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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_526#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 683 fasta sequence
[GGCACGAGGTCTAAATCTTTGCGTTCCTGAATAATACTTATATCCAGTGTTTTCTGTGGTTTGCTTCCATTATGTGACTCAGATTTCCCAAAAAACCATGCATACAATTTAAGATNNNNNNNNNNNNNNNNNNNNNNNNACCGTTTACTTACTTACTTGCCTGTTACCCCTCGTGGAGAATGCTGGTGAGCGGCCTATGCTCCTCGACGAGGAGTAAAAGGCGTAAGTGAGTAAGTAAGTAAGTAAGTAAGTAAGTACATTTAGATGGTAATATTTTATTTCATCATAGTTTTCTCATTTTTTCTTCGCCTTCACTGTGTTTCTGTGTTTCTTCCTGAACTGTATTTATGTTGTTTTAGTTGTTAATTATTCTTAGCGGCAGCTATATTGNNNNNNNNNNNNNNNNNNNNNNNNCTTGAGTTGACTGGGATTGTCCATTTTGATTGTGAATTGAAGCACTTTTCCAGAATTGGAAACACTTTGTGTTATAAAGCAATAAAATATTATCCTTTGGAAGGATTTTTACGTGATCTGTTCAGAAAGGGTAGTGTATTCTACATTCATTATCAATTTGTCTATTTATTGTAATTTAGATAGATTATTGAGGGNAACAATATTGGTTGAATAGTGAGCGGTATATTTGTTTAGTAATATGTACATTTGTATTTACATGCATTTAAACC]
[+] EMBL CD081057 [GGCACGAGGTCTAAATCTTTGCGTTCCTGAATAATACTTATATCCAGTGTTTTCTGTGGTTTGCTTCCATTATGTGACTCAGATTTCCCAAAAAACCATGCATACAATTTAAGATNNNNNNNNNNNNNNNNNNNNNNNNACCGTTTACTTACTTACTTGCCTGTTACCCCTCGTGGAGAATGCTGGTGAGCGGCCTATGCTCCTCGACGAGGAGTAAAAGGCGTAAGTGAGTAAGTAAGTAAGTAAGTAAGTAAGTACATTTAGATGGTAATATTTTATTTCATCATAGTTTTCTCATTTTTTCTTCGCCTTCACTGTGTTTCTGTGTTTCTTCCTGAACTGTATTTATGTTGTTTTAGTTGTTAATTATTCTTAGCGGCAGCTATATTGNNNNNNNNNNNNNNNNNNNNNNNNCTTGAGTTGACTGGGATTGTCCATTTTGATTGTGAATTGAAGCACTTTTCCAGAATTGGAAACACTTTGTGTTATAAAGCAATAAAATATTATCCTTTGGAAGGATTTTTACGTGATCTGTTCAGAAAGGGTAGTGTATTCTACATTCATTATCAATTTGTCTATTTATTGTAATTTAGATAGATTATTGAGGGNAACAATATTGGTTGAATAGTGAGCGGTATATTTGTTTAGTAATATGTACATTTGTATTTACATGCATTTAAACC]
consensusID : consensus_526#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 541 fasta sequence
[ACGAGGAGTAAAAGGCGTAAGTGAGTAAGTAAGTAAGTAAGTAAGTAAGTCCATTTTGTTGGTCTTTTTGATGCCATTTGAGATGGTAATATTTTATTTCATCATAGTTTTCTCATTTTTTCTTCGCCTTCACTGTGTTTCTGTGTTTCTTCCTGAACGGTATTTATGTTGTTTTAGTTGTTAATTATTCTTAGCGGCAGCTATATTGATTGTTCCCCCTTTTACTGTGCTGCTTGAGTTGACTGGGATTGTCCATTTTGATTGTGAATTGAAGCACTTTTCCAGAATTGGAAACACTTTGTGTTATAAAGCAATAAAATATTATCCTTTGGAAGGATTTTTACGTGATCTGTTCAGAAAGGGTAGTGTAACACTTACTTTTTGATGCACTCGGTAATTTTCTTACATTCATTATCAATTTGTCTATTTATTGTAATTTAGATAGATTATTGAGGGAACAAATTATTGGTTGAATAAGTGAGCGGTAATATTTGTTTAGGTAATAATGTACATTTGTATTTCCAATGCAATTTAGACCCAT]
[-] EMBL CD074881 [ACGAGGAGTAAAAGGCGTAAGTGAGTAAGTAAGTAAGTAAGTAAGTAAGTCCATTTTGTTGGTCTTTTTGATGCCATTTGAGATGGTAATATTTTATTTCATCATAGTTTTCTCATTTTTTCTTCGCCTTCACTGTGTTTCTGTGTTTCTTCCTGAACGGTATTTATGTTGTTTTAGTTGTTAATTATTCTTAGCGGCAGCTATATTGATTGTTCCCCCTTTTACTGTGCTGCTTGAGTTGACTGGGATTGTCCATTTTGATTGTGAATTGAAGCACTTTTCCAGAATTGGAAACACTTTGTGTTATAAAGCAATAAAATATTATCCTTTGGAAGGATTTTTACGTGATCTGTTCAGAAAGGGTAGTGTAACACTTACTTTTTGATGCACTCGGTAATTTTCTTACATTCATTATCAATTTGTCTATTTATTGTAATTTAGATAGATTATTGAGGGAACAAATTATTGGTTGAATAAGTGAGCGGTAATATTTGTTTAGGTAATAATGTACATTTGTATTTCCAATGCAATTTAGACCCAT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_526#0 GGCACGAGGTCTAAATCTTTGCGTTCCTGAATAATACTTATATCCAGTGTTTTCTGTGGT 60
