cluster # 5255

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Schistosoma mansoni
cluster # 5255 cluster # 5255 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5255#0 length = 380 sequences # 2

consensus_5255#1 length = 362 sequences # 1

consensusID : consensus_5255#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 380
fasta sequence

                              [ATTCCGCATGTTGCAAAAGATCAAGCAAGTGAAGACAGTACGGATAAATAAGATACCTTGAATATGCAGGGTCCTTCCAATACAGTAAATACTTCAAGTACTTTATGAAATTCGGCTTTTCAAACCAACCTTGCTGTGCAAGAAAATTTAGATAGCTAGGATTGGCAAGACATTGGACAAATTCCAGTTCTATTTGAAACCTATTTCGCGATTCATCTAGACCAAAGTTTTTGAGGTTGTTTTGAGGACGACTTCGAGATTGCATTTTACTCAGGAGAGTTAAGCAACGAAGCTATAGTTTTCCCGAATTTTGATAAGCTCAGATTTTCATGATGGAGTTATCTACCGGAATCTCAGGAAGGTAGTTGATGGAATAGATG]

[+] EMBL CD139126             [ATTCCGCATGTTGCAAAAGATCAAGCAAGTGAAGACAGTACGGATAAATAAGATACCTTGAATATGCAGGGTCCTTCCAATACAGTAAATACTTCAAGTACTTTATGAAATTCGGCTTTTCAAACCAACCTTGCTGTGCAAGAAAATTTAGATAGCTAGGATTGGCAAGACATTGGACAAATTCCAGTTCTATTTGAAACCTATTTCGCGATTCATCTAGACCAAAGTTTTTGAGGTTGTTTTGAGGACGACTTCGAGATTGCATTTTACTCAGGAGAGTTAAGCAACGAAGCTATAGTTTTCCCGAATTTTGATAAGCTCAGATTTTCATGATGGAGTTATCTACCGGAATCTCAGGAAGGTAGTTGATGGAATAGATG]
[+] EMBL CD194322             [ATTCCGCATGTTGCAAAAGATCAAGCAAGTGAAGACAGTACGGATAAATAAGATACCTTGAATATGCAGGGTCCTTCCAATACAGTAAATACTTCAAGTACTTTATGAAATTCGGCTTTTCAAACCAACCTTGCTGTGCAAGAAAATTTAGATAGCTAGGATTGGCAAGACATTGGACAAATTCCAGTTCTATTTGAAACCCATTTCGCGATTCATCTAGACCAAAGTTTTTGAGGTTGTTTTGAGGACGACTTCGAGATTGCATTTTACTCAGGAGAGTTAAGCAACGAAGCTATTATTTTCCCGAATTTTGATAAGCTCAGATTTTCATGATGGAGTTATCTACCGGAATCTCAGGAAGGTAGTTGATGGAA      ]




>consensus_5255#0
ATTCCGCATGTTGCAAAAGATCAAGCAAGTGAAGACAGTACGGATAAATAAGATACCTTG
AATATGCAGGGTCCTTCCAATACAGTAAATACTTCAAGTACTTTATGAAATTCGGCTTTT
CAAACCAACCTTGCTGTGCAAGAAAATTTAGATAGCTAGGATTGGCAAGACATTGGACAA
ATTCCAGTTCTATTTGAAACCTATTTCGCGATTCATCTAGACCAAAGTTTTTGAGGTTGT
TTTGAGGACGACTTCGAGATTGCATTTTACTCAGGAGAGTTAAGCAACGAAGCTATAGTT
TTCCCGAATTTTGATAAGCTCAGATTTTCATGATGGAGTTATCTACCGGAATCTCAGGAA
GGTAGTTGATGGAATAGATG

consensusID : consensus_5255#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 362
fasta sequence

                              [TTCCGCATGTTGCAAAAGATCAAGCAAGTGAAGACAGTACGGATAAATAAGATACCTTGAATATGCAGGGTCCTTCCAATACAGTAAATACTTCAAGTACTTTATGAAATTCGGCTTTTCAAACCAACCTTGCTGTGCAAGAAAATTTAGATAGCTAGGATTGGCAAGACATTGGACAAATTCCAGTTCTATTTGAAACCTATTTCGCGATTCATTTTTGAGGTTGTTTTGAGGACGACTTCGAGATTGCATTTTACTCAGGAGAGTTAAGCAACGAAGCTATAATTTTCCCGAATTTTGATAAGCTCAGATTTTCATGATGGAGTTATCTACCGGAATCTCAGGAAGGTAGTTGATGGAAT]

