cluster # 5166

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Schistosoma mansoni
cluster # 5166 cluster # 5166 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5166#0 length = 465 sequences # 1

consensus_5166#1 length = 368 sequences # 2

consensusID : consensus_5166#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 465
fasta sequence

                              [GACAACAAAGCATTTACAAAACAATCAATTCATTTGAATATTGCCAACAACAACAACGACAAAAAATCACAAAACTATCGTATCAACGAAGGAGAACAGAGAGTGAGTTTAGCCTTGAACAGTGATATCTCTGCATATGACAAAGAGTAAACAATGAAAGACAAACAGACATACACAAAAAAATAGATATGATTTATTCAAAGAGACAGAAACAAAGACAAGATTAAAAGATAAAAACAATTAGGGGGAAAAATTAAGACAACAAAGCATTTACAAAACAATCAATTCATTTGAATATTGCCAACAACAACAACGACAAAAAATCACAAAACTATCGTACCAACGAAGGAGAACAGAGAGTGAGTTTAGCCTTGAACAGTGATATCTCTGCATATGACACCAAATATATTGTAACTACAAGAGTGAGTATATAAAAAAAAATTCCAGAATAAAGACATCAACACA]

[+] EMBL CD185963             [GACAACAAAGCATTTACAAAACAATCAATTCATTTGAATATTGCCAACAACAACAACGACAAAAAATCACAAAACTATCGTATCAACGAAGGAGAACAGAGAGTGAGTTTAGCCTTGAACAGTGATATCTCTGCATATGACAAAGAGTAAACAATGAAAGACAAACAGACATACACAAAAAAATAGATATGATTTATTCAAAGAGACAGAAACAAAGACAAGATTAAAAGATAAAAACAATTAGGGGGAAAAATTAAGACAACAAAGCATTTACAAAACAATCAATTCATTTGAATATTGCCAACAACAACAACGACAAAAAATCACAAAACTATCGTACCAACGAAGGAGAACAGAGAGTGAGTTTAGCCTTGAACAGTGATATCTCTGCATATGACACCAAATATATTGTAACTACAAGAGTGAGTATATAAAAAAAAATTCCAGAATAAAGACATCAACACA]




>consensus_5166#0
GACAACAAAGCATTTACAAAACAATCAATTCATTTGAATATTGCCAACAACAACAACGAC
AAAAAATCACAAAACTATCGTATCAACGAAGGAGAACAGAGAGTGAGTTTAGCCTTGAAC
AGTGATATCTCTGCATATGACAAAGAGTAAACAATGAAAGACAAACAGACATACACAAAA
AAATAGATATGATTTATTCAAAGAGACAGAAACAAAGACAAGATTAAAAGATAAAAACAA
TTAGGGGGAAAAATTAAGACAACAAAGCATTTACAAAACAATCAATTCATTTGAATATTG
CCAACAACAACAACGACAAAAAATCACAAAACTATCGTACCAACGAAGGAGAACAGAGAG
TGAGTTTAGCCTTGAACAGTGATATCTCTGCATATGACACCAAATATATTGTAACTACAA
GAGTGAGTATATAAAAAAAAATTCCAGAATAAAGACATCAACACA

consensusID : consensus_5166#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 368
fasta sequence

                              [TTTTGGCAGAAATCAACAAAATGACAAAGAGTAAACAATGAAAGACAAACAGACATACACAAAAAAATAGATATGATTTATTCAAAGAGACAGAAACAAAGACAAGATTAAAAGATAAAAACAATTAGGGGGAAAAATTAAGACAACAAAGCATTTACAAAACAATCAATTCATTTGAATATTGCCAACAACAACAACGACAAAAAATCACAAAACTATCGTGTCAACGAAGGAGAACAGAGAGTGAGTTTAGCCTTGAACAGCGATATCTCTGCATATGACACCAAATATATTGTAACTACAAGAGTGAGTATAT-AAAAAAAAATTCCAGAATAAAGACATCAACACAAAATGTGTACATAGATTTG]

