cluster # 5264

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Schistosoma mansoni
cluster # 5264 cluster # 5264 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5264#0 length = 406 sequences # 2

consensus_5264#1 length = 299 sequences # 1

consensusID : consensus_5264#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 406
fasta sequence

                              [TTTGCATCATACCGGGTAACTGATGAGCAGCTGCATATAACTGATGTAACTGCTGTTGTGCAGAAGCTAAAGCTTGTTGCTGTTGCGATCCTGGGGAATTTGATATAACCGCTGGACTAATAGGAGGGGAACCCGATGCTAGAATATAACATATGCCGATTAGGGGTAGACATTTGTTGTTGTTGCTGTTGCTGCTGGCGCTGCATTTGCTGACGTTGCAACTGTTGCATTTGGGCCAATGCAGCTGCATTTACTGCCTGATATTGAGCTTGTTGGTTTTGTAGAGCCTGGAAATGTGCAGCTTGAGAGTATTGTTNGTTGTGTTGCTGCTGCTGACGTTNGTGCGGNTGTTGTTGGTGGCTGTGNTGNTGTTGAGCCGGGTACTGACCATTGTATTGCATTAGTA]

[+] EMBL CD193877             [TTTGCATCATACCGGGTAACTGATGAGCAGCTGCATATAACTGATGTAACTGCTGTTGTGCAGAAGCTAAAGCTTGTTGCTGTTGCGATCCTGGGGAATTTGATATAACCGCTGGACTAATAGGAGGGGAACCCGATGCTAGAATATAACATATGCCGATTAGGGGTAGACATTTGTTGTTGTTGCTGTTGCTGCTGGCGCTGCATTTGCTGACG                                                                                                                                                                                               ]
[+] EMBL CD136250             [                                         TGATGTAACTGCTGTTGTGCAGAAGCTAAAGCTTGTTGCTGTTGCGATCCTGGGGAATTTGATATAACCGCTGGACTAATAGGAGGGGAACCCGATGCT GAATATAACATATGCCGATTAGGGGTAGACAT   TTGTTGTTGCTGTTGCTGCTGGCGCTGCATTTGTTGACGTTGCAACTGTTGCATTTGGGCCAATGCAGCTGCATTTACTGCCTGATATTGAGCTTGTTGGTTTTGTAGAGCCTGGAAATGTGCAGCTTGAGAGTATTGTTNGTTGTGTTGCTGCTGCTGACGTTNGTGCGGNTGTTGTTGGTGGCTGTGNTGNTGTTGAGCCGGGTACTGACCATTGTATTGCATTAGTA]




>consensus_5264#0
TTTGCATCATACCGGGTAACTGATGAGCAGCTGCATATAACTGATGTAACTGCTGTTGTG
CAGAAGCTAAAGCTTGTTGCTGTTGCGATCCTGGGGAATTTGATATAACCGCTGGACTAA
TAGGAGGGGAACCCGATGCTAGAATATAACATATGCCGATTAGGGGTAGACATTTGTTGT
TGTTGCTGTTGCTGCTGGCGCTGCATTTGCTGACGTTGCAACTGTTGCATTTGGGCCAAT
GCAGCTGCATTTACTGCCTGATATTGAGCTTGTTGGTTTTGTAGAGCCTGGAAATGTGCA
GCTTGAGAGTATTGTTNGTTGTGTTGCTGCTGCTGACGTTNGTGCGGNTGTTGTTGGTGG
CTGTGNTGNTGTTGAGCCGGGTACTGACCATTGTATTGCATTAGTA

consensusID : consensus_5264#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 299
fasta sequence

                              [CTTGTTGCTGTTGCGATCCTGGGGAATTTGATATAACCGCTGGACTAATAGGAGGGGAACCCGATGCTGAATATAACATATGCCGATTAGGGGTAGACATTTGTTGTTGTTGCTGTTGCTGCTGGCGCTGCATTTGTTGACGTTGCAACTGTTGCATTTGGGCCAATGCAGCTGCATTTACTGCCTGATATTGAGCTTGTTGGTTTTGTAGAGCCTGGAAATGTGCAGCTTGAGAGTATTGTTGTTGTTGCTGCTGCTGACGTTGTTGCGGTTGTTGTGACAACTTGTGCGAGATTCGG]

