cluster # 5151

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Schistosoma mansoni
cluster # 5151 cluster # 5151 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5151#0 length = 565 sequences # 2

consensus_5151#1 length = 289 sequences # 1

consensusID : consensus_5151#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 565
fasta sequence

                              [GGACGACACTGTTTTATCAAATTCACCACCGCAACCAGTCAGATCTAGAAAACAAAATATAAGAGAGCTTCGTGAAGAATTTGAAGATTATCCTGAACTGTATGGTATACGTAGATCTGCACGAAGTCGCAAAGAGCCATTACGTTTCAAAGCATCAGAGAAAGATACAACTGATGCACTTTTTCGAGAAAAGAGAAGAAATCGTTTTCCTAGCAGTTCAGATAGTAATAATGTAACAGATAGTGAAACAGACGATTGGAATGATAATATATCAACACGACATCGTACTGTAAGAACACGAGGAAATCGTGTCAATTACAAAAGTGCTTTTGTAGATGACAGTTTTGACGAATCTAACGATGAACCATCGGAACGATCTAGTTCGAGTATATTTAAACCAATCAATCAACGAACTTCATATGGCACTGTACCAATACTAAATCAACAAACGTGTTTTCAAAAGCCAAGAGGTCCTTTGGTCCGAAAACCTTATGCACCAGTCTTGGCAAGCAGAAATTCGAAGTCATTCATAAAATCAGATGACAATAATGTAGACCAAATTGGC]

[-] EMBL CD088976             [GGACGACACTGTTTTATCAAATTCACCACCGCAACCAGTCAGATCTAGAAAACAAAATATAAGAGAGCTTCGTGAAGAATTTGAAGATTATCCTGAACTGTATGGTATACGTAGATCTGCACGAAGTCGCAAAGAGCCATTACGTTTCAAAGCATCAGAGAAAGATACAACTGATGCACTTTTTCGAGAAAAGAGAAGAAATCGTTTTCCTAGCAGTTCAGATAGTAATAATGTAACAGATAGTGAAACAGACGATTGGAATGATAATATATCAACACGACATCGTACTGTAAGAACACGAGGAAATCGTGTCAATTACAAAAGTGCTTTTGTAGATGACAGTTTTGACGAATCTAACGATGAACCATCGGAACGATCTAGTTCGAGTATATTTAAACCAATCAATCAACGAACTTCATATGGCACTGTACCAATACT                                                                                                                               ]
[+] EMBL CD112878             [        CTGTTTTATCAAATTCACCACCGCAACCAGTCAGATCTAGAAAACAAAATATAAGAGAGCTTCGTGAAGAATTAGAAGATTATCCTGAACTGTATGGTATACGTAGATCTGCACGAAGTCGCAAAGAGCCATTACGTTTCAAAGCATCAGAGAAAGATACAACTGATGCACTTTTTCGAGAAAAGAGAAGAAATCGTTTTCCTAGCAGTTCAGATAGTAATAATGTAACAGATAGTGAAACAGACGATTGGAATGATAATATATCAACACGACATCGTACTGTAAGAACACGAGGAAATCGTGTCAATTACAAAAGTGCTTTTGTAGATGACAGTTTTGATGAATCTAACGATGAACCATCGGAACGATCTAGTTCGAGTATATTTAAACCAATCAATCAACGAACTTCATATGGCACTGTACCAATACTAAATCAACAAACGTGTTTTCAAAAGCCAAGAGGTCCTTTGGTCCGAAAACCTTATGCACCAGTCTTGGCAAGCAGAAATTCGAAGTCATTCATAAAATCAGATGACAATAATGTAGACCAAATTGGC]




>consensus_5151#0
GGACGACACTGTTTTATCAAATTCACCACCGCAACCAGTCAGATCTAGAAAACAAAATAT
AAGAGAGCTTCGTGAAGAATTTGAAGATTATCCTGAACTGTATGGTATACGTAGATCTGC
ACGAAGTCGCAAAGAGCCATTACGTTTCAAAGCATCAGAGAAAGATACAACTGATGCACT
TTTTCGAGAAAAGAGAAGAAATCGTTTTCCTAGCAGTTCAGATAGTAATAATGTAACAGA
TAGTGAAACAGACGATTGGAATGATAATATATCAACACGACATCGTACTGTAAGAACACG
AGGAAATCGTGTCAATTACAAAAGTGCTTTTGTAGATGACAGTTTTGACGAATCTAACGA
TGAACCATCGGAACGATCTAGTTCGAGTATATTTAAACCAATCAATCAACGAACTTCATA
TGGCACTGTACCAATACTAAATCAACAAACGTGTTTTCAAAAGCCAAGAGGTCCTTTGGT
CCGAAAACCTTATGCACCAGTCTTGGCAAGCAGAAATTCGAAGTCATTCATAAAATCAGA
TGACAATAATGTAGACCAAATTGGC

consensusID : consensus_5151#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 289
fasta sequence

