cluster # 5231

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Schistosoma mansoni
cluster # 5231 cluster # 5231 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5231#0 length = 431 sequences # 1

consensus_5231#1 length = 354 sequences # 2

consensusID : consensus_5231#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 431
fasta sequence

                              [TGGTATTGAGCAAACGTGGAAAATGGGCCATATTCATTTCACGAGATACTGATCCAAATCAAACGTATAAGTGCGGATCTATCATATTGGTTGGTTCAGCTGAAGACGCGAATAACCATTCATCCAGAAAATGGAAAAGTAGTGACCTCATATCGTGACCTGAAAAATTTATATCAACAGATATATTTTGAGTATGAGAACAGTTTATACACATGTTTAACAAAGAAAGGAAATGAGTCCACAAACATTCCCCAAGACTGATTATACTTAAAGGGAAATGATCCATAAATGTTTATGGACAAATACAAAGTTATACATTTACTTTACTAAACTCCTCAAAACCGGTAAGTATACTTTCGTGATTCGCACACTTTGCGAAAGCACTGAGATATGAAACGAAAAGACATATTTTACGGGAAAACGTGAAAGAT]

[+] EMBL CD187704             [TGGTATTGAGCAAACGTGGAAAATGGGCCATATTCATTTCACGAGATACTGATCCAAATCAAACGTATAAGTGCGGATCTATCATATTGGTTGGTTCAGCTGAAGACGCGAATAACCATTCATCCAGAAAATGGAAAAGTAGTGACCTCATATCGTGACCTGAAAAATTTATATCAACAGATATATTTTGAGTATGAGAACAGTTTATACACATGTTTAACAAAGAAAGGAAATGAGTCCACAAACATTCCCCAAGACTGATTATACTTAAAGGGAAATGATCCATAAATGTTTATGGACAAATACAAAGTTATACATTTACTTTACTAAACTCCTCAAAACCGGTAAGTATACTTTCGTGATTCGCACACTTTGCGAAAGCACTGAGATATGAAACGAAAAGACATATTTTACGGGAAAACGTGAAAGAT]




>consensus_5231#0
TGGTATTGAGCAAACGTGGAAAATGGGCCATATTCATTTCACGAGATACTGATCCAAATC
AAACGTATAAGTGCGGATCTATCATATTGGTTGGTTCAGCTGAAGACGCGAATAACCATT
CATCCAGAAAATGGAAAAGTAGTGACCTCATATCGTGACCTGAAAAATTTATATCAACAG
ATATATTTTGAGTATGAGAACAGTTTATACACATGTTTAACAAAGAAAGGAAATGAGTCC
ACAAACATTCCCCAAGACTGATTATACTTAAAGGGAAATGATCCATAAATGTTTATGGAC
AAATACAAAGTTATACATTTACTTTACTAAACTCCTCAAAACCGGTAAGTATACTTTCGT
GATTCGCACACTTTGCGAAAGCACTGAGATATGAAACGAAAAGACATATTTTACGGGAAA
ACGTGAAAGAT

consensusID : consensus_5231#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 354
fasta sequence

                              [GATGTACAGTTACTATTCCTGGGGTAGTAACCAAACAGAAGCATTTGAACAAATTGCTATGGCGATGTTCAACTATATGACAACAAACTACGACTCAGTGTATNCCTCACAAAGATTTGAAATTGAAGCTAATGGTCACGATATGATGTCACTACTTTTCCATTTTCTGGATGAATGGTTATTCGCGTTTTCAGCTGAACCATTTTTCATTCCGCGGATTGTTAAAATAACAGAATTTGATAAGGAGAATTTTCACATTAAATCATCTGGTTGGGGTGAACCTTTTGACATTTCAAAACATCCTCAGGGTACTGAAGTGAAAGCTATCACTTATTCAAATATGCAAATTCATGA]

