cluster # 5239

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Schistosoma mansoni
cluster # 5239 cluster # 5239 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5239#0 length = 664 sequences # 2

consensus_5239#1 length = 377 sequences # 1

consensusID : consensus_5239#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 664
fasta sequence

                              [CACAGAACATATGATATGTAATTATTTTCCTGATAAAAAGACAAGGTGTAGTTTATTTTTTCATTTATTATCGATATGTTGTTATAAAGCAAATCCCATAGACATCTATGGCGGACTAAATACTCGGAAACGATGATTTAATTGTTCCTGAACGTGAAGACGACTTGCATTGGTAAATGCACCGTCGCCCGCAAGCTTTTGGCAGCAAAAAACTCGCCGAATGCGATTATGAAGCAGAGCCATACCACACATTAGACATGGTTCAAGTGAAAAGTATGCATCGAAACCTGTACACAAGTAAGAATCAGAGTACTGATTTCCTGTATTCCCTTTTAATTTAGCAACAGCTGACACAGCAAGTAATGCTGCATGATCTAACCAAGATATATCTGATGTTGTCGTAGGTGTAGTTGACTCTGTTAATGCAATATTCGATTCTGGATCGACTATGATAACTGCACAAGCCGGACCACCAACGCCTGCACATGATTGTGGATGTATATTTTTTAGTTCTTGTGCTTGTTTCGACAAGGTGGAAACACGTTCGAGCCATAATGAATGTTTTTTTAGCTCTAATTCTGAAAAACATGACAACGACAAGCTCCGTCCAACGTTCACTAATTCCTCGAGTTCGGGACAGGCCCCGTAAGTGGATGGCCAACGA]

[+] EMBL CD140883             [CACAGAACATATGATATGTAATTATTTTCCTGATAAAAAGACAAGGTGTAGTTTATTTTTTCATTTATTATCGATATGTTGTTATAAAGCAAATCCCATAGACATCTATGGCGGACTAAATACTCGGAAACGATGATTTAATTGTTCCTGAACGTGAAGACGACTTGCATTGGTAAATGCACCGTCGCCCGCAAGCTTTTGGCAGCAAAAAACTCGCCGAATGCGATTATGAAGCAGAGCCATACCACACATTAGACATGGTTCAAGTGAAAAGTATGCATCGAAACCTGTACACAAGTAAGAATCAGAGTACTGATTTCCTGTATTCCCTTTTAATTTAGCAACAGCTGACACAGCAA                                                                                                                                                                                                                                                                                                                 ]
[+] EMBL CD073108             [                                                                      TCGATATGTTGTTATAAAGCAAATCCCATAGACATCTATGGCGGACTAAATACTCGGAAACGATGATTTAATTGTTCCTGAACGTGAAGACGACTTGCATTGGTAAATGCACCGTCGCCCGCAAGCTTTTGGCAGCAAAAAACTCGCCGAATGCGATTATGAAGCAGAGCCATACCACACATTAGACATGGTTCAAGTGAAAAGTATGCATCGAAACCTGTACACAAGTAAGAATCAGAGTACTGATTTCCTGTATTCCCTTTTAATTTAGCAACAGCTGACACAGCAAGTAATGCTGCATGATCTAACCAAGATATATCTGATGTTGTCGTAGGTGTAGTTGACTCTGTTAATGCAATATTCGATTCTGGATCGACTATGATAACTGCACAAGCCGGACCACCAACGCCTGCACATGATTGTGGATGTATATTTTTTAGTTCTTGTGCTTGTTTCGACAAGGTGGAAACACGTTCGAGCCATAATGAATGTTTTTTTAGCTCTAATTCTGAAAAACATGACAACGACAAGCTCCGTCCAACGTTCACTAATTCCTCGAGTTCGGGACAGGCCCCGTAAGTGGATGGCCAACGA]




>consensus_5239#0
CACAGAACATATGATATGTAATTATTTTCCTGATAAAAAGACAAGGTGTAGTTTATTTTT
TCATTTATTATCGATATGTTGTTATAAAGCAAATCCCATAGACATCTATGGCGGACTAAA
TACTCGGAAACGATGATTTAATTGTTCCTGAACGTGAAGACGACTTGCATTGGTAAATGC
ACCGTCGCCCGCAAGCTTTTGGCAGCAAAAAACTCGCCGAATGCGATTATGAAGCAGAGC
CATACCACACATTAGACATGGTTCAAGTGAAAAGTATGCATCGAAACCTGTACACAAGTA
AGAATCAGAGTACTGATTTCCTGTATTCCCTTTTAATTTAGCAACAGCTGACACAGCAAG
TAATGCTGCATGATCTAACCAAGATATATCTGATGTTGTCGTAGGTGTAGTTGACTCTGT
TAATGCAATATTCGATTCTGGATCGACTATGATAACTGCACAAGCCGGACCACCAACGCC
TGCACATGATTGTGGATGTATATTTTTTAGTTCTTGTGCTTGTTTCGACAAGGTGGAAAC
ACGTTCGAGCCATAATGAATGTTTTTTTAGCTCTAATTCTGAAAAACATGACAACGACAA
GCTCCGTCCAACGTTCACTAATTCCTCGAGTTCGGGACAGGCCCCGTAAGTGGATGGCCA
ACGA

consensusID : consensus_5239#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 377
fasta sequence

                              [CTCCAAAGGTGCTAAGTGACAAGTCATACAACTCCATCGTCTCATCATCATACAACGCTAAACATAGTAATAACAATATAATATGAAACCCGTTTAGCACATAAGTACACCGTTGGTATCATATATACATTGATGTCGAATATAAAAATTCTAAGGACCAAATAACCTACTTTTTTAGCTCTAATTCTGAAAAACATGACAACGACAAGCTCCGTCCAACGTTCACTAGTTCCTCGAGTTCGGGACAGGCCCGTAAAGTGGATGGCCAACCTAAAATAATTGGTTTATTAAGTGAATTTCTGAACGATGAAAATCTTTTCTCTTGTGATTCATTCGAAAATGAGTAAAGGAGCTGATGCTTACGAGTTATTGNAGCA]

