cluster # 523

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Schistosoma mansoni
cluster # 523 cluster # 523 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_523#0 length = 464 sequences # 1

consensus_523#1 length = 213 sequences # 1

consensusID : consensus_523#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 464
fasta sequence

                              [TGAATTGGAGTGTACTGACTAGACGGGAGTATAGTTTTTGTGGCGGCGACAAGAGTGGTTGGTTGATGAGTTTCAGGAGCGAAGACGGTGGTGTTGGTTTGGCGATGGAGAGAGTGGACTGTGAAGAGGTGTAGTTGTATCGAGAGATGTGAGCGAGCGAGTGTATTTTTGAATTGGAGTGTACTGACTAGACGGGAGTATAGTTTTTGTGGCGGCGACAAGAGTGGTTGGTTGATGAGTTTCAGGAGCGAAGACGGTGGTGTTGGTTTGGCGATGGAGAGAGTGGACTGTGAAGAGGTGTAGTTGTATCGAGAGATGTGAGCGAGCGAGTGTATTTTTGAATTGGAGTGTACTGACTAGACGGGAGTATAGTTTTTGTGGCGGCGGCGGTGGCGGCGACAAGAGTGGTTGGTTGATGATTTTCAGGAGCGAAGACGGTGGTGTTGGTTTGGCGATGGATACAG]

[+] EMBL CD194801             [TGAATTGGAGTGTACTGACTAGACGGGAGTATAGTTTTTGTGGCGGCGACAAGAGTGGTTGGTTGATGAGTTTCAGGAGCGAAGACGGTGGTGTTGGTTTGGCGATGGAGAGAGTGGACTGTGAAGAGGTGTAGTTGTATCGAGAGATGTGAGCGAGCGAGTGTATTTTTGAATTGGAGTGTACTGACTAGACGGGAGTATAGTTTTTGTGGCGGCGACAAGAGTGGTTGGTTGATGAGTTTCAGGAGCGAAGACGGTGGTGTTGGTTTGGCGATGGAGAGAGTGGACTGTGAAGAGGTGTAGTTGTATCGAGAGATGTGAGCGAGCGAGTGTATTTTTGAATTGGAGTGTACTGACTAGACGGGAGTATAGTTTTTGTGGCGGCGGCGGTGGCGGCGACAAGAGTGGTTGGTTGATGATTTTCAGGAGCGAAGACGGTGGTGTTGGTTTGGCGATGGATACAG]




>consensus_523#0
TGAATTGGAGTGTACTGACTAGACGGGAGTATAGTTTTTGTGGCGGCGACAAGAGTGGTT
GGTTGATGAGTTTCAGGAGCGAAGACGGTGGTGTTGGTTTGGCGATGGAGAGAGTGGACT
GTGAAGAGGTGTAGTTGTATCGAGAGATGTGAGCGAGCGAGTGTATTTTTGAATTGGAGT
GTACTGACTAGACGGGAGTATAGTTTTTGTGGCGGCGACAAGAGTGGTTGGTTGATGAGT
TTCAGGAGCGAAGACGGTGGTGTTGGTTTGGCGATGGAGAGAGTGGACTGTGAAGAGGTG
TAGTTGTATCGAGAGATGTGAGCGAGCGAGTGTATTTTTGAATTGGAGTGTACTGACTAG
ACGGGAGTATAGTTTTTGTGGCGGCGGCGGTGGCGGCGACAAGAGTGGTTGGTTGATGAT
TTTCAGGAGCGAAGACGGTGGTGTTGGTTTGGCGATGGATACAG

consensusID : consensus_523#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 213
fasta sequence

                              [GCCACCGCCGCCGCCACAAAAACTATACTCCCGTCTAGTCAGTACACTCCAATTCAAAAATACACTCGCTACTGTTATTAACAATGGATATTGTGGGTGTTTTTGTGGGTTTTGAGACTACGGGCAGCGGAGTTGGTTGAGTTGAGGTAGATCTAGTGGTATTTGCAGCTAGGGGACTAGTCACAGATTTGCCAGTTCTACGAGGAGTTCTGT]

[+] EMBL CD185625             [GCCACCGCCGCCGCCACAAAAACTATACTCCCGTCTAGTCAGTACACTCCAATTCAAAAATACACTCGCTACTGTTATTAACAATGGATATTGTGGGTGTTTTTGTGGGTTTTGAGACTACGGGCAGCGGAGTTGGTTGAGTTGAGGTAGATCTAGTGGTATTTGCAGCTAGGGGACTAGTCACAGATTTGCCAGTTCTACGAGGAGTTCTGT]




>consensus_523#1
GCCACCGCCGCCGCCACAAAAACTATACTCCCGTCTAGTCAGTACACTCCAATTCAAAAA
TACACTCGCTACTGTTATTAACAATGGATATTGTGGGTGTTTTTGTGGGTTTTGAGACTA
CGGGCAGCGGAGTTGGTTGAGTTGAGGTAGATCTAGTGGTATTTGCAGCTAGGGGACTAG
TCACAGATTTGCCAGTTCTACGAGGAGTTCTGT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_523#0      TGAATTGGAGTGTACTGACTAGACGGGAGTATAGTTTTTGTGGCGGCGACAAGAGTGGTT 60
consensus_523#1      ------------------------GCCACCGCCGCCGCCACAAAAACTATACTCCCGTCT 36
                                             *  *     *            * * *     *  *

consensus_523#0      GGTTGATGAGTTTCAGGAGCGAAGACGGTGGTGTTGGTTTGGCGATGGAGAGAGTGGACT 120
consensus_523#1      AGTCAGTACACTCCA--ATTCAAAA--ATACACTCGCTACTGTTATTAACAATGGATATT 92
                      **   *    * **  *   ** *   *    * * *   *  **  * *  *   * *

consensus_523#0      GTGAAGAGGTGTAGTTGTATCGAGAGATGTGAGCGAGCGAGTGTATTTTTGAATTGGAGT 180
consensus_523#1      GTGGGTGTTTTTGTGGGTTTTGAGAC-TACGGGCAGCGGAGT---TGGTTGAGTTGAGGT 148
                     ***      * *    ** * ****  *  * **    ****   *  **** ***  **

consensus_523#0      GTACTGACTAGACGGGAGTATAGTTTTTGTGGCGGCGACAAGAGTGGTTGGTTGATGAGT 240
consensus_523#1      AGAT---CTAG---------TGGTATTTGCAGCTAGGGGACTAGTCACAGATTTGCCAGT 196
                       *    ****         * ** ****  **   *  *  ***    * **    ***

consensus_523#0      TTCAGGAGCGAAGACGGTGGTGTTGGTTTGGCGATGGAGAGAGTGGACTGTGAAGAGGTG 300
consensus_523#1      TCTACGAG-GAGTTCTGT------------------------------------------ 213
                     *  * *** **   * **                                          

consensus_523#0      TAGTTGTATCGAGAGATGTGAGCGAGCGAGTGTATTTTTGAATTGGAGTGTACTGACTAG 360
consensus_523#1      ------------------------------------------------------------
                                                                                 

consensus_523#0      ACGGGAGTATAGTTTTTGTGGCGGCGGCGGTGGCGGCGACAAGAGTGGTTGGTTGATGAT 420
consensus_523#1      ------------------------------------------------------------
                                                                                 

consensus_523#0      TTTCAGGAGCGAAGACGGTGGTGTTGGTTTGGCGATGGATACAG 464
consensus_523#1      --------------------------------------------