[-] EMBL CD061353             [CTTGTTGCTGTTGCGATCCTGGGGAATTTGATATAACCGCTGGACTAATAGGAGGGGAACCCGATGCTGAATATAACATATGCCGATTAGGGGTAGACATTTGTTGTTGTTGCTGTTGCTGCTGGCGCTGCATTTGTTGACGTTGCAACTGTTGCATTTGGGCCAATGCAGCTGCATTTACTGCCTGATATTGAGCTTGTTGGTTTTGTAGAGCCTGGAAATGTGCAGCTTGAGAGTATTGTTGTTGTTGCTGCTGCTGACGTTGTTGCGGTTGTTGTGACAACTTGTGCGAGATTCGG]




>consensus_5264#1
CTTGTTGCTGTTGCGATCCTGGGGAATTTGATATAACCGCTGGACTAATAGGAGGGGAAC
CCGATGCTGAATATAACATATGCCGATTAGGGGTAGACATTTGTTGTTGTTGCTGTTGCT
GCTGGCGCTGCATTTGTTGACGTTGCAACTGTTGCATTTGGGCCAATGCAGCTGCATTTA
CTGCCTGATATTGAGCTTGTTGGTTTTGTAGAGCCTGGAAATGTGCAGCTTGAGAGTATT
GTTGTTGTTGCTGCTGCTGACGTTGTTGCGGTTGTTGTGACAACTTGTGCGAGATTCGG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5264#0      TTTGCATCATACCGGGTAACTGATGAGCAGCTGCATATAACTGATGTAACTGCTGTTGTG 60
consensus_5264#1      ------------------------------------------------------------
                                                                                  

consensus_5264#0      CAGAAGCTAAAGCTTGTTGCTGTTGCGATCCTGGGGAATTTGATATAACCGCTGGACTAA 120
consensus_5264#1      ------------CTTGTTGCTGTTGCGATCCTGGGGAATTTGATATAACCGCTGGACTAA 48
                                  ************************************************

consensus_5264#0      TAGGAGGGGAACCCGATGCTAGAATATAACATATGCCGATTAGGGGTAGACATTTGTTGT 180
consensus_5264#1      TAGGAGGGGAACCCGATGCT-GAATATAACATATGCCGATTAGGGGTAGACATTTGTTGT 107
                      ******************** ***************************************

consensus_5264#0      TGTTGCTGTTGCTGCTGGCGCTGCATTTGCTGACGTTGCAACTGTTGCATTTGGGCCAAT 240
consensus_5264#1      TGTTGCTGTTGCTGCTGGCGCTGCATTTGTTGACGTTGCAACTGTTGCATTTGGGCCAAT 167
                      ***************************** ******************************

consensus_5264#0      GCAGCTGCATTTACTGCCTGATATTGAGCTTGTTGGTTTTGTAGAGCCTGGAAATGTGCA 300
consensus_5264#1      GCAGCTGCATTTACTGCCTGATATTGAGCTTGTTGGTTTTGTAGAGCCTGGAAATGTGCA 227
                      ************************************************************

consensus_5264#0      GCTTGAGAGTATTGTTNGTTGTGTTGCTGCTGCTGACGTTNGTGCGGNTGTTGTTGGTGG 360
consensus_5264#1      GCTTGAGAGTATTGTTGTT---GTTGCTGCTGCTGACGTTGTTGCGGTTGTTGTGACAAC 284
                      ****************  *   ******************  ***** ******      

consensus_5264#0      CTGTGNTGNTGTTGAGCCGGGTACTGACCATTGTATTGCATTAGTA 406
consensus_5264#1      TTGTGCGAGATTCGG------------------------------- 299
                       ****      * *