cluster # 5154

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Schistosoma mansoni
cluster # 5154 cluster # 5154 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5154#0 length = 722 sequences # 2

consensus_5154#1 length = 345 sequences # 1

consensusID : consensus_5154#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 722
fasta sequence

                              [ATTTGAATTCATCCAAGAAGTGTTAACAGTCTCAAAGGCCTTTAAAAATCGTATTCAACGTTTAACTCAACATAAATATGCATCAGAGGTTATAGATACGTTATATAATGATTATGCCACTGCATCACAACGTAGTGAAATGATGCAAGAGTTTTATGGGAATAGACATGCTCTTAGACTTGGTGAACATAAATTGTTTACACT-TGAAGATACATTAAAATTGCATCCAGACAAAAGTACTGTGATACTTAATAATCTTACAAGGATACTCATCAATTTAGTATCAAAGGGCCTTAACAAATACAGTATTGTTCAACACTTATTATTGGAGTATTTACGGAATGCAGCATCATTTTCCAAAGCATCATCAACACCTGTTAATGAGAAAGCTAGTATGAATACATCTCAACCAAGCGAAACAATTGTGCCATACATAATTAATGAACCAGTTGACTGTAAAGATGAGGATATTATTCCTAAATCATTTCATGATAATTTTACAACTTTGATTGAAAATTTAATCAATGGTCAAATAGTTCCAATGTTACATACTCGTGATGGTGTTCGTGCTGCTTTAAGAATACTTTGGATGTGTAGTCCTCAAAAACGTAAGATTTTAGTTAAAGGCTTAAAAACCTGTGTACAAAATATTGCGTTTAATGAACATGGACATCTTTTTATTATTGGATTAATCGATTCAGTGGATGATATTATATTATTAC]

[+] EMBL CD195811             [ATTTGAATTCATCCAAGAAGTGTTAACAGTCTCAAAGGCCTTTAAAAATCGTATTCAACGTTTAACTCAACATAAATATGCATCAGAGGTTATAGATACGTTATATAATGATTATGCCACTGCATCACAACGTAGTGAAATGATGCAAGAGTTTTATGGGAATAGACATGCTCTTAGACTTGGTGAACATAAATTGTTTACACT TGAAGATACATTAAAATTGCATCCAGACAAAAGTACTGTGATACTTAATAATCTTACAAGGATACTCATCAATTTAGTATCAAAGGGCCTTAACAAATACAGTATTGTTCAACACTTATTATTGGAGTATTTACGGAATGCAGCATCATTTTCCAAAGCATCATCAACACCTGTTAATGAGAAAG                                                                                                                                                                                                                                                                                                                                             ]
[+] EMBL CD115399             [                                                                                                              ATTATGCCACTGCATCACAACGTAGTGAAATGACGCAAGAGTTTTATGGGAATAGACATGCTCTTAGACTTGGTGAACATAAATTGTTTACACTNTGAAGATACATTAAAATTGCATCCAGACAAAAGTACTGTGATACTTAATAATCTTACAAGGATACTCATCAATTTAGTATCAAAGGGCCTTAACAAATACAGTATTGTTCAACACTTATTATTGGAGTATTTACGGAATGCAGCATCATTTTCCAAAGCATCATCAACACCTGTTAATGAGAAAGCTAGTATGAATACATCTCAACCAAGCGAAACAATTGTGCCATACATAATTAATGAACCAGTTGACTGTAAAGATGAGGATATTATTCCTAAATCATTTCATGATAATTTTACAACTTTGATTGAAAATTTAATCAATGGTCAAATAGTTCCAATGTTACATACTCGTGATGGTGTTCGTGCTGCTTTAAGAATACTTTGGATGTGTAGTCCTCAAAAACGTAAGATTTTAGTTAAAGGCTTAAAAACCTGTGTACAAAATATTGCGTTTAATGAACATGGACATCTTTTTATTATTGGATTAATCGATTCAGTGGATGATATTATATTATTAC]




