cluster # 528

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Schistosoma mansoni
cluster # 528 cluster # 528 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_528#0 length = 932 sequences # 1

consensus_528#1 length = 397 sequences # 1

consensusID : consensus_528#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 932
fasta sequence

                              [AGNAATTCGGCACGAGGGAACACCAACAANTTTGAAAAATGAAACAGTCACTCACACTCGTCTTCTTAGTAGCCATTGGTTACGCCACCGCCCACACCACATCACATGACTATTCGGGTGGGTACGGTGGCGGTTGCTATGGTAGCGATTGTGATAGCGGTTATGGCCACACTATAACCATAGTCGTTATCACGGATATTATGATGATTTAGATAAATATGATAGTGAATTGAGAGAGTTAGTTCTCAGTGGACATCGGTATAAACCAAGATATTATGAAGGAGAAGGTTATGGATTAGTAGGTGAAGAAACGTATGTTAAAAAACCAAAAGATCCTAGTAAATATGATCAATATGGAAATTATATACCTGATTATCAGACACCACAACCTTCTCCTCCTCCTCCTCATCCTACTCCTATACCTTCTAATTCAAACGAACAACCTAGTGGTAACGTAGGAGAAAACGTTAATAATGAGGAAGGCGAAGATAATAAACCCGATGAAACAGAAGAGAACGAATATAAGCCTACTAGATATGTTAAATATAAGAAATACAAACCGTCAAACAAACGCGTATCAAGCAAAACAAAATCATCCAAGAAAGGAACGAAAGGAACCAAAGGAACGAAAGGAACGAAAGGAAAGAGGGGAAAAGGAAAGTATAAAAAATATGGAAATAGGTACAAACCACAACCAACACCACATCCAGAAGAACCACANACTATACCACAACATGGCGAAGACGACGGAGAAGATGAAGAAAACGAACAGTGATATTGGTAAACATAGGTGAATAAATACANATGCNAACCACATGAAAAATGATCTTTATATTAAACTAATATGAACTGTTTATANCAGTGAAACTGTATANNTATATANNTATATATGGGTATACATAACCTATTATACATTACATTATAAATACAAT]

[+] EMBL CD081535             [AGNAATTCGGCACGAGGGAACACCAACAANTTTGAAAAATGAAACAGTCACTCACACTCGTCTTCTTAGTAGCCATTGGTTACGCCACCGCCCACACCACATCACATGACTATTCGGGTGGGTACGGTGGCGGTTGCTATGGTAGCGATTGTGATAGCGGTTATGGCCACACTATAACCATAGTCGTTATCACGGATATTATGATGATTTAGATAAATATGATAGTGAATTGAGAGAGTTAGTTCTCAGTGGACATCGGTATAAACCAAGATATTATGAAGGAGAAGGTTATGGATTAGTAGGTGAAGAAACGTATGTTAAAAAACCAAAAGATCCTAGTAAATATGATCAATATGGAAATTATATACCTGATTATCAGACACCACAACCTTCTCCTCCTCCTCCTCATCCTACTCCTATACCTTCTAATTCAAACGAACAACCTAGTGGTAACGTAGGAGAAAACGTTAATAATGAGGAAGGCGAAGATAATAAACCCGATGAAACAGAAGAGAACGAATATAAGCCTACTAGATATGTTAAATATAAGAAATACAAACCGTCAAACAAACGCGTATCAAGCAAAACAAAATCATCCAAGAAAGGAACGAAAGGAACCAAAGGAACGAAAGGAACGAAAGGAAAGAGGGGAAAAGGAAAGTATAAAAAATATGGAAATAGGTACAAACCACAACCAACACCACATCCAGAAGAACCACANACTATACCACAACATGGCGAAGACGACGGAGAAGATGAAGAAAACGAACAGTGATATTGGTAAACATAGGTGAATAAATACANATGCNAACCACATGAAAAATGATCTTTATATTAAACTAATATGAACTGTTTATANCAGTGAAACTGTATANNTATATANNTATATATGGGTATACATAACCTATTATACATTACATTATAAATACAAT]




