cluster # 5219

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Schistosoma mansoni
cluster # 5219 cluster # 5219 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5219#0 length = 557 sequences # 2

consensus_5219#1 length = 127 sequences # 1

consensusID : consensus_5219#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 557
fasta sequence

                              [TGCATGTCCAAGATGTCACTCTGCTTATTGTGAATTACCAGTCGAATGTAATGTTTGTGGATTAACCATTAGTGGCTGCACCTCATCTTGCTCGTGCCTATCATCATTTATTCCCATTGGATTTATTTGAACCAGTAAATGGTAGTGGTAGTTTTAGTGAAACATCATTAGATAATCAAGAAAAATCAAAAGAAACTATTGATTCAGCAGATAGCGTGGATCATCAACAACGTCTTTGCTTTGGTTGTAATGTAATTATACCGTCCAAAATTCCTGGATATCAATGTCCTAAATGT-AATTCATATTCCGGTCACTCATGTGATGCTGTTCTACATGATTCCATTCATTCACGTCCTGGATGTTTTACGTTGTTGTAATTGAAGC-ACATGATGTTGATGAATT-AGATATTTTTTTATTTGGACAGG-TAATTC-ACC-AAAAT-ATAAAACGGCCAGTCAAATTGCATTTTTACTCTACAATATGATAGAAACCCCCCTATGAGAAATGTTGTTCTCTTTTGTTAACATGTTTTGCTGTTTGACTGTAAAATAAATGTTCCA]

[+] EMBL BE431277             [TGCATGTCCAAGATGTCACTCTGCTTATTGTGAATTACCAGTCGAATGTAATGTTTGTGGATTAACCATTAGTGGCTGCACCTCATCTTGCTCGTGCCTATCATCATTTATTCCCATTGGATTTATTTGAACCAGTAAATGGTAGTGGTAGTTTTAGTGAAACATCATTAGATAATCAAGAAAAATCAAAAGAAACTATTGATTCAGCAGATAGCGTGGATCATCAACAACGTCTTTGCTTTGGTTGTAATGTAATTATACCGTCCAAAATTCCTGGATATCAATGTCCTAAATGT AATTCATATTCCGGTCACTCATGTGATGCTGTTCTACATGATTCCATTCATTCACGTCCTGGATGTTTTACGTTGTTGTAATTGAAGC ACATGATGTTGATGAATT AGATATTTTTTTATTTGGACAGG TAATTC ACC AAAAT ATAAAACGGC                                                                                                            ]
[-] EMBL CD073059             [                                                                                                                                                         TTAGTGNAACATCATTAGATAATCAAGAAAAATCAAAAGAAACTATTGATTCAGCAGATAGCGTGGATCATCAACAACGTCTTTGCTTTGGTTGTAATGTAATTATACCGTCCAAAATTCCTGGATATCAATGTCCTAAATGTAAATTCATATT CTGTCATTCATGTGATGCTGTTTTACATGATTCCATTCATTCATGTCCTGGATGTTTAACGTTGTTGTAATTGATGCAACATGATGTTGATGAATTGAGATAATTTTATAATTGAACAGGAAAATTCTACCAAAAATAAAAAAACGGCCAGTCAAATTGCATTTTTACTCTACAATATGATAGAAACCCCCCTATGAGAAATGTTGTTCTCTTTTGTTAACATGTTTTGCTGTTTGACTGTAAAATAAATGTTCCA]