>consensus_5154#0
ATTTGAATTCATCCAAGAAGTGTTAACAGTCTCAAAGGCCTTTAAAAATCGTATTCAACG
TTTAACTCAACATAAATATGCATCAGAGGTTATAGATACGTTATATAATGATTATGCCAC
TGCATCACAACGTAGTGAAATGATGCAAGAGTTTTATGGGAATAGACATGCTCTTAGACT
TGGTGAACATAAATTGTTTACACTTGAAGATACATTAAAATTGCATCCAGACAAAAGTAC
TGTGATACTTAATAATCTTACAAGGATACTCATCAATTTAGTATCAAAGGGCCTTAACAA
ATACAGTATTGTTCAACACTTATTATTGGAGTATTTACGGAATGCAGCATCATTTTCCAA
AGCATCATCAACACCTGTTAATGAGAAAGCTAGTATGAATACATCTCAACCAAGCGAAAC
AATTGTGCCATACATAATTAATGAACCAGTTGACTGTAAAGATGAGGATATTATTCCTAA
ATCATTTCATGATAATTTTACAACTTTGATTGAAAATTTAATCAATGGTCAAATAGTTCC
AATGTTACATACTCGTGATGGTGTTCGTGCTGCTTTAAGAATACTTTGGATGTGTAGTCC
TCAAAAACGTAAGATTTTAGTTAAAGGCTTAAAAACCTGTGTACAAAATATTGCGTTTAA
TGAACATGGACATCTTTTTATTATTGGATTAATCGATTCAGTGGATGATATTATATTATT
AC

consensusID : consensus_5154#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 345
fasta sequence

                              [ATTTGAGTTCATCCAAGAAGTGTTAACAGTCTCAAAGAAAGTCATACCTGATTTGTGCATGGCTCATGATACTTCAAGAATCTTGGAAGATTGTGTTAAATATGGTACAGAGTCACAACGTTGGCAAATTTTCAGTGAAGTTCACCCGAATCTGGTGATACTGGCTAAATCACGCTATGCAAAATTTGTTATATTAAAACTAATAAAGTACGGTGACAAACAACACATATTGGAGATGTTTAAGGCCTTTAAAAATCGTATTCAACGTTTAAACTCACATAAATATGCATCAGAAGTTATAGATACGTTATATAATGATTATGCCACTGCATCACAACGTAGTGA]

[+] EMBL CD195892             [ATTTGAGTTCATCCAAGAAGTGTTAACAGTCTCAAAGAAAGTCATACCTGATTTGTGCATGGCTCATGATACTTCAAGAATCTTGGAAGATTGTGTTAAATATGGTACAGAGTCACAACGTTGGCAAATTTTCAGTGAAGTTCACCCGAATCTGGTGATACTGGCTAAATCACGCTATGCAAAATTTGTTATATTAAAACTAATAAAGTACGGTGACAAACAACACATATTGGAGATGTTTAAGGCCTTTAAAAATCGTATTCAACGTTTAAACTCACATAAATATGCATCAGAAGTTATAGATACGTTATATAATGATTATGCCACTGCATCACAACGTAGTGA]




>consensus_5154#1
ATTTGAGTTCATCCAAGAAGTGTTAACAGTCTCAAAGAAAGTCATACCTGATTTGTGCAT
GGCTCATGATACTTCAAGAATCTTGGAAGATTGTGTTAAATATGGTACAGAGTCACAACG
TTGGCAAATTTTCAGTGAAGTTCACCCGAATCTGGTGATACTGGCTAAATCACGCTATGC
AAAATTTGTTATATTAAAACTAATAAAGTACGGTGACAAACAACACATATTGGAGATGTT
TAAGGCCTTTAAAAATCGTATTCAACGTTTAAACTCACATAAATATGCATCAGAAGTTAT
AGATACGTTATATAATGATTATGCCACTGCATCACAACGTAGTGA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5154#0      ATTTGAATTCATCCAAGAAGTGTTAACAGTCTCAAAGGCCTTTAAAAATCGTATTCAACG 60
consensus_5154#1      ATTTGAGTTCATCCAAGAAGTGTTAACAGTCTCAAAG-------AAAGTCATACCTGAT- 52
                      ****** ******************************       *** ** **    *  