[+] EMBL CD195611             [CTCCAAAGGTGCTAAGTGACAAGTCATACAACTCCATCGTCTCATCATCATACAACGCTAAACATAGTAATAACAATATAATATGAAACCCGTTTAGCACATAAGTACACCGTTGGTATCATATATACATTGATGTCGAATATAAAAATTCTAAGGACCAAATAACCTACTTTTTTAGCTCTAATTCTGAAAAACATGACAACGACAAGCTCCGTCCAACGTTCACTAGTTCCTCGAGTTCGGGACAGGCCCGTAAAGTGGATGGCCAACCTAAAATAATTGGTTTATTAAGTGAATTTCTGAACGATGAAAATCTTTTCTCTTGTGATTCATTCGAAAATGAGTAAAGGAGCTGATGCTTACGAGTTATTGNAGCA]




>consensus_5239#1
CTCCAAAGGTGCTAAGTGACAAGTCATACAACTCCATCGTCTCATCATCATACAACGCTA
AACATAGTAATAACAATATAATATGAAACCCGTTTAGCACATAAGTACACCGTTGGTATC
ATATATACATTGATGTCGAATATAAAAATTCTAAGGACCAAATAACCTACTTTTTTAGCT
CTAATTCTGAAAAACATGACAACGACAAGCTCCGTCCAACGTTCACTAGTTCCTCGAGTT
CGGGACAGGCCCGTAAAGTGGATGGCCAACCTAAAATAATTGGTTTATTAAGTGAATTTC
TGAACGATGAAAATCTTTTCTCTTGTGATTCATTCGAAAATGAGTAAAGGAGCTGATGCT
TACGAGTTATTGNAGCA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5239#0      CACAGAACATATGATATGTAATTATTTTCCTGATAAAAAGACAAGGTGTAGTTTATTTTT 60
consensus_5239#1      ------------------------------------------------------------
                                                                                  

consensus_5239#0      TCATTTATTATCGATATGTTGTTATAAAGCAAATCCCATAGACATCTATGGCGGACTAAA 120
consensus_5239#1      ------------------------------------------------------------
                                                                                  

consensus_5239#0      TACTCGGAAACGATGATTTAATTGTTCCTGAACGTGA-AGACGACTTGCATTGGTAAATG 179
consensus_5239#1      -------------------------CTCCAAAGGTGCTAAGTGACAAGTCATA-CAACTC 34
                                                 *  ** ***  *   ***  *   *   ** * 

consensus_5239#0      CACCGTCGCCCGCAAGCTTTTGGCAGCAAAAAACTCGCCGAATGCGATTATGAAGCAGAG 239
consensus_5239#1      CATCGTCTC-----ATCATCATACAACGCTAAACATAGTAATAACAATATAATATGAAAC 89
                      ** **** *     * * *    ** *   ****      *   * **     *  * * 

consensus_5239#0      CCATACCACACATTAG-ACATGGTTCAAGTGAAAAGTATGCATCGAAACCTGTACACAAG 298
consensus_5239#1      CCGTTTAGCACATAAGTACACCGTT--GGTATCATATATACATTGATGTC-GAATATAA- 145
                      ** *    ***** ** ***  ***   **   *  *** *** **   * * * * ** 

consensus_5239#0      TAAGAATCAGAGTACTGATTTCCTGTATTCCCTTTTAATTTAGCAACAGCTGACACAGCA 358
consensus_5239#1      --AAATTCTAAGGACCAAATAACC---TACTTTTTTAGCT---CTAATTCTGAAAAACAT 197
                        * * **  ** **  * *  *    * *  *****  *   * *   **** * *   

consensus_5239#0      AGTAATGCTGCATGATCTAACCAAGATATATCTGATGTTGTCGTAGGTGTAGTTGACTCT 418
consensus_5239#1      GACAACG--ACAAGCTCCGTCCAACGTTCA-CTAGT-TCCTCG-AGTTCGGGACAGGCCC 252
                         ** *   ** * **   ****  *  * **  * *  *** ** *   *      * 

consensus_5239#0      GTTAATGCAATATTCGATTCTGGATCGACTATGATAACTGCACAAGCCGGACCACCAACG 478
consensus_5239#1      GTAAAGTGGATGGCCAAC----------CTAAAATAATTGGTTTATTAAG----TGAATT 298
                      ** **    **   * *           ***  **** **    *    *      **  

consensus_5239#0      CCTGCACATGATTGTGGATGTATATTTTTTAGTTCTTGTGCTTGTTTCGACAAGGTGGAA 538
consensus_5239#1      TCTGAAC---------GATGAAAATCTTTT--CTCTTGTGATTCATTCGAAAATGAGTAA 347
                       *** **         **** * ** ****   ******* **  ***** ** * * **

consensus_5239#0      ACACGTTCGAGCCATAATGAATGTTTTTTTAGCTCTAATTCTGAAAAACATGACAACGAC 598
consensus_5239#1      AGGAGCTGATGC--TTACGA--GTTATTGNAGCA-------------------------- 377
                      *   * *   **  * * **  *** **  ***                           

consensus_5239#0      AAGCTCCGTCCAACGTTCACTAATTCCTCGAGTTCGGGACAGGCCCCGTAAGTGGATGGC 658
consensus_5239#1      ------------------------------------------------------------
                                                                                  

consensus_5239#0      CAACGA 664
consensus_5239#1      ------