                              [CGGTTAACTTCACCACTTACACCATCTTCATCCTCTTCTGAATATTGTTCTTTTACGCCAATTTGGTCTACATTATTGTCATCTGATTTTATGAATGACTTCGAATTTCTAAAACGGTAAAAAGGGGGAAAACAAAACAATTTTAAGATGACGAAAATTACCAGTTTAATAAAAAAAAAACGAAATACTATTTATCCAAACCACTTACAGAATGACTGTAGCTAAATAACCAATAAAAACTTGGAGGTACCAGGACAGCTGTTTCGCCCTAGCATATGATTTTTCATCA]

[+] EMBL CD085635             [CGGTTAACTTCACCACTTACACCATCTTCATCCTCTTCTGAATATTGTTCTTTTACGCCAATTTGGTCTACATTATTGTCATCTGATTTTATGAATGACTTCGAATTTCTAAAACGGTAAAAAGGGGGAAAACAAAACAATTTTAAGATGACGAAAATTACCAGTTTAATAAAAAAAAAACGAAATACTATTTATCCAAACCACTTACAGAATGACTGTAGCTAAATAACCAATAAAAACTTGGAGGTACCAGGACAGCTGTTTCGCCCTAGCATATGATTTTTCATCA]




>consensus_5151#1
CGGTTAACTTCACCACTTACACCATCTTCATCCTCTTCTGAATATTGTTCTTTTACGCCA
ATTTGGTCTACATTATTGTCATCTGATTTTATGAATGACTTCGAATTTCTAAAACGGTAA
AAAGGGGGAAAACAAAACAATTTTAAGATGACGAAAATTACCAGTTTAATAAAAAAAAAA
CGAAATACTATTTATCCAAACCACTTACAGAATGACTGTAGCTAAATAACCAATAAAAAC
TTGGAGGTACCAGGACAGCTGTTTCGCCCTAGCATATGATTTTTCATCA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5151#0      GGACGACACTGTTTTATCAAATTCACCACCGCAACCAGTCAGATCTAGAAAACAAAATAT 60
consensus_5151#1      -----------------------------------CGGTTAACTTCACCACTTACACCAT 25
                                                         * ** *  *  *  *   * *  **

consensus_5151#0      AAGAGAGCTTCGTGAAGAATTTGAAGATTATCCTGAACTGTATGGTATACGTAGATCT-G 119
consensus_5151#1      CTTCATCCTCTTCTGAATATT----GTTCTTTTACGCCAATTTGGTCTACATTATTGTCA 81
                             **      *  ***    * *  *      *  * **** *** *   * *  

consensus_5151#0      CACGAAGTCGCAAAGAGCCATTACGTTTCAAAGCATCAGAGAAAGATACAACTGATGCAC 179
consensus_5151#1      TCTGATTTTATGAATGACTTCGAATTTCTAAAACGGTAAAAAGGGGGAAAACAAA---AC 138
                         **  *    **   *    *  **  *** *   * * *  *  * ***  *   **

consensus_5151#0      TTTTTCGAGAAAAGAGAAGAAATCGTTTTCCTAGCAGTTCAGATAGTAATAATGTAACAG 239
consensus_5151#1      AATTTTAAGATGACGAAAATTACCAGTTTAATA-------AAAAAAAAACGAAATACTAT 191
                        ***  ***  *   **   * *  ***  **       * * *  **  *  **  * 

consensus_5151#0      ATAGTGAAACAGACGATTGGAATGATAATATATCAACACGACATCGTACTGTAAGAACAC 299
consensus_5151#1      TTATCCAAACC-ACTTACAGAATGAC--TGTAGCTAAATAAC------CAATAAAAACTT 242
                       **   ****  **     ******   * ** * * *  **      *  *** ***  

consensus_5151#0      GAGGAAATCGTGTCAATTACAAAAGTGCTTTTGTAGATGACAGTTTTGACGAATCTAACG 359
consensus_5151#1      GGAGGTACCAGGACAGCTGT---TTCGCCCTAGCATATGAT--TTTTCATCA-------- 289
                      *  *  * *  * **  *        **  * * * ****   **** *  *        

consensus_5151#0      ATGAACCATCGGAACGATCTAGTTCGAGTATATTTAAACCAATCAATCAACGAACTTCAT 419
consensus_5151#1      ------------------------------------------------------------
                                                                                  

consensus_5151#0      ATGGCACTGTACCAATACTAAATCAACAAACGTGTTTTCAAAAGCCAAGAGGTCCTTTGG 479
consensus_5151#1      ------------------------------------------------------------
                                                                                  

consensus_5151#0      TCCGAAAACCTTATGCACCAGTCTTGGCAAGCAGAAATTCGAAGTCATTCATAAAATCAG 539
consensus_5151#1      ------------------------------------------------------------
                                                                                  

consensus_5151#0      ATGACAATAATGTAGACCAAATTGGC 565
consensus_5151#1      --------------------------