[-] EMBL CD139204             [TTCCGCATGTTGCAAAAGATCAAGCAAGTGAAGACAGTACGGATAAATAAGATACCTTGAATATGCAGGGTCCTTCCAATACAGTAAATACTTCAAGTACTTTATGAAATTCGGCTTTTCAAACCAACCTTGCTGTGCAAGAAAATTTAGATAGCTAGGATTGGCAAGACATTGGACAAATTCCAGTTCTATTTGAAACCTATTTCGCGATTCATTTTTGAGGTTGTTTTGAGGACGACTTCGAGATTGCATTTTACTCAGGAGAGTTAAGCAACGAAGCTATAATTTTCCCGAATTTTGATAAGCTCAGATTTTCATGATGGAGTTATCTACCGGAATCTCAGGAAGGTAGTTGATGGAAT]




>consensus_5255#1
TTCCGCATGTTGCAAAAGATCAAGCAAGTGAAGACAGTACGGATAAATAAGATACCTTGA
ATATGCAGGGTCCTTCCAATACAGTAAATACTTCAAGTACTTTATGAAATTCGGCTTTTC
AAACCAACCTTGCTGTGCAAGAAAATTTAGATAGCTAGGATTGGCAAGACATTGGACAAA
TTCCAGTTCTATTTGAAACCTATTTCGCGATTCATTTTTGAGGTTGTTTTGAGGACGACT
TCGAGATTGCATTTTACTCAGGAGAGTTAAGCAACGAAGCTATAATTTTCCCGAATTTTG
ATAAGCTCAGATTTTCATGATGGAGTTATCTACCGGAATCTCAGGAAGGTAGTTGATGGA
AT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5255#0      ATTCCGCATGTTGCAAAAGATCAAGCAAGTGAAGACAGTACGGATAAATAAGATACCTTG 60
consensus_5255#1      -TTCCGCATGTTGCAAAAGATCAAGCAAGTGAAGACAGTACGGATAAATAAGATACCTTG 59
                       ***********************************************************

consensus_5255#0      AATATGCAGGGTCCTTCCAATACAGTAAATACTTCAAGTACTTTATGAAATTCGGCTTTT 120
consensus_5255#1      AATATGCAGGGTCCTTCCAATACAGTAAATACTTCAAGTACTTTATGAAATTCGGCTTTT 119
                      ************************************************************

consensus_5255#0      CAAACCAACCTTGCTGTGCAAGAAAATTTAGATAGCTAGGATTGGCAAGACATTGGACAA 180
consensus_5255#1      CAAACCAACCTTGCTGTGCAAGAAAATTTAGATAGCTAGGATTGGCAAGACATTGGACAA 179
                      ************************************************************

consensus_5255#0      ATTCCAGTTCTATTTGAAACCTATTTCGCGATTCATCTAGACCAAAGTTTTTGAGGTTGT 240
consensus_5255#1      ATTCCAGTTCTATTTGAAACCTATTTCGCGATTCAT------------TTTTGAGGTTGT 227
                      ************************************            ************

consensus_5255#0      TTTGAGGACGACTTCGAGATTGCATTTTACTCAGGAGAGTTAAGCAACGAAGCTATAGTT 300
consensus_5255#1      TTTGAGGACGACTTCGAGATTGCATTTTACTCAGGAGAGTTAAGCAACGAAGCTATAATT 287
                      ********************************************************* **

consensus_5255#0      TTCCCGAATTTTGATAAGCTCAGATTTTCATGATGGAGTTATCTACCGGAATCTCAGGAA 360
consensus_5255#1      TTCCCGAATTTTGATAAGCTCAGATTTTCATGATGGAGTTATCTACCGGAATCTCAGGAA 347
                      ************************************************************

consensus_5255#0      GGTAGTTGATGGAATAGATG 380
consensus_5255#1      GGTAGTTGATGGAAT----- 362
                      ***************