cluster # 5191

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Schistosoma mansoni
cluster # 5191 cluster # 5191 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5191#0 length = 248 sequences # 1

consensus_5191#1 length = 241 sequences # 2

consensusID : consensus_5191#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 248
fasta sequence

                              [GTTGATATCAGCCGCAGTCGCTAGTCTCCATCGCACCACATACCATTCGCACATAACAGGGCGCACATTCATGGCTCCCCATTTTGACTGTTAATAAGGAATCACAGGATAGAGCCTACACAGATTACCTTCTTTACATTCTCATGGAAACTCTGGTATTCAGCTCTTGACTTTTCCGAATGATAATGATACTTTAAACTGTACAACCCTGCCACATAATTCTGGTGTGTTGCACACATTTATTCCTC]

[+] EMBL CD158786             [GTTGATATCAGCCGCAGTCGCTAGTCTCCATCGCACCACATACCATTCGCACATAACAGGGCGCACATTCATGGCTCCCCATTTTGACTGTTAATAAGGAATCACAGGATAGAGCCTACACAGATTACCTTCTTTACATTCTCATGGAAACTCTGGTATTCAGCTCTTGACTTTTCCGAATGATAATGATACTTTAAACTGTACAACCCTGCCACATAATTCTGGTGTGTTGCACACATTTATTCCTC]




>consensus_5191#0
GTTGATATCAGCCGCAGTCGCTAGTCTCCATCGCACCACATACCATTCGCACATAACAGG
GCGCACATTCATGGCTCCCCATTTTGACTGTTAATAAGGAATCACAGGATAGAGCCTACA
CAGATTACCTTCTTTACATTCTCATGGAAACTCTGGTATTCAGCTCTTGACTTTTCCGAA
TGATAATGATACTTTAAACTGTACAACCCTGCCACATAATTCTGGTGTGTTGCACACATT
TATTCCTC

consensusID : consensus_5191#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 241
fasta sequence

                              [TTCATATCAGTGCATTGAATCTCCATCCAGACTACCATTCCACAGAAAATGGCACAGATTCATCGCTCCCCATTTTGACTGTTAATAATGAATCACAGGATAGTGTCGCAAACAGATTACCTTCTTTAGATTCTCATGTAAACTCTGGTATTCAGTTCTTGACTTTTCCGAATGATAATGATACTTTAAACTGTACAACCCTGCCACATAATTCTGTTGTGTTGCAGTCATTTATTCCTCG]

[-] EMBL CD158729             [TTCATATCAGTGCATTGAATCTCCATCCAGACTACCATTCCACAGAAAATGGCACAGATTCATCGCTCCCCATTTTGACTGTTAATAATGAATCACAGGATAGTGTCGCAAACAGATTACCTTCTTTAGATTCTCATGTAAACTCTGGTATTCAGTTCTTGACTTTTCCGAATGATAATGATACTTTAAACTGTACAACCCTGCCACATAATTCTGTTGTGTTGCAGTCATTTATTCCTCG]
[-] EMBL CD158491             [TTCATATCAGTGCATTGAATCTCCATCCAGACTACCATTCCACAGAAAATGGCACAGATTCATCGCTCCCCATTTTGACTGTTAATAATGAATCACAGGATAGTGTCGCAAACAGATTACCTTCTTTAGATTCTCATGTAAACTCTGGTATTCAGTTCTTGACTTTTCCGAGTGATAATGATACTTTAAACTGTACAACCCTGCCACATAATTCTGTTGTGTTGCAGTCATTTATTCCTCG]




>consensus_5191#1
TTCATATCAGTGCATTGAATCTCCATCCAGACTACCATTCCACAGAAAATGGCACAGATT
CATCGCTCCCCATTTTGACTGTTAATAATGAATCACAGGATAGTGTCGCAAACAGATTAC
CTTCTTTAGATTCTCATGTAAACTCTGGTATTCAGTTCTTGACTTTTCCGAATGATAATG
ATACTTTAAACTGTACAACCCTGCCACATAATTCTGTTGTGTTGCAGTCATTTATTCCTC
G

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5191#0      GTTGATATCAGCCGCAGTCGCTAGTCTCCATCGCACCACATACCATTCGCACATAACAGG 60
consensus_5191#1      -TTCATATCAGT-GCATTG---AATCTCCATC---CAGACTACCATTC-CACAGAAAATG 51
                       ** *******  *** *    * ********   *    ******** **** ** * *

consensus_5191#0      GCGCACATTCATGGCTCCCCATTTTGACTGTTAATAAGGAATCACAGGATAGAGCC-TAC 119
consensus_5191#1      GCACAGATTCATCGCTCCCCATTTTGACTGTTAATAATGAATCACAGGATAGTGTCGCAA 111
                      ** ** ****** ************************ ************** * *  * 

consensus_5191#0      ACAGATTACCTTCTTTACATTCTCATGGAAACTCTGGTATTCAGCTCTTGACTTTTCCGA 179
consensus_5191#1      ACAGATTACCTTCTTTAGATTCTCATGTAAACTCTGGTATTCAGTTCTTGACTTTTCCGA 171
                      ***************** ********* **************** ***************

consensus_5191#0      ATGATAATGATACTTTAAACTGTACAACCCTGCCACATAATTCTGGTGTGTTGCACACAT 239
consensus_5191#1      ATGATAATGATACTTTAAACTGTACAACCCTGCCACATAATTCTGTTGTGTTGCAGTCAT 231
                      ********************************************* *********  ***

consensus_5191#0      TTATTCCTC- 248
consensus_5191#1      TTATTCCTCG 241
                      *********