>consensus_528#0
AGNAATTCGGCACGAGGGAACACCAACAANTTTGAAAAATGAAACAGTCACTCACACTCG
TCTTCTTAGTAGCCATTGGTTACGCCACCGCCCACACCACATCACATGACTATTCGGGTG
GGTACGGTGGCGGTTGCTATGGTAGCGATTGTGATAGCGGTTATGGCCACACTATAACCA
TAGTCGTTATCACGGATATTATGATGATTTAGATAAATATGATAGTGAATTGAGAGAGTT
AGTTCTCAGTGGACATCGGTATAAACCAAGATATTATGAAGGAGAAGGTTATGGATTAGT
AGGTGAAGAAACGTATGTTAAAAAACCAAAAGATCCTAGTAAATATGATCAATATGGAAA
TTATATACCTGATTATCAGACACCACAACCTTCTCCTCCTCCTCCTCATCCTACTCCTAT
ACCTTCTAATTCAAACGAACAACCTAGTGGTAACGTAGGAGAAAACGTTAATAATGAGGA
AGGCGAAGATAATAAACCCGATGAAACAGAAGAGAACGAATATAAGCCTACTAGATATGT
TAAATATAAGAAATACAAACCGTCAAACAAACGCGTATCAAGCAAAACAAAATCATCCAA
GAAAGGAACGAAAGGAACCAAAGGAACGAAAGGAACGAAAGGAAAGAGGGGAAAAGGAAA
GTATAAAAAATATGGAAATAGGTACAAACCACAACCAACACCACATCCAGAAGAACCACA
NACTATACCACAACATGGCGAAGACGACGGAGAAGATGAAGAAAACGAACAGTGATATTG
GTAAACATAGGTGAATAAATACANATGCNAACCACATGAAAAATGATCTTTATATTAAAC
TAATATGAACTGTTTATANCAGTGAAACTGTATANNTATATANNTATATATGGGTATACA
TAACCTATTATACATTACATTATAAATACAAT

consensusID : consensus_528#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 397
fasta sequence

                              [ACAAACGCGTATCAAGCAAAACAAAATCATCCCAGGAAAGGAACGAAAGGACCCAAAGGAACGAAAGGAACGAAAGGAAAGAGGGGAAAAGGAAAGTATAAAAAATATGGAAATAGGTACAAACCACAACCAACACCACATCCAGAAGAACCACAAACTATACCACAACATGGCGAAGACGACGGAGAAGATGAAGAAAACGAACAGTGATATTGGTAAACATAGGTGAATAAAATACAAATGCAAACAACATGAAAAATGATCTTTATATTAAACTAATATGAACTGTTTATACAAGTGAACTGTTATAATAATAATAATAATAATAATAATGGTAATAACATAACCCTATTTATACATTACATTTAATAAATACAAATTATTTAAAAAAAAAAAA]

[-] EMBL AI395476             [ACAAACGCGTATCAAGCAAAACAAAATCATCCCAGGAAAGGAACGAAAGGACCCAAAGGAACGAAAGGAACGAAAGGAAAGAGGGGAAAAGGAAAGTATAAAAAATATGGAAATAGGTACAAACCACAACCAACACCACATCCAGAAGAACCACAAACTATACCACAACATGGCGAAGACGACGGAGAAGATGAAGAAAACGAACAGTGATATTGGTAAACATAGGTGAATAAAATACAAATGCAAACAACATGAAAAATGATCTTTATATTAAACTAATATGAACTGTTTATACAAGTGAACTGTTATAATAATAATAATAATAATAATAATGGTAATAACATAACCCTATTTATACATTACATTTAATAAATACAAATTATTTAAAAAAAAAAAA]




>consensus_528#1
ACAAACGCGTATCAAGCAAAACAAAATCATCCCAGGAAAGGAACGAAAGGACCCAAAGGA
ACGAAAGGAACGAAAGGAAAGAGGGGAAAAGGAAAGTATAAAAAATATGGAAATAGGTAC
AAACCACAACCAACACCACATCCAGAAGAACCACAAACTATACCACAACATGGCGAAGAC
GACGGAGAAGATGAAGAAAACGAACAGTGATATTGGTAAACATAGGTGAATAAAATACAA
ATGCAAACAACATGAAAAATGATCTTTATATTAAACTAATATGAACTGTTTATACAAGTG
AACTGTTATAATAATAATAATAATAATAATAATGGTAATAACATAACCCTATTTATACAT
TACATTTAATAAATACAAATTATTTAAAAAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_528#0      AGNAATTCGGCACGAGGGAACACCAACAANTTTGAAAAATGAAACAGTCACTCACACTCG 60
consensus_528#1      ------------------------------------------------------------
                                                                                 

