cluster # 5174

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Schistosoma mansoni
cluster # 5174 cluster # 5174 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5174#0 length = 440 sequences # 2

consensus_5174#1 length = 116 sequences # 1

consensusID : consensus_5174#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 440
fasta sequence

                              [CTGCAGATGTGTCAGTGATTGCAGACTCGATTCCAGAAACTCCAGTGTCTGAGGAAGTGACTACTGTCCCTGCACCTCCACCTGCAGATGTGTCAGTGATTGCAGACTCGATTCCAGAAACTCCAGTGTCTGAGGAAGTGACTACTGTCCCTGCACCTCCACCTGCAGATGTGTCAGTGATTGCAGACTCGATTCCAGAAACTCCAGTGTCTGAGGAAGTGACTACTGTCCCTGCACCTCCACCTGCAGATGTGTCAGTGATTGCAGACTCGATTCCAGAAACTCCAGTGTCTGAGGAAGTGACTACTGTCCCTGCACCTCCACCTGCAGATGTGTCAGTGATTGCAGACTCGATTCCAGAAACTCCAGTGTCTGANGGAGTGACTACTGTCCCTGCACCTCCACCTGCAGATGTGTCAGTGATTGCAGACTCGATTCCA]

[+] EMBL CD189104             [CTGCAGATGTGTCAGTGATTGCAGACTCGATTCCAGAAACTCCAGTGTCTGAGGAAGTGACTACTGTCCCTGCACCTCCACCTGCAGATGTGTCAGTGATTGCAGACTCGATTCCAGAAACTCCAGTGTCTGAGGAAGTGACTACTGTCCCTGCACCTCCACCTGCAGATGTGTCAGTGATTGCAGACTCGATTCCAGAAACTCCAGTGTCTGAGGAAGTGACTACTGTCCCTGCACCTCCACCTGCAGATGTGTCAGTGATTGCAGACTCGATTCCAGAAACTCCAGTGTCTGAGGAAGTGACTACTGTCCCTGCACCTCCACCTGCAGATGTGTCAGTGATTGCAGACTCGATTCCAGAAACTCCAGTGTCTGANGGAGTGACTACTGTCCCTGCACCTCCACCTGCAGATGTGTCAGTGATTGCAGACTCGATTCCA]
[-] EMBL CD183207             [ TGCAGATGTGTCAGTGATTGCAGACTCGATTCCAGAAACTCCAGTGTCTGTGGAAGTGACTACCGTCCCTGCACCTCCACCTGCAGATGTGTCAGTGATTGCAGACTCGATTCCAGAAACTCCAGTGTCTGAGGAAGTGACTACTGTCCCTGCACCTCCACCTGCAGATGTGTCAGTGATTGCAGACTCGATTCCAGAAACTCCAGTGTCTGAGGAAGTGACTACTGTCCCTGCACCTCCACCTGCAGATGTGTCAGTGATTGCAGACTCGATTCCAGAAACTCCAGTGTCTGAGGAAGTGACTACTGTCCCTGCACCTCCACCTGCAGATGTGTCAGTGATTGCAGACTCGATTCC                                                                                  ]




>consensus_5174#0
CTGCAGATGTGTCAGTGATTGCAGACTCGATTCCAGAAACTCCAGTGTCTGAGGAAGTGA
CTACTGTCCCTGCACCTCCACCTGCAGATGTGTCAGTGATTGCAGACTCGATTCCAGAAA
CTCCAGTGTCTGAGGAAGTGACTACTGTCCCTGCACCTCCACCTGCAGATGTGTCAGTGA
TTGCAGACTCGATTCCAGAAACTCCAGTGTCTGAGGAAGTGACTACTGTCCCTGCACCTC
CACCTGCAGATGTGTCAGTGATTGCAGACTCGATTCCAGAAACTCCAGTGTCTGAGGAAG
TGACTACTGTCCCTGCACCTCCACCTGCAGATGTGTCAGTGATTGCAGACTCGATTCCAG
AAACTCCAGTGTCTGANGGAGTGACTACTGTCCCTGCACCTCCACCTGCAGATGTGTCAG
TGATTGCAGACTCGATTCCA

consensusID : consensus_5174#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 116
fasta sequence

                              [TGCAGGTGGAGGTGCAGGGACGGTAGTCACTTCCTTTTATCTGGAGTCTCTGGAATCGAGTCTGCGATCACTGACACATCTGCAGGTGGAGGTGCAGGGACAGTAGTCACTCCCCA]

[+] EMBL CD115163             [TGCAGGTGGAGGTGCAGGGACGGTAGTCACTTCCTTTTATCTGGAGTCTCTGGAATCGAGTCTGCGATCACTGACACATCTGCAGGTGGAGGTGCAGGGACAGTAGTCACTCCCCA]




>consensus_5174#1
TGCAGGTGGAGGTGCAGGGACGGTAGTCACTTCCTTTTATCTGGAGTCTCTGGAATCGAG
TCTGCGATCACTGACACATCTGCAGGTGGAGGTGCAGGGACAGTAGTCACTCCCCA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5174#0      CTGCAGATGTGTCAGTGATTGCAGACTCGATTCCAGAAACTCCAGTGTCTGAGGAAGTGA 60
consensus_5174#1      ------------------------------------------------------------
                                                                                  

consensus_5174#0      CTACTGTCCCTGCACCTCCACCTGCAGATGTGTCAGTGATTGCAGACTCGATTCCAGAAA 120
consensus_5174#1      ------------------------------------------------------------
                                                                                  

consensus_5174#0      CTCCAGTGTCTGAGGAAGTGACTACTGTCCCTGCACCTCCACCTGCAGATGTGTCAGTGA 180
consensus_5174#1      ------------------------------------------------------------
                                                                                  

consensus_5174#0      TTGCAGACTCGATTCCAGAAACTCCAGTGTCTGAGGAAGTGACTACTGTCCCTGCACCTC 240
consensus_5174#1      ----------------------------------------------------TGCAGGTG 8
                                                                          ****  * 

consensus_5174#0      CACCTGCAGATGTGTCAGTGATTGCAGACTCGATTCCAGAAACTCCAGTGTCTGAGGAAG 300
consensus_5174#1      GAGGTGCAGGGACGGTAGTCACTTC---CTTTTATCTGGAGTCTCTGGAATC-GAGTCTG 64
                       *  *****    *  *** * * *   **    **  **  ***  *  ** ***   *

consensus_5174#0      TGACTACTGTCCCTGCACCTCCACCTGCAGATGTGTCAGTGATTGCAGACTCGATTCCAG 360
consensus_5174#1      CGATCACTG-----ACACATCTGCAGGTGGAGGTG-CAGGGACAGTAG--TCACTCCCCA 116
                       **  ****      *** **  *  *  ** *** *** **  * **  **  * **  

consensus_5174#0      AAACTCCAGTGTCTGANGGAGTGACTACTGTCCCTGCACCTCCACCTGCAGATGTGTCAG 420
consensus_5174#1      ------------------------------------------------------------
                                                                                  

consensus_5174#0      TGATTGCAGACTCGATTCCA 440
consensus_5174#1      --------------------