consensus_5154#0      TTTAACTCAACATAAATATGCATCAGAGGTTATAGATACGTTATATAATGATTATGCCAC 120
consensus_5154#1      TTGTGCATGGC-TCATGATACTTCAAGAATCTTGGA-AGATTGTGT--TAAATATGGTAC 108
                      **   *    * * *  ** * ***    *  * ** *  ** * *  * * ****  **

consensus_5154#0      TGCATCACAACGTAGTGAAATGATGCAAGAGTTTTATGGGAAT--AGACATGCT--CTTA 176
consensus_5154#1      AGAGTCACAACGTTGGCAAATTTTCAGTGAAGTTCACCCGAATCTGGTGATACTGGCTAA 168
                       *  ********* *  ****  *    **  ** *   ****   *  ** **  ** *

consensus_5154#0      GACTTGGTGAACATAAATTGTTTACACTTGAAGATACATTAAAATTGCATCCAGACAAAA 236
consensus_5154#1      ATCACGCTATGCAAAATTTGTT---ATATTAAAACTAATAAAGTACGGTGACAAACAACA 225
                        *  * *   ** ** *****   *  * ** *   ** **    *    ** **** *

consensus_5154#0      -GTACTGT-GATACTTAATAATCTTACAAGG-ATACTCA----TCAATTTAGTATCAAAG 289
consensus_5154#1      CATATTGGAGATGTTTAAGGCCTTTAAAAATCGTATTCAACGTTTAAACTCACATAAATA 285
                        ** **  ***  ****     *** **    ** ***    * **  *   ** **  

consensus_5154#0      GGCCTTAACAAATACAGTATTGTTCAACACTTATTATTGGAGTATTTACGGAATGCAGCA 349
consensus_5154#1      TGCATCAGAAGTTATAGATACGTTATATAATGATTATGCCACTGCAT-CACAACGTAGTG 344
                       ** * *  *  ** **    ***  * * * *****   * *   * *  ** * **  

consensus_5154#0      TCATTTTCCAAAGCATCATCAACACCTGTTAATGAGAAAGCTAGTATGAATACATCTCAA 409
consensus_5154#1      A----------------------------------------------------------- 345
                                                                                  

consensus_5154#0      CCAAGCGAAACAATTGTGCCATACATAATTAATGAACCAGTTGACTGTAAAGATGAGGAT 469
consensus_5154#1      ------------------------------------------------------------
                                                                                  

consensus_5154#0      ATTATTCCTAAATCATTTCATGATAATTTTACAACTTTGATTGAAAATTTAATCAATGGT 529
consensus_5154#1      ------------------------------------------------------------
                                                                                  

consensus_5154#0      CAAATAGTTCCAATGTTACATACTCGTGATGGTGTTCGTGCTGCTTTAAGAATACTTTGG 589
consensus_5154#1      ------------------------------------------------------------
                                                                                  

consensus_5154#0      ATGTGTAGTCCTCAAAAACGTAAGATTTTAGTTAAAGGCTTAAAAACCTGTGTACAAAAT 649
consensus_5154#1      ------------------------------------------------------------
                                                                                  

consensus_5154#0      ATTGCGTTTAATGAACATGGACATCTTTTTATTATTGGATTAATCGATTCAGTGGATGAT 709
consensus_5154#1      ------------------------------------------------------------
                                                                                  

consensus_5154#0      ATTATATTATTAC 722
consensus_5154#1      -------------