cluster # 5217

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Schistosoma mansoni
cluster # 5217 cluster # 5217 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5217#0 length = 554 sequences # 2

consensus_5217#1 length = 411 sequences # 1

consensusID : consensus_5217#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 554
fasta sequence

                              [TAAACTTGTTTGTTCGTAGACTAATTAAAGACGTGCTATAAAATATAAGGTTAGGAAACAGTCGTACAGAATTAATCTATATTTTTCATTTATTTCAAAATACCTACAATACTTTATACTTCAGTACAGAATTTACTGTTGCATTTTACATGTAATATTCAACTAGTGTTATTAATTTTAGGAACAATAAGTCTAGTGTGTGAGTTGAAGAATTATTCTGTATAACCCTGACAAAATGGGTGATATATTGCTCACCACGTGTAACAAAGGCTGAAAGACGTCGAGATCCCACTTTTTTCAATGATAAACTAACAATCAATGAAAACAGTTTATCTTTAAGATATTGCTGAATTGTACCGTCTTTTGAACTTGCATCCATATTATTTTGAATTTTATTATCAGAAATGCATATATCTGATTCTTCGTAAGGCCATTCCACTGGGATGATAGAAATGCCTTGAGTTTGATAGAAGTCAGCAGTTCCACAACTTCCGTATAATTTGTATCCAAGTTGGTGTAACTGTTTAACACTAAGAAACAAAGTATGANTAAGT]

[+] EMBL CD114846             [TAAACTTGTTTGTTCGTAGACTAATTAAAGACGTGCTATAAAATATAAGGTTAGGAAACAGTCGTACAGAATTAATCTATATTTTTCATTTATTTCAAAATACCTACAATACTTTATACTTCAGTACAGAATTTACTGTTGCATTTTACATGTAATATTCAACTAGTGTTATTAATTTTAGGAACAATAAGTCTAGTGTGTGAGTTGAAGAATTATTCTGTATAACCCTGACAAAATGGGTGATATATTGCTCACCACGTGTAACAAAGGCTGAAAGACGTCGAGATCCCACTTTTTTCAATGATAAACTAACAATCAATGAAAACAGTTTATCTTTAAGATATTGCTGAATTGTACCGTCTTTTGAACTTGCATCCATATTATTTTGAATTTTATTATCAGAAATGCATATATCTGATTCTTCGTAAGGCCATTCCACTGGGATGATAGAAATGCCTTGAGTTTGATAGAAGTCAGCAGTTCCACAACTTCCGTATAATTTGTATCCAAGTTGGTGTAACTGTTTAACACTAAGAAACAAAGTATGANTAAGT]
[+] EMBL CD114955             [TAAACTTGTTTGTTCGTAGACTAATTAAAGACGTGCTATAAAATATAAGGTTAGGAAACAGTCGTACAGAATTAATCTATATTTTTCATTTATTTCAAAATACCTACAATACTTTATACTTCAGTACAGAATTTACTGTTGCATTTTACATGTAATATTCAACTAGTGTTATTAATTTTAGGAACAATAAGTCTAGTGTGTGAGTTGAAGAATTATTCTGTATAACCCTGACAAAATGAGTGATATATTGCTCACCACGTGTAACAAAGGCTGAAAGACGTCGAGATCCCACTTTTTTCAATGATAAACTAACAATCAATGAAAACAGTTTATCTTTAAGATATTGCTGAATTGTACCGTCTTTTGAACTTGCATCCATATTATTTTGAATTTTATTATCAGAAATGCATATATCTGATTCTTCGTAAGGCCATTCCACTGGGATGATAGAAATGCCTTGAGTTTGATAGAAGTCAGCAGTTCCACAACTTCCGTATAATTTGTATCCAAGTTGGTGTAACT                                ]




>consensus_5217#0
TAAACTTGTTTGTTCGTAGACTAATTAAAGACGTGCTATAAAATATAAGGTTAGGAAACA
GTCGTACAGAATTAATCTATATTTTTCATTTATTTCAAAATACCTACAATACTTTATACT
TCAGTACAGAATTTACTGTTGCATTTTACATGTAATATTCAACTAGTGTTATTAATTTTA
GGAACAATAAGTCTAGTGTGTGAGTTGAAGAATTATTCTGTATAACCCTGACAAAATGGG
TGATATATTGCTCACCACGTGTAACAAAGGCTGAAAGACGTCGAGATCCCACTTTTTTCA
ATGATAAACTAACAATCAATGAAAACAGTTTATCTTTAAGATATTGCTGAATTGTACCGT
CTTTTGAACTTGCATCCATATTATTTTGAATTTTATTATCAGAAATGCATATATCTGATT
CTTCGTAAGGCCATTCCACTGGGATGATAGAAATGCCTTGAGTTTGATAGAAGTCAGCAG
TTCCACAACTTCCGTATAATTTGTATCCAAGTTGGTGTAACTGTTTAACACTAAGAAACA
AAGTATGANTAAGT

consensusID : consensus_5217#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 411
fasta sequence

