These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5214#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 473 fasta sequence [GTAGACGAAAGCATCTCATGCTCCAGGTAACGAAGGCCGAAATGATTCGCGGTCCTGCATAACTCCTTGTTGACAACAGATTTCTTCGAAAAGCCACTTTCCAGTGGCATCTTCCGGCACGGATATTTCTTCCATTTTTTCGTCTTCTAATAGTCTCACCGAGACAACAAAGTATCCATGTGACATTACTGCTGCAAAACAGAATATGCCAGAAGAGTACGACGTAAAAGTTTGTTATTTAACCGTTCAGCAGCTAGTTTAGAAGAATAACTGTTAGATGTTGATCTTATTGTTTATTGATTTTTACTATTCCAAGTGCGTTAACATGAAAAGGTTGTGGGAATGTTGGTGGTAATAATTTCAATAATTGAATGTGAAGCTCATTGAATGTGATTTACCAAAAAACAATAAGTGAAAACTTCAGCGGGAATGTAGCGCACTATCGCATTAACGAACGCAAAAATGTCCCTTCC] [+] EMBL CD196015 [GTAGACGAAAGCATCTCATGCTCCAGGTAACGAAGGCCGAAATGATTCGCGGTCCTGCATAACTCCTTGTTGACAACAGATTTCTTCGAAAAGCCACTTTCCAGTGGCATCTTCCGGCACGGATATTTCTTCCATTTTTTCGTCTTCTAATAGTCTCACC ] [+] EMBL CD177896 [ tgGAAGGCCGAAAT CTTCGCGTTCTTGCATAACTCCTTGTTGACAACAGATTTCTTCAAAAAGCCACTTTCCAGTGGCATCTTCCGGCACGTTTATTTCTTCCATTTTTTCGTCTTCTAATAGTCTCACCGAGACAACAAAGTATCCATGTGACATTACTGCTGCAAAACAGAATATGCCAGAAGAGTACGACGTAAAAGTTTGTTATTTAACCGTTCAGCAGCTAGTTTAGAAGAATAACTGTTAGATGTTGATCTTATTGTTTATTGATTTTTACTATTCCAAGTGCGTTAACATGAAAAGGTTGTGGGAATGTTGGTGGTAATAATTTCAATAATTGAATGTGAAGCTCATTGAATGTGATTTACCAAAAAACAATAAGTGAAAACTTCAGCGGGAATGTAGCGCACTATCGCATTAACGAACGCAAAAATGTCCCTTCC] consensusID : consensus_5214#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 272 fasta sequence [TCTAATAGTCTCACCGAGACAACAAAGTATCCATGTGACATTACTGCTGCAAAACAGAATATGCCAGAAGAGTACGACGTAAAAGTTTGTTATTTAACCGTTCAGCAGCTAGTTTAGAAGAATAACTGTTAGATGTTGATCTTATTGTTTATTGATTTTTACTATTCCAAGTGCGTTAACATGAAAAGGTTGTGGGAATGTTGGTGGTAATAATTTCAATAATTGAATGTGAAGCTCATTGAATGTGATTTACCAAAAAACCCCTCGTGACG] [-] EMBL CD077752 [TCTAATAGTCTCACCGAGACAACAAAGTATCCATGTGACATTACTGCTGCAAAACAGAATATGCCAGAAGAGTACGACGTAAAAGTTTGTTATTTAACCGTTCAGCAGCTAGTTTAGAAGAATAACTGTTAGATGTTGATCTTATTGTTTATTGATTTTTACTATTCCAAGTGCGTTAACATGAAAAGGTTGTGGGAATGTTGGTGGTAATAATTTCAATAATTGAATGTGAAGCTCATTGAATGTGATTTACCAAAAAACCCCTCGTGACG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5214#0 GTAGACGAAAGCATCTCATGCTCCAGGTAACGAAGGCCGAAATGATTCGCGGTCCTGCAT 60 consensus_5214#1 ------------------------------------------------------------ consensus_5214#0 AACTCCTTGTTGACAACAGATTTCTTCGAAAAGCCACTTTCCAGTGGCATCTTCCGGCAC 120 consensus_5214#1 ------------------------------------------------------------ consensus_5214#0 GGATATTTCTTCCATTTTTTCGTCTTCTAATAGTCTCACCGAGACAACAAAGTATCCATG 180 consensus_5214#1 -------------------------TCTAATAGTCTCACCGAGACAACAAAGTATCCATG 35 *********************************** consensus_5214#0 TGACATTACTGCTGCAAAACAGAATATGCCAGAAGAGTACGACGTAAAAGTTTGTTATTT 240 consensus_5214#1 TGACATTACTGCTGCAAAACAGAATATGCCAGAAGAGTACGACGTAAAAGTTTGTTATTT 95 ************************************************************ consensus_5214#0 AACCGTTCAGCAGCTAGTTTAGAAGAATAACTGTTAGATGTTGATCTTATTGTTTATTGA 300 consensus_5214#1 AACCGTTCAGCAGCTAGTTTAGAAGAATAACTGTTAGATGTTGATCTTATTGTTTATTGA 155 ************************************************************ consensus_5214#0 TTTTTACTATTCCAAGTGCGTTAACATGAAAAGGTTGTGGGAATGTTGGTGGTAATAATT 360 consensus_5214#1 TTTTTACTATTCCAAGTGCGTTAACATGAAAAGGTTGTGGGAATGTTGGTGGTAATAATT 215 ************************************************************ consensus_5214#0 TCAATAATTGAATGTGAAGCTCATTGAATGTGATTTACCAAAAAACAATAAGTGAAAACT 420 consensus_5214#1 TCAATAATTGAATGTGAAGCTCATTGAATGTGATTTACCAAAAAACCCCTCGTGACG--- 272 ********************************************** **** consensus_5214#0 TCAGCGGGAATGTAGCGCACTATCGCATTAACGAACGCAAAAATGTCCCTTCC 473 consensus_5214#1 ----------------------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||