cluster # 5280

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Schistosoma mansoni
cluster # 5280 cluster # 5280 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5280#0 length = 551 sequences # 2

consensus_5280#1 length = 458 sequences # 1

consensusID : consensus_5280#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 551
fasta sequence

                              [ATTCATATACAACTTTATTAGATTACATATTATACTGTCCAGAAAAGAACATTGATTTCAGTAATTTCCAAATGGCAAATGGAACAAAGCAAATGACTTTTGTTTTCTACGTAGTTGACATCATTTTTATGAGATCTACATGTTATGTCGATCTACCTTTTTATGAACGATCCCAATGGTTAGAACATTATCTCAAGCAACAAATAGAAGAGTATAATGAAGGTGATCCTGTTGCTTTCCATATTCTGCCGTCATATCAATGTGATGTAGGATCAATGCAAGATGCATTCTCGTCAATCCCACCATACAAGATTGATGGTGTTCTATTTTACCACAAAGATGTTAATTACGAGCCTGGAGCAACTCCTCTTGTTAGCTGGTTGAAACCATACATGTTACCGGAGTGGTTCCCCAATATCAATTATCATTCGGATTTCATGAAAGATATTCCTGACGATTATACTGATTATATTAATGAAATACAACAATATGAAGCTAAAATGTCTCCGAAACCATTACCTTCCGTCATCTAACAAACATAGTAACTATAA]

[+] EMBL CD114137             [ATTCATATACAACTTTATTAGATTACATATTATACTGTCCAGAAAAGAACATTGATTTCAGTAATTTCCAAATGGCAAATGGAACAAAGCAAATGACTTTTGTTTTCTACGTAGTTGACATCATTTTTATGAGATCTACATGTTATGTCGATCTACCTTTTTATGAACGATCCCAATGGTTAGAACATTATCTCAAGCAACAAATAGAAGAGTATAATGAAGGTGATCCTGTTGCTTTCCATATTCTGCCGTCATATCAATGTGATGTAGGATCAATGCAAGATGCATTCTCGTCAATCCCACCATACAAGATTGATGGTGTTCTATTTTACCACAAAGATGTTAATTACGAGCCTGGAGCAACTCCTCTTGTTAGCTGGTTGAAACCATACATGTTACCGGAGTGGTTCCCCAATATCAATTATCATTCGGATTTCATGAAAGATATTCCTGACGATTATACTGATTATATTAATGAAATACAACAATATGAAGCTAAAATGTCTCCGAAACCATTACCTTCCGTCATCTAACAAACATAGTAACTATAA]
[-] EMBL CD178193             [                                                                                                                                                                                                                                                            CACATCAATGTGATGTAGGATCAANGCAAGAGGCATTCTCGTCAATCCCACCATACAAGATTGATGGCGTTCTATTTTACCACAAAGATGTTAATTACGAGCCTGGAGCAACTCCTCTTGTTAGCTGGTTGAAACCATACATGTTACCGGAGTGGTTCCCCAATATCAATTATCATTCGGATTTCATGAAAGATATTCCTGACGATTAGACTGATTATATTAATGAAAGACAACAATATGAAGCTAAAATGTCTCCG                                          ]




>consensus_5280#0
ATTCATATACAACTTTATTAGATTACATATTATACTGTCCAGAAAAGAACATTGATTTCA
GTAATTTCCAAATGGCAAATGGAACAAAGCAAATGACTTTTGTTTTCTACGTAGTTGACA
TCATTTTTATGAGATCTACATGTTATGTCGATCTACCTTTTTATGAACGATCCCAATGGT
TAGAACATTATCTCAAGCAACAAATAGAAGAGTATAATGAAGGTGATCCTGTTGCTTTCC
ATATTCTGCCGTCATATCAATGTGATGTAGGATCAATGCAAGATGCATTCTCGTCAATCC
CACCATACAAGATTGATGGTGTTCTATTTTACCACAAAGATGTTAATTACGAGCCTGGAG
CAACTCCTCTTGTTAGCTGGTTGAAACCATACATGTTACCGGAGTGGTTCCCCAATATCA
ATTATCATTCGGATTTCATGAAAGATATTCCTGACGATTATACTGATTATATTAATGAAA
TACAACAATATGAAGCTAAAATGTCTCCGAAACCATTACCTTCCGTCATCTAACAAACAT
AGTAACTATAA

consensusID : consensus_5280#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 458
fasta sequence

                              [TCATAGCAAAATGACTTTTGTTTTCTACGTAGTTGACATCATTTTTATGAGATCTACATGTTATGTCGATCTACCTTTTTATGAACGATCCCAATGGTTAGAACATTATCTCAAGCAACAAATAGAAGAGTATAATGAAGGTGATCCTGTTGCTTTCCATATTCTGCCGTCATATCAATGTGATGTAGGATCAATGCAAGATGCATTCTCGTCAATCCCACCATACAAGATTGATGGTGTTCTATTTTACCACAAAGATGTTAATTACGAGCCTGGAGCAACTCCTCTTGTTAGCTGGTTGAAACCATACATGTTACCGGAGTGGTTCCCCAATATCAATTATCATTCGGATTTCATGAAAGATATTCCTGACGATTATACTGATTATATTAATGAAATACAACAATATGAAGGCTGCAGTGTAAATCGAATTACCTCGGCCAACATGGCGGCCGGCA]

