These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5220#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 419 fasta sequence [CTCACCAACGGCGCACAAAACGTAAGGTTTTTTGTATGTTTGTCTATTCC-TTGAATAGACTTACAGATATTCCCCCATAGGAGTAGGGAAGTTACTCAATGGATTATAGCCGCGTAAAAATCCGATGAGTTATCTGTGAGACAAGAGCTTTCAGGT-TAACTTACATTTCTAATAGTTCGAGAACTAATTAGTTCTCGTCACATTAATATGACTTTGAGCCAAGTGATAATACTATGTAGACACCAATCACATAATGAGACTTTACTTTATACTCTGGTACTTAGGAGCACTTTAGTTATGCAGATATTGATAGCTGGAAGACCTACATTGCGGATGGGATAAAGTATGTACAGTTCGGACTTACTTAGTTTGAGGAACATCGCTTAACCGAAATCCTTGTTCTAAATTTACAGACCCCC] [+] EMBL BG930232 [CTCACCAACGGCGCACAAAACGTAAGGTTTTTTGTATGTTTGTCTATTCC TTGAATAGACTTACAGATATTCCCCCATAGGAGTAGGGAAGTTACTCAATGGATTATAGCCGCGTAAAAATCCGATGAGTTATCTGTGAGACAAGAGCTTTCAGGT TAACTTACATTTCTAATAGTTCGAGAACTAATTAGTTCTCGTCACATTAATATGACTTTGAGCCAAGTGATAATACTATGTAGACACCAATCACATAATGAGACTTTACTTTATACTCTGGTACTTAGGAGCACTTTAGTTATGCAGATATTGATAGCTGGAAGACCTACATTGCGGATGGGATAAAGTATGTACAGTTCGGACTTACTTAGTTTGAGGAACATCGCTTAACCGAAATCCTTGTTCTAAATTTACAGACCCCC] [+] EMBL CD158338 [ AACGACGCACAAAACGTAAGGTTTTTTGTATGTTTGTCTATTCCTTTGAATAGACTTACAGATATTCCCCCATAGGAGTAGGGAAGTTACTCAATGGATTATAGCCGCGTAAAAATCCGATGAGTTATCTGTGAGACAAGAGCTTTCAGGTCTAACTTACATTTCTAATAGTTCGAGAACTA ] consensusID : consensus_5220#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 193 fasta sequence [AACGACGCACAAAACGTAAGGTTTTTTGTATGTTTGTCTATTCCTTTGAATAGACTTACAGATATTCCCCCATAGGAGTAGGGAAGTTACTCAATGGATTATAGCCGCGTAAAAATCCCGATGGAGGTTATCTGGNTGAGACAAGAAGCTTTCANNGGTCTAACTTACNNATTTCTAATAGTTCGAGAAACTA] [+] EMBL CD158431 [AACGACGCACAAAACGTAAGGTTTTTTGTATGTTTGTCTATTCCTTTGAATAGACTTACAGATATTCCCCCATAGGAGTAGGGAAGTTACTCAATGGATTATAGCCGCGTAAAAATCCCGATGGAGGTTATCTGGNTGAGACAAGAAGCTTTCANNGGTCTAACTTACNNATTTCTAATAGTTCGAGAAACTA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5220#0 CTCACCAACGGCGCACAAAACGTAAGGTTTTTTGTATGTTTGTCTATTCCTT-GAATAGA 59 consensus_5220#1 ------AACGACGCACAAAACGTAAGGTTTTTTGTATGTTTGTCTATTCCTTTGAATAGA 54 **** ***************************************** ******* consensus_5220#0 CTTACAGATATTCCCCCATAGGAGTAGGGAAGTTACTCAATGGATTATAGCCGCGTAAAA 119 consensus_5220#1 CTTACAGATATTCCCCCATAGGAGTAGGGAAGTTACTCAATGGATTATAGCCGCGTAAAA 114 ************************************************************ consensus_5220#0 ATCC-GATGA--GTTATCTG--TGAGACAAGA-GCTTTCAGG---TTAACTTACAT--TT 168 consensus_5220#1 ATCCCGATGGAGGTTATCTGGNTGAGACAAGAAGCTTTCANNGGTCTAACTTACNNATTT 174 **** **** ******** ********** ******* ******** ** consensus_5220#0 CTAATAGTTCGAGAACTAATTAGTTCTCGTCACATTAATATGACTTTGAGCCAAGTGATA 228 consensus_5220#1 CTAATAGTTCGAGAAACTA----------------------------------------- 193 *************** * consensus_5220#0 ATACTATGTAGACACCAATCACATAATGAGACTTTACTTTATACTCTGGTACTTAGGAGC 288 consensus_5220#1 ------------------------------------------------------------ consensus_5220#0 ACTTTAGTTATGCAGATATTGATAGCTGGAAGACCTACATTGCGGATGGGATAAAGTATG 348 consensus_5220#1 ------------------------------------------------------------ consensus_5220#0 TACAGTTCGGACTTACTTAGTTTGAGGAACATCGCTTAACCGAAATCCTTGTTCTAAATT 408 consensus_5220#1 ------------------------------------------------------------ consensus_5220#0 TACAGACCCCC 419 consensus_5220#1 ----------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||