cluster # 5241

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Schistosoma mansoni
cluster # 5241 cluster # 5241 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5241#0 length = 252 sequences # 2

consensus_5241#1 length = 225 sequences # 1

consensusID : consensus_5241#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 252
fasta sequence

                              [ATGGGCAGAACTGTAACAGCTCCTCGTCGTCAAAATCCTGCAATAAACTGTTCCTCCATGAGTTTGGCAGGATCCAGCTGTATAATAATACTGGAATTTGTAAACTGTTCGACAACAGTGATCACTTTTTTTCATGCACTATCATGTTCTGAGATAAAGATAACATTTTCCAGAAGACGAACCATGTTATGTGAGACCCGATTTCTGATAGGTAAAATGGGACTTCACCAATCTTAAGCTGGGTACTACAAC]

[-] EMBL CD077684             [ATGGGCAGAACTGTAACAGCTCCTCGTCGTCAAAATCCTGCAATAAACTGTTCCTCCATGAGTTTGGCAGGATCCAGCTGTATAATAATACTGGAATTTGTAAACTGTTCGACAACAGTGATCACTTTTTTTCATGCACTA                                                                                                               ]
[+] EMBL CD149868             [                 tGCTCCTCGTCGACAAAATCCTGCAATAAACTGTTCCTCCATGAGTTTGGCAGGATCCAGCTGTATAATAATACTGGAATTTTTAAACTGTTCGACAACAGTGATCACATTTTTTGCTGCACTTTCATGTTCTGAGATAAAGATAACATTTTCCAGAAGACGAACCATGTTATGTGAGACCCGATTTCTGATAGGTAAAATGGGACTTCACCAATCTTAAGCTGGGTACTACAAC]




>consensus_5241#0
ATGGGCAGAACTGTAACAGCTCCTCGTCGTCAAAATCCTGCAATAAACTGTTCCTCCATG
AGTTTGGCAGGATCCAGCTGTATAATAATACTGGAATTTGTAAACTGTTCGACAACAGTG
ATCACTTTTTTTCATGCACTATCATGTTCTGAGATAAAGATAACATTTTCCAGAAGACGA
ACCATGTTATGTGAGACCCGATTTCTGATAGGTAAAATGGGACTTCACCAATCTTAAGCT
GGGTACTACAAC

consensusID : consensus_5241#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 225
fasta sequence

                              [CGACGGGCGGCTGTGAAAAGACCTGACTTTTCTACCGTGCCAGATTTAAATGAGCCACTCCTCGGGAGTAGTGTTGTAGTACCCAGCTTAAGATTGGTGAAGTCCCATTTTACCTAAACATGAAAGTGCAGCAAAAAATGTGATCACTGTTGTCGAACAGTTTAAAAATTCCAGTATTGTTATACAGCTGGATCCTGCCAAACTCATGGAGGAACAGTTTATTGC]

[+] EMBL CD149746             [CGACGGGCGGCTGTGAAAAGACCTGACTTTTCTACCGTGCCAGATTTAAATGAGCCACTCCTCGGGAGTAGTGTTGTAGTACCCAGCTTAAGATTGGTGAAGTCCCATTTTACCTAAACATGAAAGTGCAGCAAAAAATGTGATCACTGTTGTCGAACAGTTTAAAAATTCCAGTATTGTTATACAGCTGGATCCTGCCAAACTCATGGAGGAACAGTTTATTGC]




>consensus_5241#1
CGACGGGCGGCTGTGAAAAGACCTGACTTTTCTACCGTGCCAGATTTAAATGAGCCACTC
CTCGGGAGTAGTGTTGTAGTACCCAGCTTAAGATTGGTGAAGTCCCATTTTACCTAAACA
TGAAAGTGCAGCAAAAAATGTGATCACTGTTGTCGAACAGTTTAAAAATTCCAGTATTGT
TATACAGCTGGATCCTGCCAAACTCATGGAGGAACAGTTTATTGC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5241#0      ATGGGCAGAACTGTAACAGCTCCTCGTCGTCAAAATCCTGCAATAAACTGTTCCTCCATG 60
consensus_5241#1      ----------------CGACGGGCGGCTGTGAAAAGACCTGACTTTTCTACCGTGCCA-G 43
                                      *  *     *  ** ****  *   * *   **      *** *

consensus_5241#0      AGTTTGGCAGGATCCAGCTGTATAATAATACTGGAATTTGTAAACTGTTCGACAACAGTG 120
consensus_5241#1      ATTTAAATGAGCCACTCCTCGGGAGTAGTGTTGTA----GTACCCAGCTTAAGATTGGTG 99
                      * **      *   *  **    * ** *  ** *    ***  * * *  * *   ***

consensus_5241#0      ATCACTTTTTTT-CATGCACTATCATGTTCTGAGATAAAGATAACATTTTCCAGAAGACG 179
consensus_5241#1      AAGTCCCATTTTACCTAAACATGAAAGTGCAGCAAAAAATGTGA----TCACTGTTGTCG 155
                      *   *   **** * *  **    * ** * *  * ***  * *    *  * *  * **

consensus_5241#0      AACCATGTTATGTGAGACCCGATTTCTGATAGGTAAAATGGGACTTCACCAATCTTAAGC 239
consensus_5241#1      AACAGTTTAA----AAATTCCAGTATTGTTA--TACAGCTGGATCCTGCCAAACTCATGG 209
                      ***  * * *    * *  * * *  ** **  ** *   ***     **** ** * * 

consensus_5241#0      TGGG-TACTACAAC-- 252
consensus_5241#1      AGGAACAGTTTATTGC 225
                       **   * *  *