[-] EMBL CD199606             [TTTTGGCAGAAATCAACAAAATGACAAAGAGTAAACAATGAAAGACAAACAGACATACACAAAAAAATAGATATGATTTATTCAAAGAGACAGAAACAAAGACAAGATTAAAAGATAAAAACAATTAGGGGGAAAAATTAAGACAACAAAGCATTTACAAAACAATCAATTCATTTGAATATTGCCAACAACAACAACGACAAAAAATCACAAAACTATCGTGTCAACGAAGGAGAACAGAGAGTGAGTTTAGCCTTGAACAGCGATATCTCTGCATATGACACCAAATATATTGTAACTACAAGAGTGAGTATAT AAAAAAAAATTCCAGAATAAAGACATCAACACAAAATGTGTACATAGATTTG]
[-] EMBL CD199500             [ TTTGGCAGAAATCATCAAAATGACAAAGAGTAAACAATGAAAGACAAACAGACATACNCAAAAAAATAGATATGATTTATTCAAAGAGACAGAAACAAAGACAAGATTAAAAGATAAAAACAATTAGGGGGAAAAATTAAGACAACAAAGCATTTACAAAACAATCAATTCATTTGAATATTGCCAACAACAACAACGACAAAAAATCACAAAACTATCGTATCAACGAAGGAGAACAGAGAGTGAGTTTAGCCTTGAGCAGTGATATCTCTGCATATGACACCAAATATATTGTAACTACAAGAGTGAGTATATAAAAAAAAAATTCCAGAATAAAGACATCAACACAAAATGTGTACATAGATTTG]




>consensus_5166#1
TTTTGGCAGAAATCAACAAAATGACAAAGAGTAAACAATGAAAGACAAACAGACATACAC
AAAAAAATAGATATGATTTATTCAAAGAGACAGAAACAAAGACAAGATTAAAAGATAAAA
ACAATTAGGGGGAAAAATTAAGACAACAAAGCATTTACAAAACAATCAATTCATTTGAAT
ATTGCCAACAACAACAACGACAAAAAATCACAAAACTATCGTGTCAACGAAGGAGAACAG
AGAGTGAGTTTAGCCTTGAACAGCGATATCTCTGCATATGACACCAAATATATTGTAACT
ACAAGAGTGAGTATATAAAAAAAAATTCCAGAATAAAGACATCAACACAAAATGTGTACA
TAGATTTG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5166#0      GACAACAAAGCATTTACAAAACAATCAATTCATTTGAATATTGCCAACAACAACAACGAC 60
consensus_5166#1      ------------------------------------------------------------
                                                                                  

consensus_5166#0      AAAAAATCACAAAACTATCGTATCAACGAAGGAGAACAGAGAGTGAGTTTAGCCTTGAAC 120
consensus_5166#1      -----------------------------------------------------TTTTGGC 7
                                                                            **   *

consensus_5166#0      AGTGATATCTCTGCATATGACAAAGAGTAAACAATGAAAGACAAACAGACATACACAAAA 180
consensus_5166#1      A--GAAATCAACAAA-ATGACAAAGAGTAAACAATGAAAGACAAACAGACATACACAAAA 64
                      *  ** ***     * ********************************************

consensus_5166#0      AAATAGATATGATTTATTCAAAGAGACAGAAACAAAGACAAGATTAAAAGATAAAAACAA 240
consensus_5166#1      AAATAGATATGATTTATTCAAAGAGACAGAAACAAAGACAAGATTAAAAGATAAAAACAA 124
                      ************************************************************

consensus_5166#0      TTAGGGGGAAAAATTAAGACAACAAAGCATTTACAAAACAATCAATTCATTTGAATATTG 300
consensus_5166#1      TTAGGGGGAAAAATTAAGACAACAAAGCATTTACAAAACAATCAATTCATTTGAATATTG 184
                      ************************************************************

consensus_5166#0      CCAACAACAACAACGACAAAAAATCACAAAACTATCGTACCAACGAAGGAGAACAGAGAG 360
consensus_5166#1      CCAACAACAACAACGACAAAAAATCACAAAACTATCGTGTCAACGAAGGAGAACAGAGAG 244
                      **************************************  ********************

consensus_5166#0      TGAGTTTAGCCTTGAACAGTGATATCTCTGCATATGACACCAAATATATTGTAACTACAA 420
consensus_5166#1      TGAGTTTAGCCTTGAACAGCGATATCTCTGCATATGACACCAAATATATTGTAACTACAA 304
                      ******************* ****************************************

consensus_5166#0      GAGTGAGTATATAAAAAAAAATTCCAGAATAAAGACATCAACACA--------------- 465
consensus_5166#1      GAGTGAGTATATAAAAAAAAATTCCAGAATAAAGACATCAACACAAAATGTGTACATAGA 364
                      *********************************************               

consensus_5166#0      ----
consensus_5166#1      TTTG 368