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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5161#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 614 fasta sequence
[GATCCTACTGTTGTATCCTGTTTACAACAAGTTTTAAAGGACTTTCTGTCCTCAAAATCAGGATGTGAAATAGATTTACAAATATCTAATTCTCCTTTGAATCATAGCAAATCTTTAACTCCTGCATCGAATACATCACATTCTACTGGTGTTGGTTTGTCATCATTATTACGTGGTTCTATTGGTCGTGTACAATCAACTCCTGTTCACACCACAATAGAAACTGCGAAAATTTCCACTTCACTCGAAAATTCTTCCTCTATCTTAAATATAACTTGTCCATCACCAACTGAATCAATGCTTAAGCAAGGTCTTCCACTTAAAGAACAAGATTTTACTCCAATTAAACGATTTGTATCAACAACCACTACTGACTGTGAACAATCTTTAAACAACAATACACCAAAAACTGTTACTTGTCCTTACACTCGAACCCTTCCTAATCGAAGTGCTTCGCGTACAGGTCTTTCACGAAAAACTCGTGTTCGTTCTAGTATCCCTGGATTAAAAAATTCGTCTATAACTGTTTCAGATAAATCTATTTCTCACGAAATAAAACAATCTGAGGTCGTTGATATTGCGAAGTCACCAACTCCTGATATTATTCACTCGCT]
[+] EMBL CD116628 [GATCCTACTGTTGTATCCTGTTTACAACAAGTTTTAAAGGACTTTCTGTCCTCAAAATCAGGATGTGAAATAGATTTACAAATATCTAATTCTCCTTTGAATCATAGCAAATCTTTAACTCCTGCATCGAATACATCACATTCTACTGGTGTTGGTTTGTCATCATTATTACGTGGTTCTATTGGTCGTGTACAATCAACTCCTGTTCACACCACAATAGAAACTGCGAAAATTTCCACTTCACTCGAAAATTCTTCCTCTATCTTAAATATAACTTGTCCATCACCAACTGAATCAATGCTTAAGCAAGGTCTTCCACTTAAAGAACAAGATTTTACTCCAATTAAACGATTTGTATCAACAACCACTACTGACTGTGAACAATCTTTAAACAACAATACACCAAAAACTGTTACTTGTCCTTACACTCGAACCCTTCCTAATCGAAGTGCTTCGCGTACAGGTCTTTCACGAAAAACTCGTGTTCGTTCTAGTATCCCTGGATTAAAAAATTCGTCTATAACTGTTTCAGATAAATCTATTTCTCACGAAATAAAACAATCTGAGGTCGTTGATATTGCGAAGTCACCAACTCCTGATATTATTCACTCGCT]
consensusID : consensus_5161#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 559 fasta sequence
[CGTAATAGTCATCAATATAAAAGCGCACCTAATAATTAGTTTTCGTATATACGACAGACTCATCAGATAAGGAAGTGTTTATTACTCGTAGTTTTGGTTTTCATTTGATTAAATTTTGTTACATTTTGTCGTTGATCAATTAGCTTAGATTATTTATTGTCACTGTTATTCACTAATAATCGTTGGAGTATTTTTCTCTTGAATTTTTAGTGTCCTTACACTCGAACCCTTCCTAATCGAAGTGCTTCGCGTACAGGTCTTTCACGAAAAACTCGTGTTCGTTCTAGTATCCCTGGATTAAAAAATTCGTCTATAACTGTTTCAGATAAATCTATTTCTCACGAAATAAAACAATCTGAGGTCGTTGATATTGCGAAGTCACCAACTCCTGATATTATTCACTCGCTACTTATTACTGAGGAACCATGTTTTACTCCTGAGCCTAAAGCTAAACGTCCTCGCAGTTCCCAACGTAGTAATCAATGTGATAATTCATTAGAACTTTGCAATAACACAGAGATTTTAGAATGTATTCAATCACCTAAAGATATTTTGAATA]
[+] EMBL CD115321 [CGTAATAGTCATCAATATAAAAGCGCACCTAATAATTAGTTTTCGTATATACGACAGACTCATCAGATAAGGAAGTGTTTATTACTCGTAGTTTTGGTTTTCATTTGATTAAATTTTGTTACATTTTGTCGTTGATCAATTAGCTTAGATTATTTATTGTCACTGTTATTCACTAATAATCGTTGGAGTATTTTTCTCTTGAATTTTTAGTGTCCTTACACTCGAACCCTTCCTAATCGAAGTGCTTCGCGTACAGGTCTTTCACGAAAAACTCGTGTTCGTTCTAGTATCCCTGGATTAAAAAATTCGTCTATAACTGTTTCAGATAAATCTATTTCTCACGAAATAAAACAATCTGAGGTCGTTGATATTGCGAAGTCACCAACTCCTGATATTATTCACTCGCTACTTATTACTGAGGAACCATGTTTTACTCCTGAGCCTAAAGCTAAACGTCCTCGCAGTTCCCAACGTAGTAATCAATGTGATAATTCATTAGAACTTTGCAATAACACAGAGATTTTAGAATGTATTCAATCACCTAAAGATATTTTGAATA]
