCTTTGGACTGGAACC]




>consensus_515#1
TTAGAAGGCTAATAATATGACAACTTGAACATCAACATATACATTTTGTAGATTTAAACA
CCAGAATTCTCAGAAAATAGTGATTTATATCGAGCATCATTTAAGTTTTTTTTACACTAT
TCGTTTTCTGTTTCTTCTTTATGTTGCATCAGAAATGTTGCCAAAGCTTCGATCGGATTA
GGCGGTCTTTCTTTGGACTGGAACC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_515#0      ATTAGAAGGCTAATAATATGACAACTTGAACATCAACATATACATTTTGTAGATTTAAAC 60
consensus_515#1      -TTAGAAGGCTAATAATATGACAACTTGAACATCAACATATACATTTTGTAGATTTAAAC 59
                      ***********************************************************

consensus_515#0      ACCAGAATTCAGAAACGTTTTCGGCACTTTCAATCTCAGAAAATAGTGATTTATATCGAG 120
consensus_515#1      ACCAGAATTC-------------------------TCAGAAAATAGTGATTTATATCGAG 94
                     **********                         *************************

consensus_515#0      CATCATTTAAGTTTTTTTTACACTATTCGTTTTCTGTTTCTTCTTTATGTTGCATCAGAA 180
consensus_515#1      CATCATTTAAGTTTTTTTTACACTATTCGTTTTCTGTTTCTTCTTTATGTTGCATCAGAA 154
                     ************************************************************

consensus_515#0      ATGTTGCCAAAGCTTCGATCGGATTAGGCGGTCTTTCTTTGGCTATCATATTCAGACCTT 240
consensus_515#1      ATGTTGCCAAAGCTTCGATCGGATTAGGCGGTCTTTCTTTGG--ACTGGAACC------- 205
                     ******************************************  *    *  *       

consensus_515#0      TTAGAAGAACTGGAACCACAGTTTTATCTAAATAAGCCCTAGTATCTGTGCTTTTTG 297
consensus_515#1      ---------------------------------------------------------