                              [TCAAACCTGGCAAATATATTATTTGACTAGAAGTTATTGAATGCAATGGAAGTAAACGATGAAGGAATGATTGCTTATATACGTTATATTCATTGTCTTCAGATTTTATTAATGTTTTATTAGCACTCTGTCCATGAAAATAACGATAAAGAGCTTCGATAAGAAGTTTAGCCAGTTTTACATCAGTTAGAAGAGGTACGTTTGTGTCAACGGCAAGACGTCTAGTTTGATAGCCACGTGTAACAAAGGCTGAAAGACGTCGAGATCCCACTTTTTTCAATGATAAACTAACAATCAATGAGAACAGTTTATCTTTAAGATATTGCTGAATTGTACCGTCTTTTGAACTTGCATCCATATTATTTTGAATTTTATTATCAGAAATGCATATATCTGATTCTTCGTAAGGCC]

[+] EMBL CD154406             [TCAAACCTGGCAAATATATTATTTGACTAGAAGTTATTGAATGCAATGGAAGTAAACGATGAAGGAATGATTGCTTATATACGTTATATTCATTGTCTTCAGATTTTATTAATGTTTTATTAGCACTCTGTCCATGAAAATAACGATAAAGAGCTTCGATAAGAAGTTTAGCCAGTTTTACATCAGTTAGAAGAGGTACGTTTGTGTCAACGGCAAGACGTCTAGTTTGATAGCCACGTGTAACAAAGGCTGAAAGACGTCGAGATCCCACTTTTTTCAATGATAAACTAACAATCAATGAGAACAGTTTATCTTTAAGATATTGCTGAATTGTACCGTCTTTTGAACTTGCATCCATATTATTTTGAATTTTATTATCAGAAATGCATATATCTGATTCTTCGTAAGGCC]




>consensus_5217#1
TCAAACCTGGCAAATATATTATTTGACTAGAAGTTATTGAATGCAATGGAAGTAAACGAT
GAAGGAATGATTGCTTATATACGTTATATTCATTGTCTTCAGATTTTATTAATGTTTTAT
TAGCACTCTGTCCATGAAAATAACGATAAAGAGCTTCGATAAGAAGTTTAGCCAGTTTTA
CATCAGTTAGAAGAGGTACGTTTGTGTCAACGGCAAGACGTCTAGTTTGATAGCCACGTG
TAACAAAGGCTGAAAGACGTCGAGATCCCACTTTTTTCAATGATAAACTAACAATCAATG
AGAACAGTTTATCTTTAAGATATTGCTGAATTGTACCGTCTTTTGAACTTGCATCCATAT
TATTTTGAATTTTATTATCAGAAATGCATATATCTGATTCTTCGTAAGGCC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5217#0      -TAAACTTGTTTGTTCGTAGACTAATTAAAGACGTGCTATAAAATATAAGGTTAGGAAAC 59
consensus_5217#1      TCAAACCTG---GCAAATATATTATTTGACTAGAAGTTATTGAATGCAATGGAAGTAAAC 57
                        **** **   *    ** * ** ** *  *   * ***  ***  ** *  ** ****

consensus_5217#0      AGTCGTACAGAATTAATCTATATTTTTCATTTATTTCAAAATACCTACAATACTTTATAC 119
consensus_5217#1      GAT------GAAGGAATG---ATTGCTTATATACGTTA---TATTCATTGT-CTTCAGAT 104
                        *      ***  ***    ***  * ** **  * *   **   *   * *** * * 

consensus_5217#0      TTCAGTACAGAATTTACTGTTGCATTTTACATGTAATATTCAACTAGTGTTATTAATTTT 179
consensus_5217#1      TTTATTA-ATGTTTTATTAGCACTCTGTCCATGAAAATAACGATAAAGAGCTTCGATAAG 163
                      ** * ** *   **** *    *  * * **** **    * *  *      *  **   

consensus_5217#0      AGGAACAATAAGTCTAGTGTGTGAGTT-GAAGAATTATTCTGTATAACCCTGACAAAATG 238
consensus_5217#1      AAGTTTAGCCAGTTT--TACATCAGTTAGAAGAGGTACGTT-TGTGTCAACGGCAAGACG 220
                      * *   *   *** *  *   * **** *****  **   * * *  *   * *** * *

consensus_5217#0      GGTGATATATTGCTCACCACGTGTAACAAAGGCTGAAAGACGTCGAGATCCCACTTTTTT 298
consensus_5217#1      TCTAGT---TTGATAGCCACGTGTAACAAAGGCTGAAAGACGTCGAGATCCCACTTTTTT 277
                        *  *   *** *  ********************************************

consensus_5217#0      CAATGATAAACTAACAATCAATGAAAACAGTTTATCTTTAAGATATTGCTGAATTGTACC 358
consensus_5217#1      CAATGATAAACTAACAATCAATGAGAACAGTTTATCTTTAAGATATTGCTGAATTGTACC 337
                      ************************ ***********************************

consensus_5217#0      GTCTTTTGAACTTGCATCCATATTATTTTGAATTTTATTATCAGAAATGCATATATCTGA 418
consensus_5217#1      GTCTTTTGAACTTGCATCCATATTATTTTGAATTTTATTATCAGAAATGCATATATCTGA 397
                      ************************************************************

consensus_5217#0      TTCTTCGTAAGGCCATTCCACTGGGATGATAGAAATGCCTTGAGTTTGATAGAAGTCAGC 478
consensus_5217#1      TTCTTCGTAAGGCC---------------------------------------------- 411
                      **************                                              

consensus_5217#0      AGTTCCACAACTTCCGTATAATTTGTATCCAAGTTGGTGTAACTGTTTAACACTAAGAAA 538
consensus_5217#1      ------------------------------------------------------------
                                                                                  

consensus_5217#0      CAAAGTATGANTAAGT 554
consensus_5217#1      ----------------