cluster # 525

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Schistosoma mansoni
cluster # 525 cluster # 525 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_525#0 length = 396 sequences # 1

consensus_525#1 length = 247 sequences # 1

consensusID : consensus_525#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 396
fasta sequence

                              [TTAGCCACGCTGGGAGGTGTTCACGAGCACGAAAATGTAAATTCCTAGAACTTCGACCAATATAACTTGCTCCACAGGAGCAGTCGAACTGATAAATACAAAATGAAGTGGTCATTCTAGGAACTTCATCTTTAAGCCTCGGTGTCACCATTGGACGCGTAGAAAACACCAAACGTAGTTCACCTGCGTTGAAAGATTTTTGGATAGATCTGCGTAATCTCTGAGCAAGTATTTCGCTAGCGGCATCCCCCCTGAATTGTAGGCGCATGAACAAGGACTTTTTCTTGACCGTTTGGAATTCGCCTATTTTCACTTTAAAGATCATATATTTAATTATAAACTTTCTGGGATACCCGTTCTCCCTCAGAACATTATGCAATGTGTTTAGCTCATTGT]

[+] EMBL CD200245             [TTAGCCACGCTGGGAGGTGTTCACGAGCACGAAAATGTAAATTCCTAGAACTTCGACCAATATAACTTGCTCCACAGGAGCAGTCGAACTGATAAATACAAAATGAAGTGGTCATTCTAGGAACTTCATCTTTAAGCCTCGGTGTCACCATTGGACGCGTAGAAAACACCAAACGTAGTTCACCTGCGTTGAAAGATTTTTGGATAGATCTGCGTAATCTCTGAGCAAGTATTTCGCTAGCGGCATCCCCCCTGAATTGTAGGCGCATGAACAAGGACTTTTTCTTGACCGTTTGGAATTCGCCTATTTTCACTTTAAAGATCATATATTTAATTATAAACTTTCTGGGATACCCGTTCTCCCTCAGAACATTATGCAATGTGTTTAGCTCATTGT]




>consensus_525#0
TTAGCCACGCTGGGAGGTGTTCACGAGCACGAAAATGTAAATTCCTAGAACTTCGACCAA
TATAACTTGCTCCACAGGAGCAGTCGAACTGATAAATACAAAATGAAGTGGTCATTCTAG
GAACTTCATCTTTAAGCCTCGGTGTCACCATTGGACGCGTAGAAAACACCAAACGTAGTT
CACCTGCGTTGAAAGATTTTTGGATAGATCTGCGTAATCTCTGAGCAAGTATTTCGCTAG
CGGCATCCCCCCTGAATTGTAGGCGCATGAACAAGGACTTTTTCTTGACCGTTTGGAATT
CGCCTATTTTCACTTTAAAGATCATATATTTAATTATAAACTTTCTGGGATACCCGTTCT
CCCTCAGAACATTATGCAATGTGTTTAGCTCATTGT

consensusID : consensus_525#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 247
fasta sequence

                              [TTAGCCACCTATTTACTAGTGATTACCTAAGATTGCTTAGCCACCCACAACTTAGAAGCATTTAAATAATCAACATGACTAGGAACAGGAACAGTTCATCACTTTCGTAACACGCCCACATGGACCTCATTATCCCTATTTACACGCATTACCGACCACCCAAGGACTCCCCACAAAATAAATTATTATTACAAACCCTCTACCAACTGATAAAATCCCACCAATTTCTCCTTACTAATTTTAACCC]

[+] EMBL AW146485             [TTAGCCACCTATTTACTAGTGATTACCTAAGATTGCTTAGCCACCCACAACTTAGAAGCATTTAAATAATCAACATGACTAGGAACAGGAACAGTTCATCACTTTCGTAACACGCCCACATGGACCTCATTATCCCTATTTACACGCATTACCGACCACCCAAGGACTCCCCACAAAATAAATTATTATTACAAACCCTCTACCAACTGATAAAATCCCACCAATTTCTCCTTACTAATTTTAACCC]




>consensus_525#1
TTAGCCACCTATTTACTAGTGATTACCTAAGATTGCTTAGCCACCCACAACTTAGAAGCA
TTTAAATAATCAACATGACTAGGAACAGGAACAGTTCATCACTTTCGTAACACGCCCACA
TGGACCTCATTATCCCTATTTACACGCATTACCGACCACCCAAGGACTCCCCACAAAATA
AATTATTATTACAAACCCTCTACCAACTGATAAAATCCCACCAATTTCTCCTTACTAATT
TTAACCC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_525#0      TTAGCCACGCTGGGAGGTGTTCACGAGCACGAAAATGTAAATTCCTAGAACTTCGACCAA 60
consensus_525#1      TTAGCCACC--------TATTTACTAGTGATTACCTAAGATTGCTTAG-----CCACCCA 47
                     ********         * ** ** **     *  *   * * * ***     * *** *

consensus_525#0      TATAACTTGCTCCACAGGAGCAGTCGAACTGA-TAAATACAAAATGAAGTGGTCATTCTA 119
consensus_525#1      CA-ACTTAGAAGCATTTAAATAATCAACATGACTAGGAACAGGAACAGTTCATCACTTTC 106
                      * *  * *   **    *  * ** *  *** **   ***  *  *  *  *** * * 

consensus_525#0      GGAACTTCATCTT-TAAGCCTCGGTGTCACCATTGGACGCGTAGAAAACACCAAACGTAG 178
consensus_525#1      GTAACACGCCCACATGGACCTCATTATCCCTATTT-ACACGCATTACCGACCACCCAAGG 165
                     * ***     *   *   ****  * ** * ***  ** ** *  *   ****  *   *

consensus_525#0      TTCACCTGCGTTGAAAGATTTTTGGATAGATCTGCGTAATCTCTGAGCAAGTATTTCGCT 238
consensus_525#1      ACTCCCCACAAAATAAATTATTATTACAAACCCTC-TACCAACTGATAAA--ATCCCACC 222
                         **  *     **  * **   * * * *  * **    ****  **  **  * * 

consensus_525#0      AGCGGCATCCCCCCTGAATTGTAGGCGCATGAACAAGGACTTTTTCTTGACCGTTTGGAA 298
consensus_525#1      AATTTC-TCCTTACT-AATTTTAACCC--------------------------------- 247
                     *    * ***   ** **** **  *                                  

consensus_525#0      TTCGCCTATTTTCACTTTAAAGATCATATATTTAATTATAAACTTTCTGGGATACCCGTT 358
consensus_525#1      ------------------------------------------------------------
                                                                                 

consensus_525#0      CTCCCTCAGAACATTATGCAATGTGTTTAGCTCATTGT 396
consensus_525#1      --------------------------------------