[+] EMBL CD192224             [GATGTACAGTTACTATTCCTGGGGTAGTAACCAAACAGAAGCATTTGAACAAATTGCTATGGCGATGTTCAACTATATGACAACAAACTACGACTCAGTGTATNCCTCACAAAGATTTGAAATTGAAGCTAATGG                                                                                                                                                                                                                           ]
[+] EMBL CD114725             [                        TAGTAACCAAACAGAAGCATTTGAACAAATTGCTATGGCGATGTTCAACTATATGACAACAAACTACGACTCAGTGGATACCTCACAAAGATTTGAAATTGAAGCTAATGGTCACGATATGATGTCACTACTTTTCCATTTTCTGGATGAATGGTTATTCGCGTTTTCAGCTGAACCATTTTTCATTCCGCGGATTGTTAAAATAACAGAATTTGATAAGGAGAATTTTCACATTAAATCATCTGGTTGGGGTGAACCTTTTGACATTTCAAAACATCCTCAGGGTACTGAAGTGAAAGCTATCACTTATTCAAATATGCAAATTCATGA]




>consensus_5231#1
GATGTACAGTTACTATTCCTGGGGTAGTAACCAAACAGAAGCATTTGAACAAATTGCTAT
GGCGATGTTCAACTATATGACAACAAACTACGACTCAGTGTATNCCTCACAAAGATTTGA
AATTGAAGCTAATGGTCACGATATGATGTCACTACTTTTCCATTTTCTGGATGAATGGTT
ATTCGCGTTTTCAGCTGAACCATTTTTCATTCCGCGGATTGTTAAAATAACAGAATTTGA
TAAGGAGAATTTTCACATTAAATCATCTGGTTGGGGTGAACCTTTTGACATTTCAAAACA
TCCTCAGGGTACTGAAGTGAAAGCTATCACTTATTCAAATATGCAAATTCATGA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5231#0      TGGTATTGAGCAAACGTGGAAAATGGGCCATATTCATTTCACGAGATACTGATCCAAATC 60
consensus_5231#1      ---------------------GATGTACAGTTACTATTCC-TGGGGTAGTAACC--AAAC 36
                                            ***  *  *    *** *  * * ** * * *  ** *

consensus_5231#0      AAACGTATAAGTGCGGATCTATCATATTGGTTGGTTCAGCTGAA-GACG-CGAATAACCA 118
consensus_5231#1      AGAAGCATTTGAACAAAT-TGCTATGGCGAT--GTTCAACTATATGACAACAAACTACGA 93
                      * * * **  *  *  ** *   **   * *  ***** **  * ***  * **  ** *

consensus_5231#0      TTCATCCAGAAAATGGAAAAGTAGTGACCTCATATCGTGACCTGAAAAATTTATATCAAC 178
consensus_5231#1      CTCAGTGTATNCCTCACAAAGATTTGAAATTGAAGCTAATGGTCACGATATGATGTCACT 153
                       ***         *   ****   ***  *   * *      * *  *  * ** ***  

consensus_5231#0      AGATATATTTTGAGTATGAGAACAGTTTATACACATGTTTAACAAAGAAAGGAAATGAGT 238
consensus_5231#1      ACTTTTCCATTTTCTGGATGAATGGTT-ATTCGCGTTTTCAGCTGAACCATTTT-TCATT 211
                      *  * *   **   *    ***  *** ** * * * ** * *  *   *     * * *

consensus_5231#0      CCACAAACATTCCCCAAGACTGATTATACTTAAAGGGAAATGATCCATAAATGTTTATGG 298
consensus_5231#1      CCGCGGATTGTTAAAATAACAGAATTTGAT-AAGGAGAATTTTCACATTAAATCATCTGG 270
                      ** *  *   *    *  ** ** * *  * ** * *** *    *** **    * ***

consensus_5231#0      ACAAATACAAAGTTATACATTTACTTTACTAAAC-TCCTCAAAACCGGTAAGTATACTTT 357
consensus_5231#1      TTGGGGTGAACCTT-----TTGACATTTCAAAACATCCTCAGGGTACTGAAGTGAAAGCT 325
                              **  **     ** ** ** * **** ******        ****  *   *

consensus_5231#0      CGTGATTCGCACACTTTGCGAAAGCACTGAGATATGAAACGAAAAGACATATTTTACGGG 417
consensus_5231#1      ATCACTTATTCAAATATGCAAATTCA-TGA------------------------------ 354
                           **     * * *** **  ** ***                              

consensus_5231#0      AAAACGTGAAAGAT 431
consensus_5231#1      --------------