cluster # 5250

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Schistosoma mansoni
cluster # 5250 cluster # 5250 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5250#0 length = 454 sequences # 2

consensus_5250#1 length = 173 sequences # 1

consensusID : consensus_5250#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 454
fasta sequence

                              [TCGCTACATAATTATGGCAACCTTTAAATCATATTTATTGTTACGATGAAGAAGTAAAGGGGAGGGGAAATATGGTATTACATTCGTTTTTAATAATCATCTGGAGCACGTGTTTCAAAAAAATGAGGTCCGTGATTATCTACTGTAACTAAATTGTTAGGAGTATTAATAGCAGTAGAAGAATGATGTACATCAACAGGGTTGTTATTATTGGTCATACTATTATCCGATTTGACAAGATGTAATTGTTGATATGTATCTGCGTATGAAATATTCTGATTATCAGGTAGACGTTTTACTACATAAATGGTATCACCAACACATGTCATAATATATATTGAATGCTCGAAGTGTACAGTTAATCTTTTGAATTGTTGGATTTTTCTTTCACCTTCCATATTTAATAAACGACCAACTCTATTGGCGATCGCAGCAAAATGTTGGGCTAATTCTT]

[+] EMBL CD140570             [TCGCTACATAATTATGGCAACCTTTAAATCATATTTATTGTTACGATGAAGAAGTAAAGGGGAGGGGAAATATGGTATTACATTCGTTTTTAATAATCATCTGGAGCACGTGTTTCAAAAAAATGAGGTCCGTGATTATCTACTGTAACTAAATTGTTAGGAGTATTAATAGCAGTAGAAGAATGATGTACATCAACAGGGTTGTTATTATTGGTCATACTATTATCCGATTTGACAAGATGTAATTGTTGATATGTATCTGCGTATGAAATATTCTGATTATCAGGTAGACGTTTTACTACATAAATGGTATCACCAACACATGTCATAATATATATTGAATGCTCGAAG                                                                                                       ]
[-] EMBL CD085481             [                                                                                                                                                                                            TACATCAACAGGGTTGTTATTATTGGTCATACTATTATCCGATTTGACAAGATGTAATTGTTGATATGTATCTGCGTATGAAATATTCTGATTATCAGGTAGACGTTTTACTACATAAATGGTATCACCAACACATGTCATAATATATATTGAATGCTCGAAGTGTACAGTTAATCTTTTGAATTGTTGGATTTTTCTTTCACCTTCCATATTTAATAAACGACCAACTCTATTGGCGATCGCAGCAAAATGTTGGGCTAATTCTT]




>consensus_5250#0
TCGCTACATAATTATGGCAACCTTTAAATCATATTTATTGTTACGATGAAGAAGTAAAGG
GGAGGGGAAATATGGTATTACATTCGTTTTTAATAATCATCTGGAGCACGTGTTTCAAAA
AAATGAGGTCCGTGATTATCTACTGTAACTAAATTGTTAGGAGTATTAATAGCAGTAGAA
GAATGATGTACATCAACAGGGTTGTTATTATTGGTCATACTATTATCCGATTTGACAAGA
TGTAATTGTTGATATGTATCTGCGTATGAAATATTCTGATTATCAGGTAGACGTTTTACT
ACATAAATGGTATCACCAACACATGTCATAATATATATTGAATGCTCGAAGTGTACAGTT
AATCTTTTGAATTGTTGGATTTTTCTTTCACCTTCCATATTTAATAAACGACCAACTCTA
TTGGCGATCGCAGCAAAATGTTGGGCTAATTCTT

consensusID : consensus_5250#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 173
fasta sequence

                              [CATNCTATTATCCGACTTGACGAGATGTAATTGTTGATATGTATCTGCGTATGAAATANTCTGATTATCAGGTAGACGTTTTACTANCATAAATGGTATNCACCCACACATNTNCATAATATATAATGNATGNCTCCGNAGTGTATCAGTTAATCTTNTGAATTTTTGGAGGN]

[-] EMBL SM6992               [CATNCTATTATCCGACTTGACGAGATGTAATTGTTGATATGTATCTGCGTATGAAATANTCTGATTATCAGGTAGACGTTTTACTANCATAAATGGTATNCACCCACACATNTNCATAATATATAATGNATGNCTCCGNAGTGTATCAGTTAATCTTNTGAATTTTTGGAGGN]




>consensus_5250#1
CATNCTATTATCCGACTTGACGAGATGTAATTGTTGATATGTATCTGCGTATGAAATANT
CTGATTATCAGGTAGACGTTTTACTANCATAAATGGTATNCACCCACACATNTNCATAAT
ATATAATGNATGNCTCCGNAGTGTATCAGTTAATCTTNTGAATTTTTGGAGGN

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5250#0      TCGCTACATAATTATGGCAACCTTTAAATCATATTTATTGTTACGATGAAGAAGTAAAGG 60
consensus_5250#1      ------------------------------------------------------------
                                                                                  

consensus_5250#0      GGAGGGGAAATATGGTATTACATTCGTTTTTAATAATCATCTGGAGCACGTGTTTCAAAA 120
consensus_5250#1      ------------------------------------------------------------
                                                                                  

consensus_5250#0      AAATGAGGTCCGTGATTATCTACTGTAACTAAATTGTTAGGAGTATTAATAGCAGTAGAA 180
consensus_5250#1      ------------------------------------------------------------
                                                                                  

consensus_5250#0      GAATGATGTACATCAACAGGGTTGTTATTATTGGTCATACTATTATCCGATTTGACAAGA 240
consensus_5250#1      -----------------------------------CATNCTATTATCCGACTTGACGAGA 25
                                                         *** *********** ***** ***

consensus_5250#0      TGTAATTGTTGATATGTATCTGCGTATGAAATATTCTGATTATCAGGTAGACGTTTTACT 300
consensus_5250#1      TGTAATTGTTGATATGTATCTGCGTATGAAATANTCTGATTATCAGGTAGACGTTTTACT 85
                      ********************************* **************************

consensus_5250#0      AC-ATAAATGGTATC-ACCAACACATGTC-ATAATATATATTGAATGCT--CGAAGTGTA 355
consensus_5250#1      ANCATAAATGGTATNCACCCACACATNTNCATAATATATAATGNATGNCTCCGNAGTGTA 145
                      *  ***********  *** ****** *  ********** ** ***    ** ******

consensus_5250#0      -CAGTTAATCTTTTGAATTGTTGGATTTTTCTTTCACCTTCCATATTTAATAAACGACCA 414
consensus_5250#1      TCAGTTAATCTTNTGAATTTTTGGAGGN-------------------------------- 173
                       *********** ****** *****                                   

consensus_5250#0      ACTCTATTGGCGATCGCAGCAAAATGTTGGGCTAATTCTT 454
consensus_5250#1      ----------------------------------------