>consensus_5219#0
TGCATGTCCAAGATGTCACTCTGCTTATTGTGAATTACCAGTCGAATGTAATGTTTGTGG
ATTAACCATTAGTGGCTGCACCTCATCTTGCTCGTGCCTATCATCATTTATTCCCATTGG
ATTTATTTGAACCAGTAAATGGTAGTGGTAGTTTTAGTGAAACATCATTAGATAATCAAG
AAAAATCAAAAGAAACTATTGATTCAGCAGATAGCGTGGATCATCAACAACGTCTTTGCT
TTGGTTGTAATGTAATTATACCGTCCAAAATTCCTGGATATCAATGTCCTAAATGTAATT
CATATTCCGGTCACTCATGTGATGCTGTTCTACATGATTCCATTCATTCACGTCCTGGAT
GTTTTACGTTGTTGTAATTGAAGCACATGATGTTGATGAATTAGATATTTTTTTATTTGG
ACAGGTAATTCACCAAAATATAAAACGGCCAGTCAAATTGCATTTTTACTCTACAATATG
ATAGAAACCCCCCTATGAGAAATGTTGTTCTCTTTTGTTAACATGTTTTGCTGTTTGACT
GTAAAATAAATGTTCCA

consensusID : consensus_5219#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 127
fasta sequence

                              [GTAAATTCATATTCTGTCATTCATGTGATGCTGTTCTACATGATTCCATTCATTCATGTCCTGGATGTTTAACGTTGTTGTAATTGATGCAACATGATGTTGATGAATTGAGATAATTTTATAATTG]

[+] EMBL CD146337             [GTAAATTCATATTCTGTCATTCATGTGATGCTGTTCTACATGATTCCATTCATTCATGTCCTGGATGTTTAACGTTGTTGTAATTGATGCAACATGATGTTGATGAATTGAGATAATTTTATAATTG]




>consensus_5219#1
GTAAATTCATATTCTGTCATTCATGTGATGCTGTTCTACATGATTCCATTCATTCATGTC
CTGGATGTTTAACGTTGTTGTAATTGATGCAACATGATGTTGATGAATTGAGATAATTTT
ATAATTG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5219#0      TGCATGTCCAAGATGTCACTCTGCTTATTGTGAATTACCAGTCGAATGTAATGTTTGTGG 60
consensus_5219#1      ------------------------------------------------------------
                                                                                  

consensus_5219#0      ATTAACCATTAGTGGCTGCACCTCATCTTGCTCGTGCCTATCATCATTTATTCCCATTGG 120
consensus_5219#1      ------------------------------------------------------------
                                                                                  

consensus_5219#0      ATTTATTTGAACCAGTAAATGGTAGTGGTAGTTTTAGTGAAACATCATTAGATAATCAAG 180
consensus_5219#1      ------------------------------------------------------------
                                                                                  

consensus_5219#0      AAAAATCAAAAGAAACTATTGATTCAGCAGATAGCGTGGATCATCAACAACGTCTTTGCT 240
consensus_5219#1      ------------------------------------------------------------
                                                                                  

consensus_5219#0      TTGGTTGTAATGTAATTATACCGTCCAAAATTCCTGGATATCAATGTCCTAAATGTAATT 300
consensus_5219#1      ----------------------------------------------------GTA-AATT 7
                                                                           *  ****

consensus_5219#0      CATATTCCGGTCACTCATGTGATGCTGTTCTACATGATTCCATTCATTCACGTCCTGGAT 360
consensus_5219#1      CATATTCTG-TCATTCATGTGATGCTGTTCTACATGATTCCATTCATTCATGTCCTGGAT 66
                      ******* * *** ************************************ *********

consensus_5219#0      GTTTTACGTTGTTGTAATTGAAGCA-CATGATGTTGATGAATT-AGATATTTTTTTATTT 418
consensus_5219#1      GTTTAACGTTGTTGTAATTGATGCAACATGATGTTGATGAATTGAGATAATTTTATAATT 126
                      **** **************** *** ***************** ***** **** ** **

consensus_5219#0      GGACAGGTAATTCACCAAAATATAAAACGGCCAGTCAAATTGCATTTTTACTCTACAATA 478
consensus_5219#1      G----------------------------------------------------------- 127
                      *                                                           

consensus_5219#0      TGATAGAAACCCCCCTATGAGAAATGTTGTTCTCTTTTGTTAACATGTTTTGCTGTTTGA 538
consensus_5219#1      ------------------------------------------------------------
                                                                                  

consensus_5219#0      CTGTAAAATAAATGTTCCA 557
consensus_5219#1      -------------------