consensus_528#0      TCTTCTTAGTAGCCATTGGTTACGCCACCGCCCACACCACATCACATGACTATTCGGGTG 120
consensus_528#1      ------------------------------------------------------------
                                                                                 

consensus_528#0      GGTACGGTGGCGGTTGCTATGGTAGCGATTGTGATAGCGGTTATGGCCACACTATAACCA 180
consensus_528#1      ------------------------------------------------------------
                                                                                 

consensus_528#0      TAGTCGTTATCACGGATATTATGATGATTTAGATAAATATGATAGTGAATTGAGAGAGTT 240
consensus_528#1      ------------------------------------------------------------
                                                                                 

consensus_528#0      AGTTCTCAGTGGACATCGGTATAAACCAAGATATTATGAAGGAGAAGGTTATGGATTAGT 300
consensus_528#1      ------------------------------------------------------------
                                                                                 

consensus_528#0      AGGTGAAGAAACGTATGTTAAAAAACCAAAAGATCCTAGTAAATATGATCAATATGGAAA 360
consensus_528#1      ------------------------------------------------------------
                                                                                 

consensus_528#0      TTATATACCTGATTATCAGACACCACAACCTTCTCCTCCTCCTCCTCATCCTACTCCTAT 420
consensus_528#1      ------------------------------------------------------------
                                                                                 

consensus_528#0      ACCTTCTAATTCAAACGAACAACCTAGTGGTAACGTAGGAGAAAACGTTAATAATGAGGA 480
consensus_528#1      ------------------------------------------------------------
                                                                                 

consensus_528#0      AGGCGAAGATAATAAACCCGATGAAACAGAAGAGAACGAATATAAGCCTACTAGATATGT 540
consensus_528#1      ------------------------------------------------------------
                                                                                 

consensus_528#0      TAAATATAAGAAATACAAACCGTCAAACAAACGCGTATCAAGCAAAACAAAATCATCC-A 599
consensus_528#1      --------------------------ACAAACGCGTATCAAGCAAAACAAAATCATCCCA 34
                                               ******************************** *

consensus_528#0      AGAAAGGAACGAAAGGAACCAAAGGAACGAAAGGAACGAAAGGAAAGAGGGGAAAAGGAA 659
consensus_528#1      GGAAAGGAACGAAAGGACCCAAAGGAACGAAAGGAACGAAAGGAAAGAGGGGAAAAGGAA 94
                      **************** ******************************************

consensus_528#0      AGTATAAAAAATATGGAAATAGGTACAAACCACAACCAACACCACATCCAGAAGAACCAC 719
consensus_528#1      AGTATAAAAAATATGGAAATAGGTACAAACCACAACCAACACCACATCCAGAAGAACCAC 154
                     ************************************************************

consensus_528#0      ANACTATACCACAACATGGCGAAGACGACGGAGAAGATGAAGAAAACGAACAGTGATATT 779
consensus_528#1      AAACTATACCACAACATGGCGAAGACGACGGAGAAGATGAAGAAAACGAACAGTGATATT 214
                     * **********************************************************

consensus_528#0      GGTAAACATAGGTGAATAAA-TACANATGCNAACCACATGAAAAATGATCTTTATATTAA 838
consensus_528#1      GGTAAACATAGGTGAATAAAATACAAATGCAAACAACATGAAAAATGATCTTTATATTAA 274
                     ******************** **** **** *** *************************

consensus_528#0      ACTAATATGAACTGTTTATANCAGTGAAACTGTATANNTATA-TANNTATA----TATGG 893
consensus_528#1      ACTAATATGAACTGTTTATACAAGTGAACTGTTATAATAATAATAATAATAATAATAATG 334
                     ********************  ******    ****   *** **   ***    **  *

consensus_528#0      GTAT--ACATAACCTA--TTATACATTACATT--ATAAATACAAT--------------- 932
consensus_528#1      GTAATAACATAACCCTATTTATACATTACATTTAATAAATACAAATTATTTAAAAAAAAA 394
                     ***   ********    **************  **********                

consensus_528#0      ---
consensus_528#1      AAA 397