[+] EMBL CD115585 [CGTAATAGTCATCAATATAAAAGCGCACCTAATAATTAGTTTTCGTATATACGACAGATTCATCAGATAAGGAAGTGTTTATTACTCGTAGTTTTGGTTTTCATTTGATTAAATTTTGTTACATTTTGTCGTTGATCAATTAGCTTAGATTATTTATTGTCACTGTTATTCACTAATAATCGTTGGAGTATTTTTCTCTTGAATTTTTAGTGTCCTTACACTCGAACCCTTCCTAATCGAAGTGCTTCGCGTACAGGTCTTTCACGAAAAACTCGTGTTCGTTCTAGTATCCCTGGATTAAAAAATTCGTCTATAACTGTTTCAGATAAATCTATTTCTCACGAAATAAAACAATCTGAGGTCGTTGATATTGCGAAGTCACCAACTCCTGATATTATTCACTCGCTACTTATTACTGAGGAACCATGTTTTACTCCTGAGCCTAAAGCTAAACGTCCTCGCAGTTCCCAACGTAGTAATCAATGTGATAATTCATTAGAACTTTGCAATAACAAAGAGATTTTAGAATGTATnttca ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5161#0 GATCCTACTGTTGTATCCTGTTTACAACAAGTTTTAAAGGACTTTCTGTCCTCAAAATCA 60
consensus_5161#1 ------------------------------------------------------------
consensus_5161#0 GGATGTGAAATAGATTTACAAATATCTAATTCTCCTTTGAATCATAGCAAATCTTTAACT 120
consensus_5161#1 ------------------------------------------------------------
consensus_5161#0 CCTGCATCGAATACATCACATTCTACTGGTGTTGGTTTGTCATCATTATTACGTGGTTCT 180
consensus_5161#1 ------------------------------------------------------------
consensus_5161#0 ATTGGTCGTGTACAATCAACTCCTGTTCACACCACAATAGAAACTGCGAAAATTTCCACT 240
consensus_5161#1 --------------------------------CGTAATAGTCATCAATATAAA----AGC 24
* ***** * * ** *
consensus_5161#0 TCACTCGAAAATTCTTCCTC-TATCTTAAATATAACTTGTCCATCACCAACTGAATCAAT 299
consensus_5161#1 GCACCTAATAATTAGTTTTCGTATATACGACA-GACTCATCAGATAAGGAAGTGTTTATT 83
*** * **** * ** *** * * * *** ** * * * * *
consensus_5161#0 GCTTA-AGCAAGGTCTTCCACTTAAAGAA------CAAGATTTTACT-CCAATTAAACGA 351
consensus_5161#1 ACTCGTAGTTTTGGTTTTCATTTGATTAAATTTTGTTACATTTTGTCGTTGATCAATTAG 143
** ** * ** ** ** * ** * ***** ** **
consensus_5161#0 TTTGTATCA---ACAACCACTACTGACTGTGAACAATCTTTAAACAACAATACACCAAAA 408
consensus_5161#1 CTTAGATTATTTATTGTCACTGTTATTCACTAATAATCGTTGGAGTATTTTTCTCTTGAA 203
** ** * * **** * ** **** ** * * * * * **
consensus_5161#0 ACTGTTACTTGTCCTTACACTCGAACCCTTCCTAATCGAAGTGCTTCGCGTACAGGTCTT 468
consensus_5161#1 --TTTTTAGTGTCCTTACACTCGAACCCTTCCTAATCGAAGTGCTTCGCGTACAGGTCTT 261
* ** ***************************************************
consensus_5161#0 TCACGAAAAACTCGTGTTCGTTCTAGTATCCCTGGATTAAAAAATTCGTCTATAACTGTT 528
consensus_5161#1 TCACGAAAAACTCGTGTTCGTTCTAGTATCCCTGGATTAAAAAATTCGTCTATAACTGTT 321
************************************************************
consensus_5161#0 TCAGATAAATCTATTTCTCACGAAATAAAACAATCTGAGGTCGTTGATATTGCGAAGTCA 588
consensus_5161#1 TCAGATAAATCTATTTCTCACGAAATAAAACAATCTGAGGTCGTTGATATTGCGAAGTCA 381
************************************************************
consensus_5161#0 CCAACTCCTGATATTATTCACTCGCT---------------------------------- 614
consensus_5161#1 CCAACTCCTGATATTATTCACTCGCTACTTATTACTGAGGAACCATGTTTTACTCCTGAG 441
**************************
consensus_5161#0 ------------------------------------------------------------
consensus_5161#1 CCTAAAGCTAAACGTCCTCGCAGTTCCCAACGTAGTAATCAATGTGATAATTCATTAGAA 501
consensus_5161#0 ----------------------------------------------------------
consensus_5161#1 CTTTGCAATAACACAGAGATTTTAGAATGTATTCAATCACCTAAAGATATTTTGAATA 559
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||