consensus_526#1 ------------------------------------------------------------
consensus_526#0 TTGCTTCCATTATGTGACTCAGATTTCCCAAAAAACCATGCATACAATTTAAGATNNNNN 120
consensus_526#1 ------------------------------------------------------------
consensus_526#0 NNNNNNNNNNNNNNNNNNNACCGTTTACTTACTTACTTGCCTGTTACCCCTCGTGGAGAA 180
consensus_526#1 ------------------------------------------------------------
consensus_526#0 TGCTGGTGAGCGGCCTATGCTCCTCGACGAGGAGTAAAAGGCGTAAGTGAGTAAGTAAGT 240
consensus_526#1 --------------------------ACGAGGAGTAAAAGGCGTAAGTGAGTAAGTAAGT 34
**********************************
consensus_526#0 AAGTAAGTAAGTAAGTACATTT------------------------AGATGGTAATATTT 276
consensus_526#1 AAGTAAGTAAGTAAGTCCATTTTGTTGGTCTTTTTGATGCCATTTGAGATGGTAATATTT 94
**************** ***** **************
consensus_526#0 TATTTCATCATAGTTTTCTCATTTTTTCTTCGCCTTCACTGTGTTTCTGTGTTTCTTCCT 336
consensus_526#1 TATTTCATCATAGTTTTCTCATTTTTTCTTCGCCTTCACTGTGTTTCTGTGTTTCTTCCT 154
************************************************************
consensus_526#0 GAACTGTATTTATGTTGTTTTAGTTGTTAATTATTCTTAGCGGCAGCTATATTGNNNNNN 396
consensus_526#1 GAACGGTATTTATGTTGTTTTAGTTGTTAATTATTCTTAGCGGCAGCTATATTGATTGTT 214
**** *************************************************
consensus_526#0 NNNNNNNNNNNNNNNNNNCTTGAGTTGACTGGGATTGTCCATTTTGATTGTGAATTGAAG 456
consensus_526#1 CCCCCTTTTACTGTGCTGCTTGAGTTGACTGGGATTGTCCATTTTGATTGTGAATTGAAG 274
******************************************
consensus_526#0 CACTTTTCCAGAATTGGAAACACTTTGTGTTATAAAGCAATAAAATATTATCCTTTGGAA 516
consensus_526#1 CACTTTTCCAGAATTGGAAACACTTTGTGTTATAAAGCAATAAAATATTATCCTTTGGAA 334
************************************************************
consensus_526#0 GGATTTTTACGTGATCTGTTCAGAAAGGGTAGTGTA------------------------ 552
consensus_526#1 GGATTTTTACGTGATCTGTTCAGAAAGGGTAGTGTAACACTTACTTTTTGATGCACTCGG 394
************************************
consensus_526#0 ------TTCTACATTCATTATCAATTTGTCTATTTATTGTAATTTAGATAGATTATTGAG 606
consensus_526#1 TAATTTTCTTACATTCATTATCAATTTGTCTATTTATTGTAATTTAGATAGATTATTGAG 454
* ***************************************************
consensus_526#0 GGNAACAAT-ATTGGTTGAATA-GTGAGCGGTA-TATTTGTTTAG-TAATA-TGTACATT 661
consensus_526#1 GGAACAAATTATTGGTTGAATAAGTGAGCGGTAATATTTGTTTAGGTAATAATGTACATT 514
** * *** ************ ********** *********** ***** ********
consensus_526#0 TGTATTTACA-TGCA-TTTAAACC--- 683
consensus_526#1 TGTATTTCCAATGCAATTTAGACCCAT 541
******* ** **** **** ***
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||