These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5188#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 258 fasta sequence [ATATATCTATATACATTTAAAGTATTCACATTTCATTGTTTCAAAGCTCAATACCTAAGAATGTTAGTATGTTCATAAAAGAAAAAATACATTTTTAAACACGTTTATCTTTTTACTGTTTACGTTCTAATTTATCTTGTTCATCAAATTCTTGAATTAATTTTAAAAATTTTGGATCTTTTTTATCTGGATAAAAACCAAAACGATCTCTTGCCTCTTCCATTAACATTTCCATTTTATTCTTTTTCACCCGTATCA] [+] EMBL CD139583 [ATATATCTATATACATTTAAAGTATTCACATTTCATTGTTTCAAAGCTCAATACCTAAGAATGTTAGTATGTTCATAAAAGAAAAAATACATTTTTAAACACGTTTATCTTTTTACTGTTTACGTTCTAATTTATCTTGTTCATCAAATTCTTGAATTAATTTTAAAAATTTTGGATCTTTTTTATCTGGATAAAAACCAAAACGATCTCTTGCCTCTTCCATTAACATTTCCATTTTATTCTTTTTCACCCGTATCA] consensusID : consensus_5188#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 227 fasta sequence [TGTTGACGTTCTAANTTATCTTGNTCANCAATTCNTGAANTAATTTTAAAAATTGTGGATCTTTTTTATCTGGATAAAAACCCAAACGATCTCTTGCCTCTTCCAANAACATNTCCATTTTATTCTTTTTCNCCGTATTCATAGATGTTTGTTTAGCTTCTTGATCATGGAATTTTTTTATTATTTCAGGCATTTTANNTANATTTTTCTTAATTTGTAACANTAAT] [-] EMBL SM919 [TGTTGACGTTCTAANTTATCTTGNTCANCAATTCNTGAANTAATTTTAAAAATTGTGGATCTTTTTTATCTGGATAAAAACCCAAACGATCTCTTGCCTCTTCCAANAACATNTCCATTTTATTCTTTTTCNCCGTATTCATAGATGTTTGTTTAGCTTCTTGATCATGGAATTTTTTTATTATTTCAGGCATTTTANNTANATTTTTCTTAATTTGTAACANTAAT] consensusID : consensus_5188#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 162 fasta sequence [GTATATATCTATATACATTTAAAGTATTCACATTTCATTGTTTCAAAGCTCAATACCTAAGAATGTTAGTATCTTCATAAAAGAAAAANTACATTTTCAAACACGTTCATCTCCCTTTCTAGTTTACGNTCTCAATTTAAATANGTTCCATCAAATTCTTGC] [+] EMBL SMAA40584 [GTATATATCTATATACATTTAAAGTATTCACATTTCATTGTTTCAAAGCTCAATACCTAAGAATGTTAGTATCTTCATAAAAGAAAAANTACATTTTCAAACACGTTCATCTCCCTTTCTAGTTTACGNTCTCAATTTAAATANGTTCCATCAAATTCTTGC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5188#0 --ATATATCTATATACATTTAAAGTATTCACATTTCATTGTTTCAAAGCTCAATACCTAA 58 consensus_5188#2 GTATATATCTATATACATTTAAAGTATTCACATTTCATTGTTTCAAAGCTCAATACCTAA 60 consensus_5188#1 ---TGTTGACGTTCTAANTTATCTTGNTCANCAATTCNTGAANTAATTTTAAAAATTGTG 57 * * * * *** * *** * ** ** * ** * consensus_5188#0 GAATGTTAGTATGTTCATAAAAG---AAAAAATACATT--TTTAAACACGTTTATCTT-- 111 consensus_5188#2 GAATGTTAGTATCTTCATAAAAG---AAAAANTACATT--TTCAAACACGTTCATCTCCC 115 consensus_5188#1 GATCTTTTTTATCTGGATAAAAACCCAAACGATCTCTTGCCTCTTCCAANAACATNTCCA 117 ** ** *** * ****** *** * ** * ** ** * consensus_5188#0 TTTACTGTTTACGTTCT-AATTTATCTTG--TTCATCAAATTCTTGAATTAATTTTAAAA 168 consensus_5188#2 TTTCTAGTTTACGNTCTCAATTTAAATANGTTCCATCAAATTCTTGC------------- 162 consensus_5188#1 TTTTATTCTTTTTCNCCGTATTCATAGATGTTTGTTTAGCTTCTTGATCATGGAATTTTT 177 *** ** * *** * * * * ****** consensus_5188#0 ATTTTGGATCTTTTTTATCTGGATAAAAACCAAAACGATCTCTTGCCTCTTCCATTAACA 228 consensus_5188#2 ------------------------------------------------------------ consensus_5188#1 TTATTATTTCAGGCATTTTANNTANATTTTTCTTAATTTGTAACANTAAT---------- 227 consensus_5188#0 TTTCCATTTTATTCTTTTTCACCCGTATCA 258 consensus_5188#2 ------------------------------ consensus_5188#1 ------------------------------ |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||