[-] EMBL CD165525             [TCATAGCAAAATGACTTTTGTTTTCTACGTAGTTGACATCATTTTTATGAGATCTACATGTTATGTCGATCTACCTTTTTATGAACGATCCCAATGGTTAGAACATTATCTCAAGCAACAAATAGAAGAGTATAATGAAGGTGATCCTGTTGCTTTCCATATTCTGCCGTCATATCAATGTGATGTAGGATCAATGCAAGATGCATTCTCGTCAATCCCACCATACAAGATTGATGGTGTTCTATTTTACCACAAAGATGTTAATTACGAGCCTGGAGCAACTCCTCTTGTTAGCTGGTTGAAACCATACATGTTACCGGAGTGGTTCCCCAATATCAATTATCATTCGGATTTCATGAAAGATATTCCTGACGATTATACTGATTATATTAATGAAATACAACAATATGAAGGCTGCAGTGTAAATCGAATTACCTCGGCCAACATGGCGGCCGGCA]




>consensus_5280#1
TCATAGCAAAATGACTTTTGTTTTCTACGTAGTTGACATCATTTTTATGAGATCTACATG
TTATGTCGATCTACCTTTTTATGAACGATCCCAATGGTTAGAACATTATCTCAAGCAACA
AATAGAAGAGTATAATGAAGGTGATCCTGTTGCTTTCCATATTCTGCCGTCATATCAATG
TGATGTAGGATCAATGCAAGATGCATTCTCGTCAATCCCACCATACAAGATTGATGGTGT
TCTATTTTACCACAAAGATGTTAATTACGAGCCTGGAGCAACTCCTCTTGTTAGCTGGTT
GAAACCATACATGTTACCGGAGTGGTTCCCCAATATCAATTATCATTCGGATTTCATGAA
AGATATTCCTGACGATTATACTGATTATATTAATGAAATACAACAATATGAAGGCTGCAG
TGTAAATCGAATTACCTCGGCCAACATGGCGGCCGGCA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5280#0      ATTCATATACAACTTTATTAGATTACATATTATACTGTCCAGAAAAGAACATTGATTTCA 60
consensus_5280#1      ------------------------------------------------------------
                                                                                  

consensus_5280#0      GTAATTTCCAAATGGCAAATGGAACAAAGCAAA-TGACTTTTGTTTTCTACGTAGTTGAC 119
consensus_5280#1      -----------------------TCATAGCAAAATGACTTTTGTTTTCTACGTAGTTGAC 37
                                              ** ****** **************************

consensus_5280#0      ATCATTTTTATGAGATCTACATGTTATGTCGATCTACCTTTTTATGAACGATCCCAATGG 179
consensus_5280#1      ATCATTTTTATGAGATCTACATGTTATGTCGATCTACCTTTTTATGAACGATCCCAATGG 97
                      ************************************************************

consensus_5280#0      TTAGAACATTATCTCAAGCAACAAATAGAAGAGTATAATGAAGGTGATCCTGTTGCTTTC 239
consensus_5280#1      TTAGAACATTATCTCAAGCAACAAATAGAAGAGTATAATGAAGGTGATCCTGTTGCTTTC 157
                      ************************************************************

consensus_5280#0      CATATTCTGCCGTCATATCAATGTGATGTAGGATCAATGCAAGATGCATTCTCGTCAATC 299
consensus_5280#1      CATATTCTGCCGTCATATCAATGTGATGTAGGATCAATGCAAGATGCATTCTCGTCAATC 217
                      ************************************************************

consensus_5280#0      CCACCATACAAGATTGATGGTGTTCTATTTTACCACAAAGATGTTAATTACGAGCCTGGA 359
consensus_5280#1      CCACCATACAAGATTGATGGTGTTCTATTTTACCACAAAGATGTTAATTACGAGCCTGGA 277
                      ************************************************************

consensus_5280#0      GCAACTCCTCTTGTTAGCTGGTTGAAACCATACATGTTACCGGAGTGGTTCCCCAATATC 419
consensus_5280#1      GCAACTCCTCTTGTTAGCTGGTTGAAACCATACATGTTACCGGAGTGGTTCCCCAATATC 337
                      ************************************************************

consensus_5280#0      AATTATCATTCGGATTTCATGAAAGATATTCCTGACGATTATACTGATTATATTAATGAA 479
consensus_5280#1      AATTATCATTCGGATTTCATGAAAGATATTCCTGACGATTATACTGATTATATTAATGAA 397
                      ************************************************************

consensus_5280#0      ATACAACAATATGAAG-CTAAAATGTCTCCGAAACCATTACCTTCCGTCATCTAACAAAC 538
consensus_5280#1      ATACAACAATATGAAGGCTGCAGTGT----AAATCGAATTACCTCGGCCA--------AC 445
                      **************** **  * ***     ** * * *  * ** * **        **

consensus_5280#0      ATAGTAACTATAA 551
consensus_5280#1      ATGGCGGCCGGCA 458
                      ** *   *    *