These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_525#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 396 fasta sequence [TTAGCCACGCTGGGAGGTGTTCACGAGCACGAAAATGTAAATTCCTAGAACTTCGACCAATATAACTTGCTCCACAGGAGCAGTCGAACTGATAAATACAAAATGAAGTGGTCATTCTAGGAACTTCATCTTTAAGCCTCGGTGTCACCATTGGACGCGTAGAAAACACCAAACGTAGTTCACCTGCGTTGAAAGATTTTTGGATAGATCTGCGTAATCTCTGAGCAAGTATTTCGCTAGCGGCATCCCCCCTGAATTGTAGGCGCATGAACAAGGACTTTTTCTTGACCGTTTGGAATTCGCCTATTTTCACTTTAAAGATCATATATTTAATTATAAACTTTCTGGGATACCCGTTCTCCCTCAGAACATTATGCAATGTGTTTAGCTCATTGT] [+] EMBL CD200245 [TTAGCCACGCTGGGAGGTGTTCACGAGCACGAAAATGTAAATTCCTAGAACTTCGACCAATATAACTTGCTCCACAGGAGCAGTCGAACTGATAAATACAAAATGAAGTGGTCATTCTAGGAACTTCATCTTTAAGCCTCGGTGTCACCATTGGACGCGTAGAAAACACCAAACGTAGTTCACCTGCGTTGAAAGATTTTTGGATAGATCTGCGTAATCTCTGAGCAAGTATTTCGCTAGCGGCATCCCCCCTGAATTGTAGGCGCATGAACAAGGACTTTTTCTTGACCGTTTGGAATTCGCCTATTTTCACTTTAAAGATCATATATTTAATTATAAACTTTCTGGGATACCCGTTCTCCCTCAGAACATTATGCAATGTGTTTAGCTCATTGT] consensusID : consensus_525#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 247 fasta sequence [TTAGCCACCTATTTACTAGTGATTACCTAAGATTGCTTAGCCACCCACAACTTAGAAGCATTTAAATAATCAACATGACTAGGAACAGGAACAGTTCATCACTTTCGTAACACGCCCACATGGACCTCATTATCCCTATTTACACGCATTACCGACCACCCAAGGACTCCCCACAAAATAAATTATTATTACAAACCCTCTACCAACTGATAAAATCCCACCAATTTCTCCTTACTAATTTTAACCC] [+] EMBL AW146485 [TTAGCCACCTATTTACTAGTGATTACCTAAGATTGCTTAGCCACCCACAACTTAGAAGCATTTAAATAATCAACATGACTAGGAACAGGAACAGTTCATCACTTTCGTAACACGCCCACATGGACCTCATTATCCCTATTTACACGCATTACCGACCACCCAAGGACTCCCCACAAAATAAATTATTATTACAAACCCTCTACCAACTGATAAAATCCCACCAATTTCTCCTTACTAATTTTAACCC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_525#0 TTAGCCACGCTGGGAGGTGTTCACGAGCACGAAAATGTAAATTCCTAGAACTTCGACCAA 60 consensus_525#1 TTAGCCACC--------TATTTACTAGTGATTACCTAAGATTGCTTAG-----CCACCCA 47 ******** * ** ** ** * * * * * *** * *** * consensus_525#0 TATAACTTGCTCCACAGGAGCAGTCGAACTGA-TAAATACAAAATGAAGTGGTCATTCTA 119 consensus_525#1 CA-ACTTAGAAGCATTTAAATAATCAACATGACTAGGAACAGGAACAGTTCATCACTTTC 106 * * * * ** * * ** * *** ** *** * * * *** * * consensus_525#0 GGAACTTCATCTT-TAAGCCTCGGTGTCACCATTGGACGCGTAGAAAACACCAAACGTAG 178 consensus_525#1 GTAACACGCCCACATGGACCTCATTATCCCTATTT-ACACGCATTACCGACCACCCAAGG 165 * *** * * **** * ** * *** ** ** * * **** * * consensus_525#0 TTCACCTGCGTTGAAAGATTTTTGGATAGATCTGCGTAATCTCTGAGCAAGTATTTCGCT 238 consensus_525#1 ACTCCCCACAAAATAAATTATTATTACAAACCCTC-TACCAACTGATAAA--ATCCCACC 222 ** * ** * ** * * * * * ** **** ** ** * * consensus_525#0 AGCGGCATCCCCCCTGAATTGTAGGCGCATGAACAAGGACTTTTTCTTGACCGTTTGGAA 298 consensus_525#1 AATTTC-TCCTTACT-AATTTTAACCC--------------------------------- 247 * * *** ** **** ** * consensus_525#0 TTCGCCTATTTTCACTTTAAAGATCATATATTTAATTATAAACTTTCTGGGATACCCGTT 358 consensus_525#1 ------------------------------------------------------------ consensus_525#0 CTCCCTCAGAACATTATGCAATGTGTTTAGCTCATTGT 396 consensus_525#1 -------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||