cluster # 52

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Schistosoma mansoni
cluster # 52 cluster # 52 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_52#0 length = 340 sequences # 1

consensus_52#1 length = 311 sequences # 1

consensusID : consensus_52#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 340
fasta sequence

                              [GTAAACAATACATACAACTATGCAACCTAAACATGATAAATATCGTGAGATAAACAGGCGACTGACTCAAATTGCAGACAGAAAACACAACTAATTACTTTACTATGTATATTACAAAATTAACAGTAACTTACTTCAAGTTCTCGTACTAAATGATTTTGACCTATAGACATTTGAGATGATTCACTAGATAATAAATAATTAGGTGAACAATGTGAATAATCTTTCGTCAATTGATCATGTGATTCACAAGTTTGATGACAGTATTGTCGACATGATTCAGAATGATGATATGATTCTAGCAAACTTGATGATGAAGACGGTGACATCCTAGTGTTTG]

[+] EMBL CD196057             [GTAAACAATACATACAACTATGCAACCTAAACATGATAAATATCGTGAGATAAACAGGCGACTGACTCAAATTGCAGACAGAAAACACAACTAATTACTTTACTATGTATATTACAAAATTAACAGTAACTTACTTCAAGTTCTCGTACTAAATGATTTTGACCTATAGACATTTGAGATGATTCACTAGATAATAAATAATTAGGTGAACAATGTGAATAATCTTTCGTCAATTGATCATGTGATTCACAAGTTTGATGACAGTATTGTCGACATGATTCAGAATGATGATATGATTCTAGCAAACTTGATGATGAAGACGGTGACATCCTAGTGTTTG]




>consensus_52#0
GTAAACAATACATACAACTATGCAACCTAAACATGATAAATATCGTGAGATAAACAGGCG
ACTGACTCAAATTGCAGACAGAAAACACAACTAATTACTTTACTATGTATATTACAAAAT
TAACAGTAACTTACTTCAAGTTCTCGTACTAAATGATTTTGACCTATAGACATTTGAGAT
GATTCACTAGATAATAAATAATTAGGTGAACAATGTGAATAATCTTTCGTCAATTGATCA
TGTGATTCACAAGTTTGATGACAGTATTGTCGACATGATTCAGAATGATGATATGATTCT
AGCAAACTTGATGATGAAGACGGTGACATCCTAGTGTTTG

consensusID : consensus_52#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 311
fasta sequence

                              [TAGATGTTCATATGCTCGATTGCGTTTTTCTAACATTGAAGCTAATTCAACATTTCTTTCTTCAAGTTCTCGTACTAAATGATTTTGACCTATAGACATCTGAGATGATTCACTAGATAATAAAGAATTCGGTGAACAATGTGAATAATCTTTCGTCAATTGATCATGTGATTCACAAGTTTGATGACAGTATTGTCGACAGGATTCAGAATGATGATATGATTCTAGCAAACTTGATGATGAAGACGGTGACATCCTAGTGTTTTTTAATTCATGGTTTGAAGTAAATTCATTCATTATTGGGCTAGTAG]

[+] EMBL CD180816             [TAGATGTTCATATGCTCGATTGCGTTTTTCTAACATTGAAGCTAATTCAACATTTCTTTCTTCAAGTTCTCGTACTAAATGATTTTGACCTATAGACATCTGAGATGATTCACTAGATAATAAAGAATTCGGTGAACAATGTGAATAATCTTTCGTCAATTGATCATGTGATTCACAAGTTTGATGACAGTATTGTCGACAGGATTCAGAATGATGATATGATTCTAGCAAACTTGATGATGAAGACGGTGACATCCTAGTGTTTTTTAATTCATGGTTTGAAGTAAATTCATTCATTATTGGGCTAGTAG]




>consensus_52#1
TAGATGTTCATATGCTCGATTGCGTTTTTCTAACATTGAAGCTAATTCAACATTTCTTTC
TTCAAGTTCTCGTACTAAATGATTTTGACCTATAGACATCTGAGATGATTCACTAGATAA
TAAAGAATTCGGTGAACAATGTGAATAATCTTTCGTCAATTGATCATGTGATTCACAAGT
TTGATGACAGTATTGTCGACAGGATTCAGAATGATGATATGATTCTAGCAAACTTGATGA
TGAAGACGGTGACATCCTAGTGTTTTTTAATTCATGGTTTGAAGTAAATTCATTCATTAT
TGGGCTAGTAG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_52#0      GTAAACAATACATACAACTATGCAACCTAAACATGATAAATATCGTGAGATAAACAGGCG 60
consensus_52#1      ------------------------------------------------------------
                                                                                

consensus_52#0      ACTGACTCAAATTGCAGACAGAAAACACAACTAATTACTTTACTATGTATATTACAA--A 118
consensus_52#1      --------------TAGAT-GTTCATATGCTCGATTGCGTTTTTCTA-ACATTGAAGCTA 44
                                   ***  *   * *      *** * **  * *  * ***  *   *

consensus_52#0      ATTAACAGTAACTTACTTCAAGTTCTCGTACTAAATGATTTTGACCTATAGACATTTGAG 178
consensus_52#1      ATTCAACATTTCTTTCTTCAAGTTCTCGTACTAAATGATTTTGACCTATAGACATCTGAG 104
                    *** *   *  *** **************************************** ****

consensus_52#0      ATGATTCACTAGATAATAAATAATTAGGTGAACAATGTGAATAATCTTTCGTCAATTGAT 238
consensus_52#1      ATGATTCACTAGATAATAAAGAATTCGGTGAACAATGTGAATAATCTTTCGTCAATTGAT 164
                    ******************** **** **********************************

consensus_52#0      CATGTGATTCACAAGTTTGATGACAGTATTGTCGACATGATTCAGAATGATGATATGATT 298
consensus_52#1      CATGTGATTCACAAGTTTGATGACAGTATTGTCGACAGGATTCAGAATGATGATATGATT 224
                    ************************************* **********************

consensus_52#0      CTAGCAAACTTGATGATGAAGACGGTGACATCCTAGTGTTTG------------------ 340
consensus_52#1      CTAGCAAACTTGATGATGAAGACGGTGACATCCTAGTGTTTTTTAATTCATGGTTTGAAG 284
                    *****************************************                   

consensus_52#0      ---------------------------
consensus_52#1      TAAATTCATTCATTATTGGGCTAGTAG 311